Research output per year
Research output per year
- 1 - 50 out of 85 results
Search results
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2023
Accounting for nuclear and mito genome in dairy cattle breeding - a simulation study
Mafra Fortuna, G., Zumbach, B., Johnsson, M., Pocrnic, I. & Gorjanc, G., 21 Nov 2023, bioRxiv, p. 1, 8 p.Research output: Working paper › Preprint
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Hierarchical attention interpretation: an interpretable speech-level transformer for bi-modal depression detection
Deng, Q., Luz, S. & Garcia, S. D. L. F., 23 Sept 2023.Research output: Working paper › Preprint
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Associations between Morbidities in Small But Important Subgroups: A Novel Bayesian Approach for Robust Multimorbidity Analysis with Small Sample Sizes
Romero Moreno, G., Restocchi, V., Fleuriot, J. D., Anand, A., Mercer, S. & Guthrie, B., 7 Aug 2023, p. 1-17, 17 p. (TLDIGITALHEALTH-D-23-00914).Research output: Working paper › Preprint
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Multi-Omic Graph Diagnosis (MOGDx) : A data integration tool to perform classification tasks for heterogeneous diseases
Ryan, B., Marioni, R. E. & Simpson, T. I., 9 Jul 2023, medRxiv, p. 1-11, 11 p.Research output: Working paper › Preprint
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Thermosensitivity of translation underlies the mammalian nocturnal-diurnal switch
Beale, A. D., Rzechorzek, N. M., Mihut, A., Zeng, A., Smyllie, N. J., Pilorz, V., Richardson, R., Bertlesen, M. F., James, N. R., Fazal, S. V., Voysey, Z., Pelletier, J., Crosby, P., Peak-Chew, S. Y., Lancaster, M. A., Hut, R. A. & O'Neill, J., 22 Jun 2023, bioRxiv, 41 p.Research output: Working paper › Preprint
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Structural variants and short tandem repeats impact gene expression and splicing in bovine testis tissue
Bhati, M., Mapel, X. M., Lloret-Villas, A. & Pausch, H., 7 Jun 2023, bioRxiv, at Cold Spring Harbor Laboratory.Research output: Working paper › Preprint
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Open Institute of the African BioGenome Project: Bridging the gap in African biodiversity genomics and bioinformatics
Sharaf, A., Ndiribe, C. C., Omotoriogun, T. C., Abueg, L., Badaou, B., Markey, F. J. B., Beedessee, G., Diouf, D., Duru, V. C., Ebuzome, C., Eziuzo, S. C., Jaufeerally Fakim, Y., Formenti, G., Ghanm, N., Guerfali, F. Z., Houaga, I., Ideozu, J. E., Katee, S. M., Khayi, S., Kuja, J. O., & 15 others, 30 May 2023, (E-pub ahead of print) OSF Preprints, p. 1-18, 18 p.Research output: Working paper › Preprint
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Life-course neighbourhood deprivation and brain structure in older adults: The Lothian Birth Cohort 1936
Baranyi, G., Buchanan, C., Conole, E., Backhouse, E., Muñoz Maniega, S., Valdés Hernández, M. C., Bastin, M. E., Wardlaw, J. M., Deary, I. J., Cox, S. R. & Pearce, J., 17 Apr 2023, medRxiv.Research output: Working paper › Preprint
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Dispersion entropy: A Measure of Irregularity for Graph Signals
Fabila-Carrasco, J. S., Tan, C. & Escudero, J., 31 Mar 2023, ArXiv.Research output: Working paper › Preprint
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Improved prediction of hiking speeds using a data driven approach
Wood, A., Mackaness, W., Simpson, T. I. & Armstrong, J. D., 22 Mar 2023, ArXiv, p. 1-43, 43 p.Research output: Working paper › Preprint
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Over one year of survival difference between distinct cohorts of glioblastoma patients
Poon, M. TC., Woo, P. YM., Helali, A. E. & Brennan, P. M., 20 Mar 2023, medRxiv.Research output: Working paper › Preprint
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Re-analysis of lipidomic data reveals Specialised Pro-Resolution Lipid Mediators (SPMs) to be lower than quantifiable limits of assay in a human model of resolving inflammation
Homer, N. ZM., Andrew, R. & Gilroy, D. W., 8 Mar 2023, bioRxiv.Research output: Working paper › Preprint
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Gentrification and Food Environments: A Rapid Evidence Assessment
Gie, S. & Borthwick, F., 7 Mar 2023, (E-pub ahead of print) medRxiv, p. 1-24, 23 p.Research output: Working paper › Preprint
