Abstract
The Matlab tool in this entry allows the processing and analysis of array tomography microscopy images.
To use it, follow the included protocol described in the "Array tomography Matlab tool quick protocol.docx" file.
What you will find... - Processing tools; - Alignment of consecutive images (registration); Selection of objects of interest (3D local threshold segmentation). Analysis tools: Density of objects in the 3D space; Colocalization between n channels (by distance between centroids or overlapping area); Distance of the objects from the biggest object (created for distance of objects from amyloid plaques).
To use it, follow the included protocol described in the "Array tomography Matlab tool quick protocol.docx" file.
What you will find... - Processing tools; - Alignment of consecutive images (registration); Selection of objects of interest (3D local threshold segmentation). Analysis tools: Density of objects in the 3D space; Colocalization between n channels (by distance between centroids or overlapping area); Distance of the objects from the biggest object (created for distance of objects from amyloid plaques).
| Date made available | 13 Feb 2025 |
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| Publisher | Edinburgh DataShare |