TIMED-Design: Efficient Protein Sequence Design with Deep Learning

All models except timed use the following aposteriori setting: poetry run make-frame-dataset /scratch/datasets/biounit/ -d benchmarking_set.csv -e .pdb1.gz --voxels-per-side 21 --frame-edge-length 21 -g True -p 35 -n benchmark_set -v -r -z -cb True -ae CNOCBCA --compression_gzip True -o /scratch/timed_dataset/

Leonardo V Castorina, Kartic Subr, & Christopher W. Wood. (2022). TIMED-Design: Efficient Protein Sequence Design with Deep Learning (v0.1-alpha). Zenodo. https://doi.org/10.5281/zenodo.6997494