Deanery of Biomedical Sciences

Search results

• Amyloid Beta and Tau Cooperate to Cause Reversible Behavioral and Transcriptional Deficits in a Model of Alzheimer's Disease - RNAseq data

  Spires-Jones, T. (Creator) & Dando, O. (Creator), EMBL's European Bioinformatics Institute, 2019

  https://www.ebi.ac.uk/biostudies/arrayexpress/studies/E-MTAB-7856

  Dataset

• Temporal analysis of RNA turnover in Interferon Gamma treated bone marrow-derived macrophages

  Robertson, K. (Creator) & Ghazal, P. (Creator), Edinburgh DataShare, 21 Jun 2016

  DOI: 10.7488/ds/1428

  Dataset

• C57Bl6/J mouse EEG recordings

  Oren, I. (Creator), Brown, R. (Creator), Osterweil, E. (Owner) & Meijer, D. (Owner), Edinburgh DataVault, 2018

  DOI: 10.7488/9709d7b4-84c3-467f-b538-af50cc520892

  Dataset

• APP NL/F - 1 year rodent EEG and video recordings. Cerebellum reference

  Oren, I. (Creator) & Brown, R. (Creator), Edinburgh DataVault, 22 Jun 2018

  DOI: 10.7488/a1dab399-eeb6-4c5d-934e-c702f4e3f6b9

  Dataset

• APP NL/F - 8 month rodent EEG and video recordings

  Oren, I. (Creator) & Brown, R. (Owner), Edinburgh DataVault, 22 Jun 2018

  DOI: 10.7488/839bb0e2-2927-4749-83c5-faba98c2ccc6

  Dataset

• FMR1 knock-out mouse EEG recordings

  Oren, I. (Creator), Brown, R. (Creator) & Osterweil, E. (Owner), Edinburgh DataVault, 2018

  DOI: 10.7488/e79d76fe-fd66-4cc6-ad4a-2b71ff3c607a

  Dataset

• APP NL/F - 1 year rodent EEG and video recordings. Cerebellum reference. Donepezil administration

  Oren, I. (Creator) & Brown, R. (Creator), Edinburgh DataVault, 29 Jun 2018

  DOI: 10.7488/0fbe4409-56ec-42ec-807f-8234541dc239

  Dataset

• Synthetic cell-based patterning systems and their applications in stem cell differentiation

  Glykofrydis, F. (Owner), Popravko, A. (Creator), Dzierzak, E. (Owner), Davies, J. (Owner), Romanowski, A. (Data Manager) & Zielinski, T. (Data Manager), Edinburgh DataVault, 30 Jan 2021

  DOI: 10.7488/387d2274-5678-4626-a138-732ba80a767c

  Dataset

• A system for in vivo ablation of MeCP2-deficient neurons in the Rett Syndrome mouse model

  Paton, K. (Owner), Selfridge, J. (Creator), Guy, J. (Researcher), Connelly, J. (Researcher), Waterfall, M. (Researcher), Kelly, D. (Researcher), Davies, J. (Supervisor), Smith, A. (Supervisor), Rosser, S. (Supervisor), Bird, A. (Owner), Romanowski, A. (Data Manager), Zielinski, T. (Data Manager) & Paton, K. (Owner), Edinburgh DataVault, 30 Apr 2021

  DOI: 10.7488/139e57b5-25ed-4ad2-b9bc-d323305ede21

  Dataset

• LGI2 DataVault data

  Oren, I. (Creator), Meijer, D. (Owner) & Brown, R. (Creator), Edinburgh DataVault, 2018

