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Phylogenetic conservatism in the relationship between functional and demographic characteristics in Amazon tree taxa

  • Pablo Sanchez Martinez (Creator)
  • Kyle Dexter (Creator)
  • Freddie Draper (Creator)
  • Christopher Baraloto (Creator)
  • Amaral Iêda (Creator)
  • Luiz De souza coelho (Creator)
  • Francisca Dionizia de Almeida Matos (Creator)
  • Diógenes De andrade lima filho (Creator)
  • Rafael Salomão (Creator)
  • Florian Wittmann (Creator)
  • Carolina V. Castilho (Creator)
  • Marcelo de jesus veiga Carim (Creator)
  • Juan Ernesto Guevara Andino (Creator)
  • Oliver Phillips (Creator)
  • Bill Magnusson (Creator)
  • Daniel Sabatier (Creator)
  • Juan david Cardenas revilla (Creator)
  • Jean-François Molino (Creator)
  • Mariana victória Irume (Creator)
  • Maria Pires martins (Creator)
  • José renan Da silva guimarães (Creator)
  • José Tomás Ramos (Creator)
  • Olaf Banki (Creator)
  • Maria Teresa Fernandez Piedade (Creator)
  • Dairon Cárdenas (Creator)
  • Nigel C. A. Pitman (Creator)
  • Layon Oreste Demarchi (Creator)
  • Jochen Schöngart (Creator)
  • Bruno garcia Luize (Creator)
  • Evlyn márcia Moraes de leão novo (Creator)
  • Percy Núñez Vargas (Creator)
  • Thiago Silva (Creator)
  • Eduardo martins Venticinque (Creator)
  • Angelo Gilberto Manzatto (Creator)
  • Neidiane farias costa Reis (Creator)
  • John Terborgh (Creator)
  • Katia regina Casula (Creator)
  • Eurídice Honorio Coronado (Creator)
  • Abel Monteagudo Mendoza (Creator)
  • Juan Carlos Montero (Creator)
  • Flavia Costa (Creator)
  • Ted R. Feldpausch (Creator)
  • Adriano costa Quaresma (Creator)
  • Nicolas Castaño (Creator)
  • Charles Eugene Zartman (Creator)
  • Timothy J. Killeen (Creator)
  • Beatriz Schwantes Marimon (Creator)
  • Ben Hur Marimon Junior (Creator)
  • Rodolfo Vasquez (Creator)
  • Bonifacio Mostacedo (Creator)
  • Rafael Leandro De Assis (Creator)
  • Dário dantas Do amaral (Creator)
  • Julien Engel (Creator)
  • Hernan Castellanos (Creator)
  • Marcelo Madeiros (Creator)
  • Marcelo F Simon (Creator)
  • Ana Andrade (Creator)
  • Jose Luis Camargo (Creator)
  • Bill Laurance (Creator)
  • Susan Laurance (Creator)
  • Lorena maniguaje Rincón (Creator)
  • Juliana Schietti (Creator)
  • Thaiane Rodrigues De Sousa (Creator)
  • Emanuelle De sousa farias (Creator)
  • Maria aparecida Lopes (Creator)
  • José leonardo Lima magalhães (Creator)
  • Henrique eduardo Mendonça nascimento (Creator)
  • Helder Lima de queiroz (Creator)
  • Gerardo Aymard (Creator)
  • Roel Brienen (Creator)
  • Pablo Roberto Stevenson Diaz (Creator)
  • Alejandro Araujo-Murakami (Creator)
  • Bruno barçante ladvocat Cintra (Creator)
  • Tim Baker (Creator)
  • Yuri oliveira Feitosa (Creator)
  • Hugo Mogollón (Creator)
  • Carlos A. Peres (Creator)
  • Miles R. Silman (Creator)
  • Leandro Ferreira (Creator)
  • José rafael Lozada (Creator)
  • Jim Comiskey (Creator)
  • José julio De toledo (Creator)
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  • Nállarett Dávila (Creator)
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  • Aline P. Lopes (Creator)
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  • Francisco Dallmeier (Creator)
  • Vitor Freitas (Creator)
  • Eliana M. Jimenez (Creator)
  • David Neill (Creator)
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  • Janaína Costa noronha (Creator)
  • Daniel p. p. De aguiar (Creator)
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  • Marcelo Petratti pansonato (Creator)
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  • Marcos Rios Paredes (Creator)
  • Domingos De jesus rodrigues (Creator)
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  • Izaias brasil Da silva (Creator)
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  • Marcelino Carneiro guedes (Creator)
  • Carolina Levis (Creator)
  • Juan Carlos Licona (Creator)
  • Boris Villa-Terrazas (Creator)
  • Vincent Vos (Creator)
  • Carlos Ceron (Creator)
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  • Terry W. Henkel (Creator)
  • J. Ethan Householder (Creator)
  • Isau Huamantupa-Chuquimaco (Creator)
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  • Bianca Weiss albuquerque (Creator)
  • Wegliane Campelo (Creator)
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  • Bente Klitgaard (Creator)
  • José luis Marcelo pena (Creator)
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  • Corine Vriesendorp (Creator)
  • Jerome Chave (Creator)
  • Anthony Di Fiore (Creator)
  • Renato richard Hilário (Creator)
  • Luciana De Oliveira Pereira (Creator)
  • Juan fernando Phillips (Creator)
  • Gonzalo Rivas (Creator)
  • Tinde R. van Andel (Creator)
  • Patricio von Hildebrand (Creator)
  • William Balee (Creator)
  • Edelcilio Marques barbosa (Creator)
  • Luiz carlos De matos bonates (Creator)
  • Hilda paulette Dávila doza (Creator)
  • Bruce Hoffman (Creator)
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  • Michelle Kalamandeen (Creator)
  • Guilherme Lobo (Creator)
  • Luis A. Torres Montenegro (Creator)
  • Marcelo Trindade nascimento (Creator)
  • Alexandre Adalardo de Oliveira (Creator)
  • Maihyra marina Pombo (Creator)
  • Hirma Ramirez-Angulo (Creator)
  • Maira Rocha (Creator)
  • Veridiana Vizoni scudeller (Creator)
  • María Natalia Umaña (Creator)
  • Geertje van der Heijden (Creator)
  • Emilio Vilanova Torre (Creator)
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  • Germaine alexander Parada (Creator)
  • Armando Torres-Lezama (Creator)
  • Ligia Estela Urrego Giraldo (Creator)
  • Daniel Villarroel (Creator)
  • Roderick Zagt (Creator)
  • Miguel N. Alexiades (Creator)
  • Edmar Almeida De Oliveira (Creator)
  • Reily Fortier (Creator)
  • Karina C. Garcia (Creator)
  • Lionel Hernandez (Creator)
  • Walter A. Palacios (Creator)
  • Susamar Pansini (Creator)
  • Daniela Pauletto (Creator)
  • Freddy Ramirez arevalo (Creator)
  • Adeilza Felipe sampaio (Creator)
  • Elvis Valderrama Sandoval (Creator)
  • Luis Valenzuela Gamarra (Creator)
  • Masha T. Sande (Creator)
  • Lourens Poorter (Creator)
  • Hans ter Steege (Creator)

