Skip to main navigation Skip to search Skip to main content

scPerturb Single-Cell Perturbation Data: RNA and protein h5ad files

  • Stefan Peidli (Creator)
  • Tessa D. Green (Creator)
  • Ciyue Shen (Creator)
  • Torsten Gross (Creator)
  • Joseph Min (Creator)
  • Samuele Garda (Creator)
  • Bo Yuan (Creator)
  • Linus Schumacher (Creator)
  • Jake P. Taylor-King (Creator)
  • Debora S. Marks (Creator)
  • Augustin Luna (Creator)
  • Nils Bluthgen (Creator)
  • Chris Sander (Creator)

Dataset

Description

Collection of h5ad files for RNA and protein single-cell perturbation datasets on scPerturb.org. For the associated publication, see https://www.nature.com/articles/s41592-023-02144-y. H5ad files were created using scanpy 1.9.1, using gzip compression.

Data Citation

Peidli, S., Green, T. D., Shen, C., Gross, T., Min, J., Garda, S., Yuan, B., Schumacher, L., Taylor-King, J. P., Marks, D. S., Luna, A., Blüthgen, N., & Sander, C. (2022). scPerturb Single-Cell Perturbation Data: RNA and protein h5ad files (1.4) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.13350497
Date made available22 Aug 2022
PublisherZenodo

Cite this