Centre for Inflammation Research

Search results

• Synthetic cell-based patterning systems and their applications in stem cell differentiation

  Glykofrydis, F. (Owner), Popravko, A. (Creator), Dzierzak, E. (Owner), Davies, J. (Owner), Romanowski, A. (Data Manager) & Zielinski, T. (Data Manager), Edinburgh DataVault, 30 Jan 2021

  DOI: 10.7488/387d2274-5678-4626-a138-732ba80a767c

  Dataset

• CITE-Seq Mouse Lung Macrophages

  Lucas, C. (Creator) & Gachanja, N. (Creator), Edinburgh DataVault, 2021

  DOI: 10.7488/e45894fd-10b1-4261-89d1-f6735673f964

  Dataset

• School staff’s, healthcare professionals’ and policymakers’ views of asthma and school-based asthma programme for primary school children: A qualitative study in Malaysia

  Ramdzan, K. (Creator), Khoo, E. M. (Creator), Liew, S. M. (Creator), Cunningham, S. (Creator), Pinnock, H. (Creator) & Choudhury, M. (Data Manager), Edinburgh DataVault, 31 May 2021

  DOI: 10.7488/191f40bd-ace9-4c8a-a36c-43b796303166

  Dataset

• IgM antibodies exhibit preferential binding to apoptotic and non-apoptotic nucleated cells

  Hesketh, E. E. (Creator), Edinburgh DataShare, 5 Mar 2015

  DOI: 10.7488/ds/220

  Dataset

• Scottish Family Mental Health (SFMH) Study Dataset

  Cooper, A. (Creator), Blackwood, D. (Creator), Lawrie, S. (Creator), McIntosh, A. (Creator), Romaniuk, L. (Creator), Semple, S. (Creator), Duff, B. (Creator) & Whalley, H. (Creator), Edinburgh DataVault, 10 Oct 2023

  DOI: 10.7488/7f08e5f1-b300-4a32-bd18-ef511f82c390

  Dataset

• Patient derived cancer-associated fibroblasts from non-small cell lung cancer undergo phenotypic drift in culture

  Akram, A. (Creator), Dorward, D. (Creator), Koppensteiner, L. (Creator), O'Connor, R. (Creator), Jones, P. (Creator) & Mathieson, L. (Creator), Edinburgh DataShare, 14 Jan 2025

  DOI: 10.7488/ds/7767

  Dataset

• Stereo_seq_mouse: Sequencing files from mouse liver Stereo-Seq spatial transcriptomics project

  Ramachandran, P. (Creator), Edinburgh DataVault, 22 May 2023

  DOI: 10.7488/dcb95973-cc99-46a6-a4e3-0c10802cd576

  Dataset

• Data associated with manuscript: Electrochemical sensing of human neutrophil elastase and polymorphonuclear neutrophil activity

  González-Fernández, E. (Creator), Scholefield, E. (Creator), Murray, A. (Creator), Mount, A. (Creator) & Bradley, M. (Creator), Edinburgh DataShare, 10 Aug 2018

  DOI: 10.7488/ds/2409

  Dataset

• SnRNAseq_human_Parse: Sequencing files from human liver Single-nucleus RNA-seq project using Parse Biosciences platform

  Ramachandran, P. (Creator), Edinburgh DataVault, 22 May 2023

  DOI: 10.7488/a097eb13-f6be-4eff-8570-c766813d67ef

  Dataset

• Stereo_seq_human: Sequencing files from human liver Stereo-Seq spatial transcriptomics project

  Ramachandran, P. (Creator), Edinburgh DataVault, 22 May 2023

  DOI: 10.7488/aed3d370-0bb8-4442-9938-718406eac723

  Dataset

• Exploratory use of fluorescent SmartProbes for the rapid detection of microbial isolates causing corneal ulcer

  Mills, B. (Creator), Edinburgh DataShare, 6 May 2020

  DOI: 10.7488/ds/2812

  Dataset

• Supplementary material for paper "Time-resolved spectroscopy of fluorescence quenching in optical fibre-based pH sensors"

