Genome-wide protein sets input to OrthoMCL, OrthoMCL output, Perl script to count cross-species occurence of OrthoMCL groups, and output of Perl script, as used by McGill and Barker (2017, BMC Research Notes, submitted).
McGill, Susan; Barker, Daniel. (2017). Additional files for 'Comparison of the protein-coding genomes of three deep-sea, sulfur-oxidising bacteria: "Candidatus Ruthia magnifica", "Candidatus Vesicomyosocius okutanii" and Thiomicrospira crunogena', [dataset]. http://dx.doi.org/10.7488/ds/2065.