  DOI: 10.7488/8b0ca52c-f086-40bb-af2a-a551f6bc00f4

  Dataset

• APP NL/F - 1 year rodent EEG and video recordings. Cortex reference

  Oren, I. (Creator) & Brown, R. (Creator), Edinburgh DataVault, 29 Jun 2018

  DOI: 10.7488/fc6ff337-6d54-4166-926c-1fa7317a9cb5

  Dataset

• LTP data from MAPT-AD experiment and APP/PS1 experiment

  Oren, I. (Creator) & Spires-Jones, T. (Owner), Edinburgh DataVault, 2018

  DOI: 10.7488/bacc399c-0d03-41d6-92b9-a180d6dc7b84, https://datavault.ed.ac.uk/

  Dataset

• J20 rodent EEG and video recordings

  Oren, I. (Creator) & Brown, R. (Creator), Edinburgh DataVault, 2018

  DOI: 10.7488/e2c30baf-823e-4ec2-a104-013549da58bc

  Dataset

• Temporal analysis of RNA turnover in Interferon Gamma treated bone marrow-derived macrophages

  Robertson, K. (Creator) & Ghazal, P. (Creator), National Center for Biotechnology Information (Gene Expression Omnibus), 7 Mar 2016

  DOI: 10.7488/210e1946-2590-49ec-8a1d-a31667d1b3bb, https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE63290 and one more link, http://10.1371/journal.pbio.1002364 (show fewer)

  Dataset

• Spires-Jones archived raw lab data 2013-2018

  Spires-Jones, T. (Creator) & Spires-Jones, T. (Data Manager), Edinburgh DataVault, 1 Sept 2018

  https://datavault.ed.ac.uk/

  Dataset

• E-MTAB-8164 - RNAseq of young adult C. elegans animals fed on three different bacterial diets, E. coli OP50, B. subtilis PXN21 and a mixture of both

  Goya, E. (Creator), Romanowski, A. (Depositor) & Doitsidou, M. (Project Leader), ArrayExpress Archive of Functional Genomics Data, 14 Jan 2020

  https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-8164

  Dataset

• Probiotic Bacillus subtilis Protects against a-Synuclein Aggregation in C. elegans (Goya ME et al., Cell Reports, 2020)

  Goya, E. (Creator) & Romanowski, A. (Depositor), The University of Edinburgh, 10 Aug 2020

  https://publicomero.bio.ed.ac.uk/webclient/?show=project-58

  Dataset

• Rapid Evolution of Colistin Resistance in a Bioreactor Model of Infection of Klebsiella pneumoniae

  Dorai-Schneiders, T. (Creator), Waclaw, B. (Creator), Jiménez-Castellanos, J. (Creator) & Meynert, A. (Creator), Edinburgh DataShare, 19 Jan 2024

  DOI: 10.7488/ds/3800, https://doi.org/10.1101/2022.10.03.510619

  Dataset

• eHistology Atlas: Plates S1-S6 Coronal Supplement (E11.5-E15.5)

  Graham, E. (Creator), Moss, J. (Creator), Burton, N. (Creator), Roochun, Y. (Creator), Armit, C. (Creator), Richardson, L. (Creator) & Baldock, R. (Creator), Edinburgh DataShare, 19 Dec 2016

  https://datashare.is.ed.ac.uk/handle/10283/2198 and one more link, http://www.emouseatlas.org/emap/eHistology/supplement (show fewer)

  Dataset

• Microarray data CEL files supporting the paper "Microarray profiling emphasizes transcriptomic differences between hippocampal in vivo tissue and in vitro cultures"

  King, D. (Creator), Edinburgh DataShare, 9 Apr 2021

  DOI: 10.7488/ds/3016

  Dataset

• Supplementary files supporting the paper "Microarray profiling emphasizes transcriptomic differences between hippocampal in vivo tissue and in vitro cultures"

  King, D. (Creator), Edinburgh DataShare, 9 Apr 2021

  DOI: 10.7488/ds/3015

  Dataset

• Timing of SMN replacement therapies in models of spinal muscular atrophy: a systematic review and meta-analysis

  Chaytow, H. (Creator), Motyl, A. (Creator), Huang, N. (Creator), Wong, C. (Creator), Currie, G. (Creator), Bahor, Z. (Creator), Sena, E. (Creator) & Gillingwater, T. (Creator), Edinburgh DataShare, 13 Oct 2023

