common-workflow-language/cwltool: 3.1.20231206180100

What's Changed --no-warnings for even quieter output (errors only) by @mr-c in https://github.com/common-workflow-language/cwltool/pull/1885 pathmapper: don't use temporary lists by @mr-c in https://github.com/common-workflow-language/cwltool/pull/1949 a toil-cwl-runner user with many inputs of large "measurement set" directories had reported many hours to process stage_files and now reports that this PR reduces that to several minutes! run the CWL v1.2.1 conformance tests by @mr-c in https://github.com/common-workflow-language/cwltool/pull/1942 add support for dockerFile with --singularity by @misterbrandonwalker in https://github.com/common-workflow-language/cwltool/pull/1938 fix compute_checksums during cache check for input File with literal default by @mr-c in https://github.com/common-workflow-language/cwltool/pull/1776 make running the conformance test more flexible by @mr-c in https://github.com/common-workflow-language/cwltool/pull/1911 Misc remove last usage of pkg_resources by @mr-c in https://github.com/common-workflow-language/cwltool/pull/1945 Drop "Atomic" types in favor of recursive typedefs by @mr-c in https://github.com/common-workflow-language/cwltool/pull/1943 Deps Bump mypy from 1.6.1 to 1.7.1 by @dependabot in https://github.com/common-workflow-language/cwltool/pull/1940 Bump sphinx-rtd-theme from 1.3.0 to 2.0.0 by @dependabot in https://github.com/common-workflow-language/cwltool/pull/1948 Update flake8-bugbear requirement from

Michael R. Crusoe, Farah Zaib Khan, Peter Amstutz, Stian Soiland-Reyes, Manvendra Singh, Kapil kumar, Pau Ruiz Safont, John Chilton, Thomas Hickman, boysha, Tomoya Tanjo, Rupert Nash, Kevin Hannon, ash, Michael Kotliar, Brad Chapman, Andrey Kartashov, Guillermo Carrasco, Dan Leehr, … James J Porter. (2023). common-workflow-language/cwltool: 3.1.20231206180100 (3.1.20231206180100). Zenodo. https://doi.org/10.5281/zenodo.10278019