Dataset for a Mouse and Rat heart trancriptomic and co-expression network analysis

mouse_heart_data and rat_heart_expression contain GEO expression matrix for mouse and rat experiments. gse_gsm_mouse.txt and gse_gsm_rat.txt contain experiment IDs and series IDs from GEO. heart_quantNormData_mouse.tsv and heart_quantNormData_rat.tsv contain normalised expression matrices. heart_quantNormData_mouse_1sd.tsv and heart_quantNormData_rat_1sd.tsv contain the normalised expression matrices restricted to genes with a standard deviation higher than 1. fileForSCHypeThreshold0.5_heart.txt and fileForSCHypeThreshold0.75_heart.txt are the input for SCHype. schype_output_0.5th_heart.nodes.txt, schype_output_0.5th_heart.edges.txt, schype_output_0.75th_heart.nodes.txt and schype_output_0.75th_heart.edges.txt are the outputs. geneLists.zip contains gene lists used for ontology analysis (ENSEMBL gene id)

Loren Reyes, P. F., Michoel, T., Joshi, A., & Devailly, G. (2017). Dataset for a Mouse and Rat heart trancriptomic and co-expression network analysis [Data set]. Zenodo. https://doi.org/10.5281/zenodo.839015