Research output per year
Research output per year
- 33 results
Search results
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2016
AlphaSeqOpt: optimal allocation of fixed sequencing budget to focal individuals
Hickey, J., 1 Oct 2016Research output: Non-textual form › Software
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AlphaSeqOpt: software package for determining the optimum distribution of sequencing resources
Hickey, J., 1 Oct 2016Research output: Non-textual form › Software
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AlphaSim: Software for Breeding Program Simulation
Hickey, J., 22 Sept 2016Research output: Non-textual form › Software
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AlphaImpute: software package for imputing and phasing genotype data
Hickey, J., 1 Sept 2016Research output: Non-textual form › Software
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AlphaPhase: software package for phasing genotype data
Hickey, J., 1 Sept 2016Research output: Non-textual form › Software
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Broadwick: A Framework for Computational Epidemiology (in java)
O'Hare, A., Lycett, S., Doherty, T., Monteiro Salvador, L. S. & Kao, R. R., 4 Feb 2016Research output: Non-textual form › Software
Open Access -
2015
LSD (Least-Squares Dating) Software: Fast dating using least-squares criteria and algorithms (C++ code)
To, T. H., Jung, M., Lycett, S. & Gascuel, O., 16 Sept 2015Research output: Non-textual form › Software
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AlphaSim: software package for simulating sequence
Hickey, J., 1 Feb 2015Research output: Non-textual form › Software
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poRe: an R package for the visualization and analysis of nanopore sequencing data
Watson, M., Thomson, M., Risse, J., Talbot, R., Santoyo-Lopez, J., Gharbi, K. & Blaxter, M., Jan 2015Research output: Non-textual form › Software
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2014
SPRINT v1.0.7 Software Release
Troup, E., Ghazal, P., Sloan, T., Forster, T. & Cebamanos, L., 29 Sept 2014Research output: Non-textual form › Software
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SPRINT v1.0.6 Software Release
Troup, E., Forster, T., Sloan, T., Ghazal, P. & Cebamanos, L., Jun 2014Research output: Non-textual form › Software
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Discrete Spatial Phylo-Simulator: Individual based modelling code for structured populations including phylogenetic tree outputs (in java).
Lycett, S., 2014, (In preparation)Research output: Non-textual form › Software
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2013
umx: Making Structural Equation Modeling (SEM) in R quick & powerful
Bates, T. C., 18 Nov 2013, (E-pub ahead of print)Research output: Non-textual form › Software
Open Access -
SPRINT v1.0.5 Software Release: SPRINT 1.0.5 - November 2013
Troup, E., Forster, T., Sloan, T., Ghazal, P. & Cebamanos, L., Nov 2013Research output: Non-textual form › Software
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SPRINT v1.0.5 Software Release
Troup, E., Forster, T., Sloan, T., Cebamanos, L. & Ghazal, P., Nov 2013Research output: Non-textual form › Software
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viRome: an R package for the visualization and analysis of viral small RNA sequence datasets
Watson, M., Schnettler, E. & Kohl, A., 24 May 2013Research output: Non-textual form › Software
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SPRINT v1.0.4 Software Release
Troup, E., Mitchell, L., Sloan, T., Robertson, K., Forster, T. & Ghazal, P., Jan 2013Research output: Non-textual form › Software
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kruX: Kruskal-Wallis tests by matrix multiplication
Michoel, T., 2013Research output: Non-textual form › Software
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Meta4 a web application for sharing and annotating metagenomic gene predictions using web services
Richardson, E. J., Escalettes, F., Fotheringham, I., Wallace, R. J. & Watson, M., 2013Research output: Non-textual form › Software
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Robust Correlation Toolbox: Free Matlab toolbox to compute robust correlations
Pernet, C. & Rousselet, G. A., 2013Research output: Non-textual form › Software
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2012
ISMA - The Index-based Subgraph Matching Algorithm
Demeyer, S., Audenaert, P. & Michoel, T., 2012Research output: Non-textual form › Software
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Lemon-Tree: Multi-omics module network inference
Michoel, T. & Bonnet, E., 2012Research output: Non-textual form › Software
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SCHype - Java command line tool for spectral clustering in hypergraphs
Michoel, T., 2012Research output: Non-textual form › Software
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TwixTrix - Matlab and R tool for context-specific transcriptional regulatory network inference
Qi, J. & Michoel, T., 2012Research output: Non-textual form › Software
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2011
CyClus3D - Cytoscape plugin for clustering network motifs in integrated networks
Van Parys, T., Audenaert, P. & Michoel, T., 2011Research output: Non-textual form › Software
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Network Motif Clustering Toolbox - Matlab toolbox for clustering topological motifs in integrated networks
Michoel, T., 2011Research output: Non-textual form › Software
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RNA regulon-omics - Portal for molecular biologists who wish to design detailed hypotheses from a large-scale, top-down analysis of posttranscriptional regulation in yeast
Michoel, T. & Joshi, A., 2011Research output: Non-textual form › Software
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2010
Pathicular - Cytoscape plugin for identifying regulatory path motifs in integrated networks
Joshi, A., Van Parys, T. & Michoel, T., 2010Research output: Non-textual form › Software
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2009
LeMoNe - Java package for learning module networks from gene expression data.
Michoel, T., Joshi, A. & Bonnet, E., 2009Research output: Non-textual form › Software
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MatrixClust - Matlab toolbox for fuzzy clustering of a symmetric matrix, typically the weighted adjacency matrix of an undirected network
Michoel, T., 2009Research output: Non-textual form › Software
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2008
D-MiRaGe - Matlab toolbox for performing ground state and time-dependent Density Matrix Renormalization Group computations for one-dimensional quantum spin systems which need not be translation invariant.
Michoel, T., 2008Research output: Non-textual form › Software
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GaneSh - Java package for 2-way clustering of gene expression data using a Gibbs sampling method.
Joshi, A. & Michoel, T., 2008Research output: Non-textual form › Software
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2006
DNAmelt - Matlab toolbox to compute DNA melting properties using a helicoidal transfer matrix model
Michoel, T., 2006Research output: Non-textual form › Software