  DOI: 10.7488/ds/7526, https://www.crd.york.ac.uk/prospero/display_record.php?ID=CRD42020200180&ID=CRD42020200180

  Dataset

• Neocortex saves energy by reducing coding precision during food scarcity

  Rochefort, N. (Creator), Padamsey, Z. (Creator) & Katsanevaki, D. (Creator), Edinburgh DataShare, 30 Nov 2021

  DOI: 10.7488/ds/3214, https://doi.org/10.1016/j.neuron.2021.10.024

  Dataset

• Data on the composition of four balanced and four unbalanced series of E12.5 fetal mouse chimaeras

  Flockhart, J. H. (Creator), Tang, P. (Creator), MacKay, G. E. (Creator), Keighren, M. A. (Creator), Kissenpfennig, A. (Creator), Wilson, L. (Creator), Pratt, T. (Creator), Mason, J. (Creator), Price, D. (Creator) & West, J. (Creator), Edinburgh DataShare, 6 Jun 2017

  DOI: 10.7488/ds/2056

  Dataset

• Data for re-evaluation of the causes of variation among mouse aggregation chimaeras

  West, J. (Creator), MacKay, G. E. (Creator), Flockhart, J. H. (Creator), Keighren, M. A. (Creator), Everett, C. A. (Creator) & Tang, P. (Creator), Edinburgh DataShare, 31 May 2019

  DOI: 10.7488/ds/2540

  Dataset

• Kidney vascularisation reviews - summary table

  Davies, J. (Creator) & Munro, D. (Creator), Edinburgh DataShare, 16 Feb 2018

  DOI: 10.7488/ds/2307

  Dataset

• One Health and the COVID-19 pandemic: Lessons for the control of epidemics including Tryapanosomiasis

  MacLeod, E. T. (Creator), Kasozi, K. I. (Creator) & Welburn, S. C. (Creator), Edinburgh DataShare, 3 Jun 2025

  DOI: 10.7488/ds/7743

  Dataset

• Figure 4 Gordon et al (2016) A fine balance of synaptophysin levels underlies efficient retrieval of synaptobrevin II to synaptic vesicles (PLOS ONE)

  Cousin, M. (Creator) & Gordon, S. (Creator), Edinburgh DataShare, 15 Jan 2016

  DOI: 10.7488/ds/1312

  Dataset

• Patient derived cancer-associated fibroblasts from non-small cell lung cancer undergo phenotypic drift in culture

  Akram, A. (Creator), Dorward, D. (Creator), Koppensteiner, L. (Creator), O'Connor, R. (Creator), Jones, P. (Creator) & Mathieson, L. (Creator), Edinburgh DataShare, 14 Jan 2025

  DOI: 10.7488/ds/7767

  Dataset

• Task-anchored grid cell firing is selectively associated with successful path integration-dependent behaviour

  Clark, H. (Creator) & Nolan, M. (Creator), Edinburgh DataShare, 23 Feb 2024

  DOI: 10.7488/ds/7684, https://elifesciences.org/reviewed-preprints/89356

  Dataset

• Generation Scotland Age x Sex Epigenome Wide Association Study Summary Statistics

  Boutin, T. (Creator), Morris, S. (Creator), Campbell, A. (Creator), Murray, A. (Creator), Whalley, H. (Creator), Hayward, C. (Creator), Evans, K. (Creator), Chandra, T. (Creator), Deary, I. (Creator), McIntosh, A. (Creator), Yang, J. (Creator), Visscher, P. (Creator), McRae, A. (Creator), Marioni, R. (Creator), Porteous, D. (Creator), McCartney, D. (Creator), Zhang, F. (Creator), Hillary, R. (Creator), Zhang, Q. (Creator), Stevenson, A. (Creator), Walker, R. (Creator) & Bermingham, M. (Creator), Edinburgh DataShare, 31 Jan 2020