Dataset

Description

Leaf and wood functional traits of trees are related to growth, reproduction, and survival, but the degree of phylogenetic conservatism in these relationships is largely unknown. In this study, we describe the variability of strategies involving leaf, wood and demographic characteristics for tree genera distributed across the Amazon Region, and quantify phylogenetic signal for the characteristics and their relationships. Leaf and wood traits are aligned with demographic variables along two main axes of variation. The first axis represents the coordination of leaf traits describing resource uptake and use, wood density, seed mass and survival. The second axis represents the coordination between size and growth. Both axes show strong phylogenetic signal, suggesting a constrained evolution influenced by ancestral values, yet the second axis also has an additional, substantial portion of its variation that is driven by functional correlations unrelated to phylogeny, suggesting simultaneously higher evolutionary lability and coordination. Synthesis. Our results suggest that life-history strategies of tropical trees are generally phylogenetically conserved, but that tree lineages may have some capability of responding to environmental changes by modulating their growth and size. Overall, we provide the largest-scale synopsis of functional characteristics of Amazonian trees, showing substantial nuance in the evolutionary patterns of individual characteristics and their relationships.

This repository contains the data and R scripts used in the paper titled: "Phylogenetic conservatism in the relationship between functional and demographic characteristics in Amazon tree taxa", published by Pablo Sanchez-Martinez et al. in the journal Functional Ecology in 2024.

The repository contains:

Dataset. Genus level data of Amazonian tree genus functional traits and demographic characteristics. Cells with no available data are coded as "NA".
Phylogeny. Phylogeny used in the analyses, obtained and pruned from (Neves et al. 2020).
R project. Includes the scripts used to analyze the data and the general fonder structure needed to save results and outputs. Analyses are mainly implemented by the TrEvol R package (Sanchez-Martinez et al. 2024).
For any extra information on the method or data please refer to the manuscript materials and methods or contact first author ([email protected]).

Data Citation

Sanchez-Martinez, Pablo; Dexter, Kyle; Draper, Freddie et al. (2024). Phylogenetic conservatism in the relationship between functional and demographic characteristics in Amazon tree taxa [Dataset]. Dryad. https://doi.org/10.5061/dryad.0gb5mkmb1
Date made available17 Oct 2024
PublisherDryad
  • Phylogenetic conservatism in the relationship between functional and demographic characteristics in Amazon tree taxa