  Ehrlich, K. (Creator), Edinburgh DataShare, 19 Oct 2020

  DOI: 10.7488/ds/2934, https://doi.org/10.3390/s20216115

  Dataset

• Optimising Spectronaut search parameters to improve data quality with minimal proteome coverage reductions in DIA analyses of heterogeneous samples

  Brenes, A. (Creator) & Arthur, S. (Creator), PRIDE database hosted by European Bioinformatics Institute, EBI, 11 Oct 2023

  https://www.ebi.ac.uk/pride/archive/projects/PXD045958

  Dataset

• ISARIC4C OAS data

  Baillie, K. (Creator), Edinburgh DataShare, 20 Sept 2021

  DOI: 10.7488/ds/3139, https://doi.org/10.1101/2021.05.05.21256681

  Dataset

• Autofluorescence lifetime endomicroscopic images on ex-vivo lung cancer

  Wang, Q. (Creator), Finlayson, N. (Creator), Akram, A. (Creator), Fernandes, S. (Creator), Williams, G. (Creator) & Williams, E. (Creator), Edinburgh DataShare, 5 Jan 2022

  DOI: 10.7488/ds/3269

  Dataset

• Circuits! - Demonstrating the use of optical fibres in biomedical sciences

  McNicholl, D. (Creator), Reid, P. (Creator), Reynolds, M. (Creator), Bussiere, V. (Creator), Deighan, A. (Creator), Kufcsak, A. (Creator), Norberg, D. (Creator), Spennati, G. (Creator), Szoor-McElhinney, H. (Creator), Jimenez, M. (Creator), Crawford, G. (Creator), Garrett, A. (Creator), Ehrlich, K. (Creator) & Parker, H. (Creator), Edinburgh DataShare, 17 Jul 2019

  DOI: 10.7488/ds/2587

  Dataset

• Role of accelerated ageing in limb muscle wasting of patients with Chronic Obstructive Pulmonary Disease (COPD)

  Lakhdar, R. (Creator), McGuinness, D. (Creator), Drost, E. (Creator), Shiels, P. G. (Creator), Bastos, R. (Creator), Macnee, W. (Creator) & Rabinovich, R. (Creator), Edinburgh DataShare, 16 May 2018

  DOI: 10.7488/ds/2352

  Dataset

• Code and Data accompanying "Ballistic and snake photon imaging for locating optical endomicroscopy fibres"

  Tanner, M. G. (Creator), Edinburgh DataShare, 8 Aug 2017

  DOI: 10.7488/ds/2108, http://datashare.is.ed.ac.uk/handle/10283/758

  Dataset

• ScRNAseq_human_10X: Data from single-cell RNA-seq to investigate the Fibrotic Niche of Chronic Liver Disease

  Ramachandran, P. (Creator), Edinburgh DataVault, 22 May 2023

  DOI: 10.7488/92dc0931-b457-455a-9d14-32db4762bd83

  Dataset

• ScATACseq_mouse_10X: Single-cell ATAC-seq project using 10X Genomics platform to investigate Chronic Liver Disease

  Ramachandran, P. (Creator), Edinburgh DataVault, 22 May 2023

  DOI: 10.7488/d9d173ef-ade9-4423-9219-da5a7fbc88b1

  Dataset

• Molecular Detection of Gram-positive Bacteria in the Human Lung through an Optical Fiber Based Endoscope

  Ucuncu, M. (Creator) & Mills, B. (Creator), Edinburgh DataShare, 1 Aug 2020

  DOI: 10.7488/ds/2813

  Dataset

• Dataset for paper 'Highly Selective and Rapidly Activatable Fluorogenic Thrombin Sensors and Application in Human Lung Tissue'

  Megia-Fernandez, A. (Creator) & Mills, B. (Creator), Edinburgh DataShare, 3 May 2017

  DOI: 10.7488/ds/2006

  Dataset

• Imaging Drug Uptake by Bioorthogonal Stimulated Raman Scattering Microscopy

  Tipping, W. (Creator), Lee, M. (Creator), Serrels, A. (Creator), Brunton, V. (Creator) & Hulme, A. (Creator), Edinburgh DataShare, 18 May 2017