  DOI: 10.7488/ds/2709

  Dataset

• Structural, functional and metabolic brain differences between groups with opposite gender identity and sexual orientation. A systematic review on the neuroimaging literature up to 2018

  Frigerio, A. (Creator), Ballerini, L. (Creator) & Valdes Hernandez, M. (Creator), Edinburgh DataShare, 13 Aug 2018

  DOI: 10.7488/ds/2412

  Dataset

• Simplified biochemical model of synaptic plasticity, extended with Calcium-Induced Calcium Release

  Diamantopoulos, M. (Creator), Herpich, G. (Creator), Xie, Y. (Creator) & Stefan, M. (Creator), Edinburgh DataShare, 6 Aug 2018

  DOI: 10.7488/ds/2404

  Dataset

• Spatial computational model of calcium signalling in the dendritic spines and its relation to Alzheimer's Disease

  Arora, S. (Creator) & Stefan, M. (Creator), Edinburgh DataShare, 2 Aug 2018

  DOI: 10.7488/ds/2400

  Dataset

• Computational modelling and simulation of the interaction between NMDA receptors and CaMKII in the postsynaptic neuron

  Stefan, M. (Creator) & Roman Garcia, S. (Creator), Edinburgh DataShare, 7 Jun 2017

  DOI: 10.7488/ds/2058

  Dataset

• A Celebration of Scottish Health Cohort Studies: Participants' attitudes towards data research

  Beange, I. (Creator), McIntosh, A. (Creator), Kirkham, E. (Creator), Fletcher-Watson, S. (Creator), Lawrie, S. (Creator), Batty, G. D. (Creator), Boardman, J. (Creator), Black, C. (Creator) & Porteous, D. (Creator), Edinburgh DataShare, 16 Dec 2019

  DOI: 10.7488/ds/2728

  Dataset

• Data from: Automated single particle detection and tracking for large microscopy datasets

  Wilson, R. S. (Creator), Yang, L. (Creator), Dun, A. (Creator), Smyth, A. M. (Creator), Duncan, R. R. (Creator), Rickman, C. (Creator) & Lu, W. (Creator), Dryad, 22 Apr 2016

  DOI: 10.5061/dryad.6kg29, https://datadryad.org/stash/dataset/doi:10.5061/dryad.6kg29

  Dataset

• Images for "Functional Transport of Organic Anions and Cations in the Murine Mesonephros"

  Lawrence, L. (Creator), Smith, J. (Creator) & Davies, J. (Creator), Edinburgh DataShare, 12 Jul 2018

  DOI: 10.7488/ds/2377

  Dataset

• Circadian and brain state modulation of network hyperexcitability in Alzheimer's disease

  Oren, I. (Creator), Ribchester, R. (Creator), Gonzalez Sulser, A. (Creator), Brown, R. (Creator), Jones, M. (Creator), Chou, R. C. (Creator) & Hemonnot, A. (Creator), Edinburgh DataShare, 27 Mar 2018

  https://datashare.is.ed.ac.uk/handle/10283/3586

  Dataset

• Methods to quantify and visualize venules using structural magnetic resonance imaging scans

  Jochems, A. (Creator), Blair, G. (Creator), Stringer, M. (Creator), Thrippleton, M. (Creator), Clancy, U. (Creator), Chappell, F. (Creator), Brown, R. (Creator), Jaime García, D. (Creator), Hamilton, O. (Creator), Morgan, A. (Creator), Marshall, I. (Creator), Hetherington, K. (Creator), Wiseman, S. (Creator), MacGillivray, T. (Creator), Valdes Hernandez, M. (Creator), Doubal, F. (Creator) & Wardlaw, J. (Creator), Edinburgh DataShare, 21 Jan 2020

  DOI: 10.7488/ds/2755

  Dataset

• Whole blood mRNA expression profiling of host molecular networks in neonatal sepsis

