Dataset for a Mouse and Rat liver trancriptomic analysis

Data used for the anlaysis. R scripts used can be found on github: https://github.com/gdevailly/liver_mouse_rat matrixLiverMouse.txt and rat_full_data_matrix.txt contain GEO expression matrix for mouse and rat rexperiments. GSEmouse.txt and GSErat.txt contain experiment IDs from GEO and experiment titles. GEORat.txt and GEOMouse.txt contain experiment IDs and series IDs from GEO. quantNormData_mouse.tsv and quantNormData_rat.tsv contain normalised expression matrices. fileForSCHypeThreshold0.5.txt is the input for SCHype. schype_output_0.5th.nodes.txt and schype_output_0.5th.edges.txt are the outputs. mouse_rat_ampping.txt is the probe mapping used to compare mouse and rat data. geneLists.zip contains gene lists used for ontology analysis (ENSEMBL gene id)

Pía Francesca Loren Reyes, Tom Michoel, Anagha Joshi, & Guillaume Devailly. (2017). Dataset for a Mouse and Rat liver trancriptomic analysis [Data set]. Zenodo. https://doi.org/10.5281/zenodo.439483