  DOI: 10.7488/ds/2046

  Dataset

• Frugal filtering optical lenses for point-of-care diagnostics

  Mills, B. (Creator), Edinburgh DataShare, 19 Feb 2020

  DOI: 10.7488/ds/2773

  Dataset

• Defining the T cell proteome and the role of mTORC1 during differentiation using quantitative proteomics

  Brenes, A. (Contact Person) & Cantrell, D. (Contact Person), PRIDE database hosted by European Bioinformatics Institute, EBI, 28 Mar 2019

  https://www.ebi.ac.uk/pride/archive/projects/PXD012058

  Dataset

• ScRNAseq_mouse_10X: Sequencing files from mouse fibrotic tissue and blood to investigate the Fibrotic Niche of Chronic Liver Disease

  Ramachandran, P. (Creator), Edinburgh DataVault, 22 May 2023

  DOI: 10.7488/86760ba2-de64-483a-afe6-e8dba35ae784

  Dataset

• Dataset for "Time-resolved spectral-domain optical coherence tomography with CMOS SPAD sensors"

  Kufcsak, A. (Creator) & Krstajić, N. (Creator), Edinburgh DataShare, 20 Apr 2021

  DOI: 10.7488/ds/3020

  Dataset

• Data for publication "Deep Learning-Assisted Co-registration of Full-Spectral Autofluorescence Lifetime Microscopic Images with H&E-Stained Histology Images"

  Fernandes, S. (Creator), Williams, G. (Creator), Akram, A. (Creator), Finalyson, N. (Creator) & Wang, Q. (Creator), Edinburgh DataShare, 18 Mar 2022

  DOI: 10.7488/ds/3421, https://arxiv.org/abs/2202.07755

  Dataset

• Temporal changes to intestinal microbiome induced by stroke

  Mouat, I. (Creator) & McCulloch, L. (Creator), Edinburgh DataShare, 13 Jan 2026

  DOI: 10.7488/ds/7922

  Dataset

• Mass Spectrometry identifies temporal changes and hallmarks of Delayed Recovery in the COVID19 Neutrophil proteomes part2

  Brenes, A. (Creator) & Cantrell, D. (Creator), PRIDE database hosted by European Bioinformatics Institute, EBI, 17 Aug 2022

  https://www.ebi.ac.uk/pride/archive/projects/PXD036089

  Dataset

• Data and code for Core crosstalk in ordered imaging fibre bundles

  Perperidis, A. (Creator), Stone, J. (Creator), Tanner, M. (Creator), Dhaliwal, K. (Creator) & Parker, H. (Creator), Edinburgh DataShare, 22 Oct 2020

  DOI: 10.7488/ds/2938, https://doi.org/10.1364/OL.405764

  Dataset

• First-in-human controlled inhalation of thin graphene oxide nanosheets to study acute cardiorespiratory responses

  Okwelogu, E. (Creator), Raftis, J. (Creator), Bruce, L. (Creator), Poland, C. (Creator), Duffin, R. (Creator), Fokkens, P. H. B. (Creator), Boere, A. J. F. (Creator), Leseman, D. L. A. C. (Creator), Megson, I. L. (Creator), Whitfield, P. D. (Creator), Ziegler, K. (Creator), Tammireddy, S. (Creator), Hadjidemetriou, M. (Creator), Bussy, C. (Creator), Cassee, F. R. (Creator), Newby, D. (Creator), Kostarelos, K. (Creator), Miller, M. (Creator), Joshi, S. (Creator), Andrews, J. (Creator), Tzolos, E. (Creator), Syed, M. B. (Creator), Cuthbert, H. (Creator), Crica, L. E. (Creator) & Lozano, N. (Creator), Edinburgh DataShare, 16 Feb 2024

  DOI: 10.7488/ds/7545

  Dataset

• Data and code for: High fidelity fibre-based physiological sensing deep in tissue

  Tanner, M. G. (Creator) & Bradley, M. (Project Leader), Edinburgh DataShare, 13 May 2019

  DOI: 10.7488/ds/2546

  Dataset

• GenOMICC WGS summary statistics

  Pairo-Castineira, E. (Creator), Kousathanas, A. (Creator), England, G. (Creator) & Baillie, K. (Creator), Edinburgh DataShare, 16 Feb 2022