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Childhood cognitive ability and self-harm and suicide in later life
Iveson, M. H., Ball, E. L., Whalley, H. C., Deary, I. J., Cox, S. R., Batty, G. D., John, A. & McIntosh, A. M., 11 Feb 2023, medRxiv, 30 p.Research output: Working paper › Preprint
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A Time Series Approach to Parkinson’s Disease Classification from EEG
Sahota, A., Roguski, A., Jones, M. W., Rolinski, M., Whone, A., Santos-Rodriguez, R. & Abdallah, Z. S., 20 Jan 2023, ArXiv.Research output: Working paper › Preprint
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Phenome-wide analysis identifies parent-of-origin effects on the human methylome associated with changes in the rate of aging
Gao, C., Amador, C., Walker, R. M., Campbell, A., Madden, R. A., Adams, M. J., Bai, X., Liu, Y., Li, M., Hayward, C., Porteous, D. J., Shen, X., Evans, K. L., Haley, C. S., McIntosh, A. M., Navarro, P. & Zeng, Y., 20 Jan 2023, bioRxiv.Research output: Working paper › Preprint
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Multilingual Alzheimer's Dementia Recognition through Spontaneous Speech: A Signal Processing Grand Challenge
Luz, S., Haider, F., Fromm, D., Lazarou, I., Kompatsiaris, I. & MacWhinney, B., 13 Jan 2023, IEEE, 2 p. (The 2023 IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP 2023)).Research output: Working paper › Preprint
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The role of noise in denoising models for anomaly detection in medical images
Kascenas, A., Sanchez, P., Schrempf, P., Wang, C., Clackett, W., Mikhael, S. S., Voisey, J. P., Goatman, K., Weir, A., Pugeault, N., Tsaftaris, S. A. & O'Neil, A. Q., 2023, ArXiv.Research output: Working paper › Preprint
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2022
The benefits and perils of import in small cattle breeding programs
Obsteter, J., Jenko, J., Pocrnic, I. & Gorjanc, G., 12 Dec 2022, (E-pub ahead of print) bioRxiv, at Cold Spring Harbor Laboratory.Research output: Working paper › Preprint
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Brain connectivity changes underlying depression and fatigue in relapsing-remitting multiple sclerosis: a systematic review
Kampaite, A., Gustafsson, R., York, E. N., Foley, P., MacDougall, N., Bastin, M. E., Chandran, S., Waldman, A. & Meijboom, R., 7 Dec 2022, (Submitted).Research output: Working paper › Preprint
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A novel deep learning method for large-scale analysis of bone marrow adiposity using UK Biobank Dixon MRI data
Morris, D. M., Wang, C., Papanastasiou, G., Gray, C. D., Badr, S., Paccou, J., Semple, S. I. K., MacGillivray, T. & Cawthorn, W. P., 6 Dec 2022, medRxiv, (medRxiv).Research output: Working paper › Preprint
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Developing best practices for genotyping-by-sequencing analysis using linkage maps as benchmarks
Taniguti, C., Taniguti, L., Amadeu, R., Mollinari, M., Pereira, G., Riera-Lizarazu, O., Lau, J., Byrne, D., Gesteira, G., De Paula Oliveira, T., Ferreira, G. & Garcia, A., 25 Nov 2022, Cold Spring Publishing LLC, p. 1-24, 24 p. (bioRxiv).Research output: Working paper › Preprint
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Dementia diagnosis and prevalence in the Lothian Birth Cohort 1936 using medical data linkage
Mullin, D., Stirland, L., Buchanan, E., Lothian, NHS., Cox, S. R., Deary, I. J., Centre, A., Centre, A., Page, D., Centre, A., Shenkin, S. D., Szalek, A., Taylor, A., Weatherdon, G., Wilkinson, T. & Russ, T., 18 Nov 2022, medRxiv.Research output: Working paper › Preprint
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West Nile Virus spread in Europe - phylogeographic pattern analysis and key drivers
Lu, L., Zhang, F., Oude Munnink, B., Munger, E., Sikkema, R., Pappa, S., Tsioka, K., Sinigaglia, A., Dal Molin, E., Shih, B., Günther, A., Pohlmann, A., Beer, M., Taylor, R. A., Bartumeus, F., Woolhouse, M., Aarestrup, F., Barzon, L., Papa, A., Lycett, S., & 1 others, 13 Nov 2022, bioRxiv.Research output: Working paper › Preprint
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Maternal cardiometabolic markers in pregnancy on child emotional and behaviour trajectories
Kwok, J., Khanolainen, D., Speyer, L., Murray, A. L., Torppa, M. & Auyeung, B., 1 Nov 2022, Social Science Research Network (SSRN), (SSRN Electronic Journal).Research output: Working paper › Preprint