    Sanchez‐martinez, P., Dexter, K. G., Draper, F. C., Baraloto, C., Leão do amaral, I., De souza coelho, L., De almeida matos, F. D., De andrade lima filho, D., Salomão, R. P., Wittmann, F., Castilho, C. V., De jesus veiga carim, M., Guevara, J. E., Phillips, O. L., Magnusson, W. E., Sabatier, D., Cardenas revilla, J. D., Molino, J., Irume, M. V. & Pires martins, M. & 195 others, Da silva guimarães, J. R., Ferreira ramos, J., Bánki, O. S., Fernandez piedade, M. T., Cárdenas lópez, D., Pitman, N. C. A., Demarchi, L. O., Schöngart, J., Garcia luize, B., Moraes de leão novo, E. M., Núñez vargas, P., Freire silva, T. S., Martins venticinque, E., Manzatto, A. G., Costa reis, N. F., Terborgh, J., Casula, K. R., Honorio coronado, E. N., Monteagudo mendoza, A., Montero, J. C., Costa, F. R. C., Feldpausch, T. R., Costa quaresma, A., Castaño arboleda, N., Zartman, C. E., Killeen, T. J., Marimon, B. S., Marimon‐junior, B. H., Vasquez, R., Mostacedo, B., Assis, R. L., Dantas do amaral, D., Engel, J., Castellanos, H., Brilhante de medeiros, M., Fragomeni simon, M., Andrade, A., Camargo, J. L., Laurance, W. F., Laurance, S. G. W., Maniguaje rincón, L., Schietti, J., Sousa, T. R., De sousa farias, E., Lopes, M. A., Lima magalhães, J. L., Mendonça nascimento, H. E., Lima de queiroz, H., Aymard, G., Brienen, R., Stevenson, P. R., Araujo‐murakami, A., Barçante ladvocat cintra, B., Baker, T. R., Oliveira feitosa, Y., Mogollón, H. F., Peres, C. A., Silman, M. R., Ferreira, L. V., Lozada, J. R., Comiskey, J. A., De toledo, J. J., Damasco, G., Dávila, N., García‐villacorta, R., Lopes, A., Vicentini, A., Cornejo valverde, F., Alonso, A., Arroyo, L., Dallmeier, F., Gomes, V. H. F., Neill, D., Peñuela mora, M. C., Costa noronha, J., De aguiar, D. P. P., Rodrigues barbosa, F., Bredin, Y. K., De sá carpanedo, R., Antunes carvalho, F., Coelho de souza, F., Feeley, K. J., Gribel, R., Haugaasen, T., Hawes, J. E., Petratti pansonato, M., Pipoly, J. J., Ríos paredes, M., De jesus rodrigues, D., Barlow, J., Berenguer, E., Brasil da silva, I., Ferreira, M. J., Ferreira, J., Fine, P. V. A., Carneiro guedes, M., Levis, C., Licona, J. C., Villa zegarra, B. E., Vos, V. A., Cerón, C., Machado durgante, F., Fonty, É., Henkel, T. W., Householder, J. E., Huamantupa‐chuquimaco, I., Silveira, M., Stropp, J., Thomas, R., Daly, D., Milliken, W., Pardo molina, G., Pennington, T., Guimarães vieira, I. C., Weiss albuquerque, B., Campelo, W., Fuentes, A., Klitgaard, B., Marcelo pena, J. L., Tello, J. S., Vriesendorp, C., Chave, J., Di fiore, A., Hilário, R. R., De oliveira pereira, L., Phillips, J. F., Rivas‐torres, G., Van andel, T. R., Von hildebrand, P., Balee, W., Marques barbosa, E., De matos bonates, L. C., Dávila doza, H. P., Zárate gómez, R., Gonzales, T., Gallardo gonzales, G. P., Hoffman, B., Braga junqueira, A., Malhi, Y., De andrade miranda, I. P., Mozombite pinto, L. F., Prieto, A., Rudas, A., Ruschel, A. R., Silva, N., Vela, C. I. A., Zent, S., Zent, E. L., Cano, A., Carrero márquez, Y. A., Correa, D. F., Pedrosa costa, J. B., Monteiro flores, B., Galbraith, D., Holmgren, M., Kalamandeen, M., Lobo, G., Montenegro, L. T., Trindade nascimento, M., Oliveira, A. A., Pombo, M. M., Ramirez‐angulo, H., Rocha, M., Vizoni scudeller, V., Umaña, M. N., Van der heijden, G., Vilanova torre, E., Baider, C., Balslev, H., Cárdenas, S., Casas, L. F., Farfan‐rios, W., Ferreira, C., Linares‐palomino, R., Mendoza, C., Mesones, I., Parada, G. A., Torres‐lezama, A., Villarroel, D., Zagt, R., Alexiades, M. N., Almeida de oliveira, E., Fortier, R. P., Garcia‐cabrera, K., Hernandez, L., Cuenca, W. P., Pansini, S., Pauletto, D., Ramirez arevalo, F., Felipe sampaio, A., Valderrama sandoval, E. H., Valenzuela gamarra, L., Van der sande, M., Poorter, L. & Ter steege, H., 1 Jan 2025, In: Functional Ecology. 39, 1, p. 181-198

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