Sample descriptors linked to metagenomic sequencing data from human and animal enteric samples from Vietnam

This dataset consists of two files, one of which is a data dictionary, the second is a spreadsheet containing details of the sources of the DNA sequence data (multiple species).

## Access ##

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Data supporting a publication describing data obtained from a large field collection of enteric samples taken from humans, pigs, rodents and other mammal hosts in Vietnam between 2012 and 2016. Each of 2100 stool or rectal swab samples was subjected to virally-enriched agnostic metagenomic sequencing; the short read sequence data are accessible from the European Nucleotide Archive (ENA). We link the sequence data to metadata on host type and demography and geographic location, distinguishing hospital patients, members of a cohort identified as a high risk of zoonotic infections (e.g. abattoir workers, rat traders) and animals.

VIZIONS, Ashworth A, Bogaardt C, Woolhouse M "Sample descriptors linked to metagenomic sequencing data from human and animal enteric samples from Vietnam" Edinburgh DataVault. DOI: 10.7488/b130ef3f-d3f2-4c8a-956e-e69f974b08ad