[CODE] NNPDF/nnpdf: Version 4.0.7

This is the version used for the production of the fits presented and released as part of the NNPDF4.0 QED, MHOU and N3LO papers. What's Changed Enable conda package for 3.11 (#1890) @scarlehoff Add theory 390 for Leading Order (#1891) @scarlehoff Set to 0 not active flavours (#1884) @scarlehoff update fitbot reference (#1883) @RoyStegeman Add --legacy40 flag for evolven3fit_new to use the grid for nf=3 instead of nf=4 (#1879) @scarlehoff Add N3LO as varied theories (#1878) @giacomomagni Add two extra colors (#1876) @scarlehoff Allow photon PDF to reports (#1875) @niclaurenti Set deadline=None for test_kitable_with_cuts (#1873) @scarlehoff Set reportengine version ==0.30.28 (#1872) @scarlehoff Fix typo in validphys (#1870) @niclaurenti Add qcd exa to theory.db as theory 798 (#1857) @niclaurenti Raise a ValueError when the central value is outside of the percentiles (#1868) @scarlehoff calculate only predicitons for rep0 in thcovmat construction (#1863) @RoyStegeman Add a new plot_fancy_dataspecs and chi2 distributions with scale variations (#1830) @scarlehoff [bot] Add conda environment for tag 4.0.7 (#1851) @github-actions run black isort on recently edited files (#1848) @RoyStegeman N3LO fits with IHOU (#1698) @giacomomagni Raise an exception when use_pdferr is used together with plot_fancy (#1844) @scarlehoff some cosmetic fixes of things that bothered me (#1845) @RoyStegeman update pineappl dependency to 0.6.2 (#1842) @RoyStegeman remove qed input from ekobox.apply.apply_pdf (#1841) @RoyStegeman Generic hessian PDF covmat (#1831) @comane update postivity commondata (#1839) @RoyStegeman Remove NNLO specific cuts (#1835) @andreab1997 Restart hyperopt (#1824) @Cmurilochem nFONLL theory indices up to and including 721 (#1810) @andreab1997 Remove unused functions in photon module (#1833) @niclaurenti Update PLOTTING_ATLAS_Z_TOT_13TEV.yaml (#1827) @enocera add scale variations IDs for theory 600 (#1823) @t7phy Exa couplings2 (#1806) @niclaurenti Miscelaneous bugfixes (matplotlib & futuretests) (#1809) @scarlehoff Allow added cuts (#1745) @Zaharid Documentation for reportengine (#1804) @comane Test with less tests (#1805) @scarlehoff Add --lite option to vp-comparefits for quick comparisons (#1801) @scarlehoff Raise an exception if after many tries the replicas are still negative (#1790) @scarlehoff Use evolven3fit_new with the fitbot (#1789) @scarlehoff Fix regression tests for arclengths (#1791) @scarlehoff Add produce_eko_photon to evolven3fit_new (#1778) @niclaurenti Intermediate merge of Aron's stuff (#1775) @goord Refactoring model creation code (#1734) @APJansen Change fiatlux_dis_F{2,L} -> FIATLUX_DIS_F{2,L} (#1774) @niclaurenti Alpha variation but same thcovmat (#1768) @andreab1997 Change also luxset with vp-nextfitruncard (#1767) @niclaurenti Add theory 527 and extend comments in theories 522, 523, 524, 525, 526 (#1766) @niclaurenti Separate DY_CC and DY_NC from DY in nnpdf31_process (#1760) @andreab1997 Avoid using resources at the module level (#1763) @niclaurenti Add luminosity channels (#1762) @Zaharid QED tests (#1738) @niclaurenti Allow categorical variables in smpdf plots (#1715) @Zaharid Enable nf=3 with evolven3fit_new. (#1754) @scarlehoff Getting latest master changes (#1759) @goord Allow different matching scale for the photon (#1751) @niclaurenti Hessian PDF Covariance Matrix for theory predictions (#1743) @comane Tests for evolven3fit_new and lhapdf .info files. (#1746) @scarlehoff Fixes to prepare the code for pandas 2.0 (#1747) @scarlehoff Evolven3fit new w eko 0.13 (#1742) @giacomomagni Re-style codebase: validphys (#1737) @scarlehoff add .git-blame-ignore-revs (#1736) @RoyStegeman Add photon (#1643) @niclaurenti Make pineparser handle optimized fktables (#1716) @andreab1997 Closure test L1 consistency in random noise generation (#1695) @comane nnpdf without pyplot imports (#1723) @comane Fixing logs of evolven3fit_new (#1731) @andreab1997 Change the fitbot solver to libmamba (#1725) @scarlehoff futureproofing: make dropna keyword based (#1713) @RoyStegeman Positivity constraints for c and cbar (#1697) @enocera Remove replica selector functionality (#1703) @Zaharid Update recommended pylintrc (#1701) @Zaharid Added EXA theory (250) (#1689) @enocera k-factors for new theories (#1677) @giacomomagni Fix label of absolute uncertainty plots (#1692) @Zaharid Remove libNNPDF from python (#1680) @scarlehoff vp-comparefit issue, due to arclength errors (#1681) @comane Keep name of target dataset (avoid reutilizing fktables) (#1688) @scarlehoff Move xgrid back to n3fit (#1686) @scarlehoff Update to the plot (#1685) @scarlehoff Python closure sampling (with the only python commondata branch) (#1660) @scarlehoff Substitution of apfel with eko in evolven3fit (#1537) @andreab1997 Use ndata instead of len (#1675) @scarlehoff Tensorflow in macos (#1673) @scarlehoff only build docs for 3.9 (#1671) @scarlehoff Build for Python 3.10 (#1628) @Zaharid Save pseudodata by default (#1669) @RoyStegeman Fix penalties and add tests (#1668) @scarlehoff Use python CommonData (#1650) @scarlehoff New Features Multi dense logistics (#1818) @APJansen Order dataset differences by name of the commondata (#1867) @scarlehoff FTDY maxTau cuts in runcard (#1733) @andreab1997 Add a pyproject.toml (#1710) @scarlehoff Mix bands and replicas (#1607) @scarlehoff read NN output size for hyperscan from runcard (#1696) @RoyStegeman Evolve n3fit with eko 0.12 (#1694) @giacomomagni Bug fixes add explicit cut for FONLL-E (#1874) @giacomomagni bugfix with stopping (#1820) @APJansen correct sorting and indexing of level1 data (#1765) @comane don't print msr layer summary if msr not enforced (#1795) @RoyStegeman Fix custom_group processing (#1753) @Zaharid Fix Q2grid in evolven3fit_new (#1750) @giacomomagni Fix calling of fiatlux (#1749) @niclaurenti multiclosure internal dataset loader should use t0_covmat_from_systematics (#1719) @comane reintroduce AlphaS_* attributes in the PDF class and add a test of alpha_s_bundle_pdf (#1714) @RoyStegeman Documentation remove mention that vp-setupfit doesn't always have to be the first step (#1771) @RoyStegeman Update styling docs (#1740) @RoyStegeman add use_scalevar_uncertainties to loading custom comvat docs (#1712) @RoyStegeman add version 4.0.6 to releases list in docs (#1670) @RoyStegeman Workflow use mamba in docker construction (#1850) @RoyStegeman add skip_magic_trailing_comma to black config (#1828) @RoyStegeman Mamba ci (#1793) @APJansen Refactoring Move replica axis to front everywhere (#1877) @APJansen Multi dense logistics (#1818) @APJansen Refactor stopping (#1792) @APJansen Refactor msr (#1781) @APJansen Refactor rotations (#1780) @APJansen Refactor preprocessing (#1777) @APJansen Refactor xintegrator (#1779) @APJansen Implement FkRotation as subclass of Rotation by rewriting using a rotation tensor (#1772) @APJansen

Zaharid, Juan M. Cruz-Martinez, Stefano Carrazza, Rosalyn Pearson, Cameron Voisey, wilsonmr, Andrea Barontini, Roy Stegeman, Nathan Hartland, Niccolò Laurenti, Aron Jansen, Emanuele R. Nocera, Luca Rottoli, Rabah Abdul Khalek, Emma Slade, Giacomo Magni, Mark Nestor Costantini, siranipour, Carlos Murilo Romero Rocha, … Samuele Voltan. (2023). NNPDF/nnpdf: Version 4.0.7 (4.0.7). Zenodo. https://doi.org/10.5281/zenodo.10362153