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COVID-19 among adults living with HIV: Correlates of mortality in a general population in a resource-limited setting
Kassanjee, R., Davies, M-A., Ngwenya, O., Osei-Yeboah, R., Jacobs, T., Morden, E., Timmerman, V., Britz, S., Mendelson, M., Taljaard, J., Riou, J., Boulle, A., Tiffin, N. & Zinyakatira, N., 17 Oct 2022, (medRxiv).Research output: Working paper › Preprint
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Association of Extent of Resection and Functional Outcomes in Diffuse Low-Grade Glioma: Systematic Review & Meta-Analysis
Elsheikh, M., Bridgman, E., Lavrador, J. P., Lammy, S. & Poon, M. T. C., 27 Sept 2022, medRxiv.Research output: Working paper › Preprint
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Uptake of Sotrovimab for prevention of severe COVID-19 and its safety in the community in England
Patone, M., Snelling, A. JHL., Tibble, H., Coupland, C., Sheikh, A. & Hippisley-Cox, J., 17 Aug 2022, medRxiv.Research output: Working paper › Preprint
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Use of a novel flipped classroom intervention to increase medical students’ knowledge of physical activity guidelines
Gilbert, G., Sharland, E., Harper, A. M., Fawkner, S., Kelly, P., Harden, J., Osborne, S. A. & Adams, J. M., 15 Aug 2022, MedEdPublish, (MedEdPublish).Research output: Working paper › Preprint
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Bilingualism in autism: Evidence and recommendations for education practice
Digard, B. & Davis, R., 2 Aug 2022, OSF Preprints, 2 p.Research output: Working paper › Preprint
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Genomic selection for genotype performance and stability using information on multiple traits and multiple environments
Bančič, J., Ovenden, B., Gorjanc, G. & Tolhurst, D., 12 Jul 2022, (E-pub ahead of print) Research Square , p. 1-30, 29 p. (TAG Theoretical and Applied Genetics).Research output: Working paper › Preprint
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A method for partitioning trends in genetic mean and variance to understand breeding practices
De Paula Oliveira, T., Obsteter, J., Pocrnic, I., Heslot, N. & Gorjanc, G., 30 Jun 2022, bioRxiv, at Cold Spring Harbor Laboratory, (bioRxiv).Research output: Working paper › Preprint
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The suppressive potential of a gene drive in populations of invasive social wasps is currently limited
Meiborg, A. B., Faber, N., Taylor, B. A., Harpur, B. A. & Gorjanc, G., 30 Jun 2022, bioRxiv, p. 1-15, 15 p.Research output: Working paper › Preprint
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The RNA-binding landscape of HAX1 protein indicates its involvement in ribosome biogenesis and translation
Balcerak, A., Macech-Klicka, E., Wakula, M., Tomecki, R., Goryca, K., Rydzanicz, M., Chmielarczyk, M., Szostakowska-Rodzos, M., Wisniewska, M., Lyczek, F., Helwak, A., Tollervey, D., Kudla, G. & Grzybowska, E. A., 20 Jun 2022, Molecular Biology and Evolution, 30 p.Research output: Working paper › Preprint
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Strand-resolved mutagenicity of DNA damage and repair
Anderson, C., Talmane, L., Luft, J., Nicholson, M. D., Connelly, J., Pich, O., Campbell, S., Sundaram, V., Connor, F., Ginnno, P. A., Lopez-Bigas, N., Flicek, P., Semple, C. A., Odom, D. T., Aitken, S. J. & Taylor, M. S., 10 Jun 2022, bioRxiv.Research output: Working paper › Preprint
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Computer-assisted analysis of routine EEG to identify hidden biomarkers of epilepsy: Protocol for a systematic review
Lemoine, É., Briard, J. N., Rioux, B., Podbielski, R., Nauche, B., Toffa, D., Keezer, M., Lesage, F., Nguyen, D. K. & Assi, E. B., 6 Jun 2022, medRxiv.Research output: Working paper › Preprint
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Optimisation of the core subset for the APY approximation of genomic relationships
Pocrnic, I., Lindgren, F., Tolhurst, D., Herring, WO. & Gorjanc, G., 6 Jun 2022, bioRxiv, at Cold Spring Harbor Laboratory, (bioRxiv).Research output: Working paper › Preprint
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Ontology-based and weakly supervised rare disease phenotyping from clinical notes
Dong, H., Suárez-Paniagua, V., Zhang, H., Wang, M., Casey, A., Davidson, E., Chen, J., Alex, B., Whiteley, W. & Wu, H., 1 May 2022, ArXiv.Research output: Working paper › Preprint