  DOI: 10.7488/ds/3411, https://www.medrxiv.org/content/10.1101/2021.09.02.21262965v2

  Dataset

• Cold dispase digestion of murine lungs improves recovery and culture of airway epithelial cells

  Schware, J. (Creator), Perona-Wright, G. (Creator), Janas, P. (Creator), Chauche, C. (Creator), Shearer, P. (Creator) & McSorley, H. (Creator), Edinburgh DataShare, 23 Aug 2023

  DOI: 10.7488/ds/7506

  Dataset

• Location of CD39+ T cell sub-populations within tumours predict differential outcomes in non-small cell lung cancer

  Pattle, S. (Creator), O'Connor, R. (Creator), Dorward, D. (Creator), Akram, A. (Creator), Koppensteiner, L. (Creator) & Mathieson, L. (Creator), Edinburgh DataShare, 18 May 2023

  DOI: 10.7488/ds/7447

  Dataset

• Mass Spectrometry identifies temporal changes and hallmarks of Delayed Recovery in the COVID19 Neutrophil proteomes

  Brenes, A. (Creator) & Cantrell, D. A. (Creator), PRIDE database hosted by European Bioinformatics Institute, EBI, 17 Aug 2022

  https://www.ebi.ac.uk/pride/archive/projects/PXD036082

  Dataset

• Landscape of Mast cell populations across organs in mice and humans

  Gaudenzio, N. (Creator), Tauber, M. (Creator), Basso, L. (Creator), Martin, J. (Creator), Bostan, L. (Creator), Magalhaes Pinto, M. (Creator), Guilhen, T. (Creator), Houmadi, R. (Creator), Serhan, N. (Creator), Loste, A. (Creator), Bleriot, C. (Creator), Kamphuis, J. (Creator), Grujic, M. (Creator), Kjellen, L. (Creator), Pejler, G. (Creator), Paul, C. (Creator), Dong, X. (Creator), Galli, S. (Creator), Reber, L. (Creator), Ginhoux, F. (Creator), Bajenoff, M. (Creator) & Gentek, R. (Creator), Dryad, 22 Jun 2023

  DOI: 10.5061/dryad.np5hqbzzz, https://zenodo.org/records/8071138

  Dataset

• TMT characterisation: iPSC vs hESC

  Brenes, A. (Creator) & Lamond, A. (Creator), PRIDE database hosted by European Bioinformatics Institute, EBI, 3 Nov 2021

  https://www.ebi.ac.uk/pride/archive/projects/PXD014502

  Dataset

• HipSci: the iPSC proteomic compendium

  Brenes, A. (Contact Person) & Lamond, A. (Contact Person), PRIDE database hosted by European Bioinformatics Institute, EBI, 25 Jul 2019

  https://www.ebi.ac.uk/pride/archive/projects/PXD010557

  Dataset

• Datasets for Low-Cost High Sensitivity Pulsed Endomicroscopy to Visualize Tri-Color Optical Signatures

  Mills, B. (Creator), Murray, I. (Creator), Marshall, A. (Creator), Craven, T. (Creator), Emanuel, P. (Creator), Choudhary, T. (Creator), Norberg, D. (Creator), Scholefield, E. (Creator), Akram, A. (Creator), Davie, A. (Creator), Hirani, N. (Creator), Bruce, A. (Creator), Moore, A. (Creator), Bradley, M. (Creator), Dhaliwal, K. (Creator) & Krstajic, N. (Creator), Edinburgh DataShare, 1 Jul 2018

  DOI: 10.7488/ds/2355

  Dataset

• Development of a UPLC-MS/MS method for the simultaneous analysis of AT7519 and acetaminophen in a mouse model of acute inflammation

  Rossi, A. (Creator), Simpson, J. (Creator), Cartwright, J. (Creator) & Homer, N. (Creator), Edinburgh DataShare, 19 May 2023

  DOI: 10.7488/ds/7453

  Dataset

• Analysis of AT7519 and acetaminophen in a mouse model of acute inflammation by LC-MS/MS

  Homer, N. (Creator), Cartwright, J. (Creator), Rossi, A. (Creator) & Simpson, J. (Creator), Edinburgh DataShare, 27 Feb 2024

