Description
HIV Consensus Sequence Repository<br> of the PANGEA-HIV consortium
[](https://creativecommons.org/licenses/by/4.0/)
This repository provides HIV consensus sequences of the [PANGEA-HIV consortium](https://www.pangea-hiv.org/).
HIV sequence data were obtained from participants from multiple cohorts across Africa and generated following deep-sequencing by the [PANGEA-HIV consortium](https://www.pangea-hiv.org). PANGEA-HIV stands for "Phylogenetics And Networks for Generalised Epidemics in Africa".
The overarching goal of the PANGEA consortium is to identify individual and population level factors that drive the epidemic using HIV-1 phylogenetic data, analyse the dynamics of the epidemic, and translate these findings into information that can be used to design more efficient interventions.
[](https://creativecommons.org/licenses/by/4.0/)
This repository provides HIV consensus sequences of the [PANGEA-HIV consortium](https://www.pangea-hiv.org/).
HIV sequence data were obtained from participants from multiple cohorts across Africa and generated following deep-sequencing by the [PANGEA-HIV consortium](https://www.pangea-hiv.org). PANGEA-HIV stands for "Phylogenetics And Networks for Generalised Epidemics in Africa".
The overarching goal of the PANGEA consortium is to identify individual and population level factors that drive the epidemic using HIV-1 phylogenetic data, analyse the dynamics of the epidemic, and translate these findings into information that can be used to design more efficient interventions.
Data Citation
Xiaoyu Yu, Andrew Rambaut, & Oliver. (2024). PANGEA-HIV/PANGEA-Sequences: Latest Version Release (v1.1.1). Zenodo. https://doi.org/10.5281/zenodo.10793873
| Date made available | 7 Mar 2024 |
|---|---|
| Publisher | Zenodo |
Research output
- 1 Article
-
HIV drug resistance during antiretroviral therapy scale-up in Uganda, 2012–19: a population-based, longitudinal study
Rakai Health Sciences Program and the Pangea HIV Consortium, Martin, M. A., Reynolds, S. J., Foley, B. T., Nalugoda, F., Quinn, T. C., Kemp, S. A., Nakalanzi, M., Kankaka, E. N., Kigozi, G., Ssekubugu, R., Gupta, R. K., Abeler-Dörner, L., Kagaayi, J., Ratmann, O., Fraser, C., Galiwango, R. M., Bonsall, D. & Grabowski, M. K., 22 Dec 2025, In: The Lancet Microbe. 6, 12, 11 p., 101218.Research output: Contribution to journal › Article › peer-review
Open AccessFile
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