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Life-course exposure to air pollution and biological ageing in the Lothian Birth Cohort 1936
Baranyi, G., Deary, I. J., McCartney, D. L., Harris, S., Shortt, N., Reis, S., Russ, T., Ward Thompson, C., Vieno, M., Cox, S. R. & Pearce, J., 18 Apr 2022, medRxiv.Research output: Working paper › Preprint
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Integrative single cell and spatial transcriptomic analysis reveal reciprocal microglia-plasma cell crosstalk in the mouse brain during chronic Trypanosoma brucei infection
Quintana, J., Chandrasegaran, P., Sinton, M., Briggs, E. M., Otto, T. D., Heslop, R., Bentley-Abbot, C., Loney, C., de Lecea, L., Mabbott, N. & MacLeod, A., 28 Mar 2022, (Accepted/In press) bioRxiv, at Cold Spring Harbor Laboratory, (bioRxiv).Research output: Working paper › Preprint
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Comparison of rule- and ordinary differential equation-based dynamic model of DARPP-32 signalling network
Wysocka, E. M., Page, M., Snowden, J. & Simpson, T. I., 27 Mar 2022, bioRxiv, 24 p.Research output: Working paper › Preprint
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Community views on medication use in fragile X syndrome
Eley, S., McKechanie, A. G. & Stanfield, A. C., 25 Mar 2022, Research Square , 10 p.Research output: Working paper › Preprint
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Automated Clinical Coding: What, Why, and Where We Are?
Dong, H., Falis, M., Whiteley, W., Alex, B., Ji, S., Chen, J. & Wu, H., 21 Mar 2022, ArXiv, 8 p.Research output: Working paper › Preprint
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Hypoxia shapes the immune landscape in lung injury promoting inflammation persistence
Mirchandani, A. S., Jenkins, S. J., Bain, C. C., Lawson, H., Coelho, P., Murphy, F., Griffith, D., Zhang, A., Sanchez-Garcia, M. A., Reyes, L., Morrison, T., Arienti, S., Sadiku, P., Watts, E. R., Dickinson, R. S., Clark, S., Ly, T., Lewis, D., Kelly, V., Spanos, C., & 21 others, 12 Mar 2022, bioRxiv, p. 1-53, 53 p.Research output: Working paper › Preprint
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Detection of multiple retinal diseases in ultra-widefield fundus images using deep learning: data-driven identification of relevant regions
Engelmann, J., McTrusty, A. D., MacCormick, I. J. C., Pead, E., Storkey, A. & Bernabeu, M. O., 11 Mar 2022, ArXiv.Research output: Working paper › Preprint
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Motor Neuron Disease is not clustered or associated with socioeconomic deprivation in Scotland
Chang, Y-T., Kearns, P. K. A., Newton, J., Larraz, J., Forbes, D., Beswick, E., Leighton, D., Langlands, G., Swingler, R. J., Chandran, S. & Pal, S., 28 Feb 2022, medRxiv.Research output: Working paper › Preprint
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The effects of caloric restriction on adipose tissue and metabolic health are sex- and age-dependent
Suchacki, K., Thomas, B. J., Fyfe, C., Tavares, A. A. S., Sulston, R., Lovdel, A., Woodward, H. J., Han, X., Mattiucci, D., Brain, E. J., Alcaide-Corral, C. J., Gray, G. A., Whitfield, P. D., Stimson, R. H., Morton, N. M., Johnstone, A. M. & Cawthorn, W. P., 22 Feb 2022, bioRxiv, (bioRxiv).Research output: Working paper › Preprint
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Electronic Informed Consent: effects on enrolment, practical and economic benets, challenges, and drawbacks. Studies within Randomised Controlled Trials. Systematic Review.
Mazzochi, A. T., Dennis, M. & Chun, H-Y. Y., 10 Feb 2022, Research Square .Research output: Working paper › Preprint
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Rare and population-specific functional variation across pig lines
Ros-Freixedes, R., Valente, B. D., Chen, C-Y., Herring, W. O., Gorjanc, G., Hickey, J. M. & Johnsson, M., 2 Feb 2022, bioRxiv, 47 p.Research output: Working paper › Preprint
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User acceptability of saliva and gargle samples for identifying COVID-19 positive high-risk workers
McLennan, K., Barton, E., Lang, C., Adams, I. R., McAllister, G. E. M., Reijns, M. A. M., Templeton, K., Johannessen, I., Leckie, A. & Gilbert, N., 30 Jan 2022, medRxiv.Research output: Working paper › Preprint
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