  DOI: 10.7488/ds/7686

  Dataset

• Dataset for `Neutrophils have a temporal dichotomous role in acute liver injury and repair` - FPR1-/-

  Robb, C. T. (Creator), Addison, M. (Creator), Lucas, C. D. (Creator), Forbes, S. J. (Creator), Dorward, D. A. (Creator), Ashmore-Harris, C. (Creator), Candela, M. E. (Creator), Kilpatrick, A. M. (Creator), Vermeren, M. (Creator), Cartwright, J. (Creator), Rossi, A. G. (Creator), Potey, P. M. D. (Creator), Livingstone, E. (Creator), Campana, L. (Creator), Starkey Lewis, P. J. (Creator), Oremek, M. E. M. (Creator), Gachanja, N. (Creator), Rinaldi, G. (Creator), Aird, R. E. (Creator), Yung Man, T. (Creator), Fernando, A. J. (Creator), Simpson, J. P. (Creator), Homer, N. Z. M. (Creator) & Barth, N. (Creator), Edinburgh DataShare, 1 Jun 2025

  DOI: 10.7488/ds/7836

  Dataset

• DataVault: Baillie Lab Longterm Storage Vault A

  Parkinson, N. (Creator), Clohisey Hendry, S. (Creator), Baillie, K. (Creator) & Neyton, L. P. A. (Creator), Edinburgh DataVault, 29 Aug 2022

  Dataset

• Datasets for Journal of Biomedical Optics paper - "Two-color widefield fluorescence microendoscopy enables multiplexed molecular imaging in the alveolar space of human lung tissue"

  Krstajic, N. (Creator), Akram, A.-U.-H. (Creator), Choudhary, T. (Creator), McDonald, N. (Creator), Pedretti, E. (Creator), Scholefield, E. (Creator) & Dhaliwal, K. (Creator), Edinburgh DataShare, 2016

  DOI: 10.7488/ds/1372

  Dataset

• DataVault: Baillie Lab baillie_fantom5 'Vault B'

  Clohisey Hendry, S. (Creator), Baillie, K. (Creator) & Pairo-Castineira, E. (Creator), Edinburgh DataVault, 31 Aug 2022

  Dataset

• Data and Code for "Fibre-based Spectral Ratio Endomicroscopy for Contrast Enhancement of Bacterial Imaging and Pulmonary Autofluorescence"

  Choudhary, T. (Creator), Dhaliwal, K. (Creator), Stone, J. M. (Creator), Tanner, M. (Creator), Parker, H. E. (Creator), Thomson, R. (Creator) & Marshall, A. D. L. (Creator), Edinburgh DataShare, 8 Mar 2019

  DOI: 10.7488/ds/2507, https://doi.org/10.1364/BOE.10.001856

  Dataset

• Tissue adaptation is the dominant driver of the proteomic landscape of intestinal intraepithelial lymphocytes

  Brenes, A. (Creator) & Lamond, A. (Creator), PRIDE database hosted by European Bioinformatics Institute, EBI, 15 Mar 2021

  https://www.ebi.ac.uk/pride/archive/projects/PXD023140

  Dataset

• Dataset for `Neutrophils have a temporal dichotomous role in acute liver injury and repair` - AT7519 neutrophil depletion

  Campana, L. (Creator), Starkey Lewis, P. J. (Creator), Oremek, M. (Creator), Rinaldi, G. (Creator), Aird, R. (Creator), Man, T. Y. (Creator), Fernando, A. J. (Creator), Simpson, J. (Creator), Homer, N. Z. M. (Creator), Barth, N. (Creator), Addison, M. (Creator), Ashmore-Harris, C. (Creator), Candela, M. E. (Creator), Kilpatrick, A. (Creator), Vermeren, M. (Creator), Robb, C. T. (Creator), Dorward, D. A. (Creator), Lucas, C. (Creator), Forbes, S. (Creator), Gachanja, N. (Creator), Cartwright, J. (Creator), Rossi, A. (Creator), Potey, P. M. D. (Creator) & Livingstone, E. (Creator), Edinburgh DataShare, 1 Jun 2025

  DOI: 10.7488/ds/7835

  Dataset