  Smith, C. (Creator), Ghazal, P. (Creator), Dickinson, P. (Creator), Craigon, M. (Creator), Forster, T. (Hosting Institution) & Ross, A. (Creator), National Center for Biotechnology Information (Gene Expression Omnibus), 12 Aug 2014

  http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE25504

  Dataset

• Circadian Clock Experiments: rhythmic transcriptome of dark-grown, temperature-entrained seedlings

  Hall, A. (Creator) & Millar, A. (Creator), University of Edinburgh, 2005

  http://affymetrix.arabidopsis.info/narrays/experimentpage.pl?experimentid=2

  Dataset

• Innervation of the developing kidney in vivo and in vitro

  Tarnick, J. (Creator) & Davies, J. (Creator), Edinburgh DataShare, 17 May 2023

  DOI: 10.7488/ds/3860

  Dataset

• Prenatal anatomical and molecular changes in a mouse model of Spinal Muscular Atrophy: thesis movies

  MOTYL, A. (Creator), Edinburgh DataShare, 17 Nov 2021

  DOI: 10.7488/ds/3183

  Dataset

• Comparative analysis of small RNAs released by the filarial nematode Litomosoides sigmodontis in vitro and in vivo

  Quintana, J. (Creator), Buck, A. (Creator), Ivens, A. (Creator) & Kumar, S. (Creator), National Center for Biotechnology Information (Gene Expression Omnibus), 18 Nov 2019

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE140538

  Dataset

• Summary statistics from epigenome-wide association studies and meta-analysis comparing APOE ε4 and APOE ε2 allele carriers in Generation Scotland

  Hayward, C. (Creator), Porteous, D. (Creator), McIntosh, A. (Creator), Marioni, R. (Creator), Evans, K. (Creator), Campbell, A. (Creator), Walker, R. (Creator), Vaher, K. (Creator), Bermingham, M. (Creator), Morris, S. (Creator), Bretherick, A. (Creator), Zeng, Y. (Creator), Rawlik, K. (Creator), Amador, C. (Creator) & Haley, C. (Creator), Edinburgh DataShare, 10 Nov 2020

  DOI: 10.7488/ds/2948

  Dataset

• Image analysis macros for array tomography

  Spires-Jones, T. (Creator), Edinburgh DataShare, 24 Jul 2019

  DOI: 10.7488/ds/2592, https://doi.org/10.1101/393405

  Dataset

• Multi-method genome and epigenome wide studies of inflammatory protein levels in healthy older adults - OSCA EWAS Proteins

  Harris, S. (Creator), Patxot, M. (Creator), Ojavee, S. E. (Creator), Zhang, Q. (Creator), Liewald, D. (Creator), Ritchie, C. (Creator), Evans, K. (Creator), Tucker-Drob, E. M. (Creator), Wray, N. (Creator), McRae, A. (Creator), Visscher, P. (Creator), Deary, I. (Creator), Robinson, M. (Creator), Marioni, R. (Creator), Stevenson, A. (Creator), Hillary, R. (Creator), Trejo baños, D. (Creator), Kousathanas, A. (Creator) & Mccartney, D. (Creator), Edinburgh DataShare, 16 Jul 2020

  DOI: 10.7488/ds/2817

  Dataset

• Multi-method genome and epigenome wide studies of inflammatory protein levels in healthy older adults - Linear Regression GWAS Proteins

  Stevenson, A. (Creator), Patxot, M. (Creator), Ojavee, S. E. (Creator), Zhang, Q. (Creator), Liewald, D. (Creator), Ritchie, C. (Creator), Evans, K. (Creator), Wray, N. (Creator), McRae, A. (Creator), Visscher, P. (Creator), Deary, I. (Creator), Robinson, M. (Creator), Marioni, R. (Creator), Tucker-Drob, E. (Creator), Hillary, R. (Creator), Trejo baños, D. (Creator), Kousathanas, A. (Creator), Mccartney, D. (Creator) & Harris, S. (Creator), Edinburgh DataShare, 16 Jul 2020

  DOI: 10.7488/ds/2814

  Dataset

• Multi-method genome and epigenome wide studies of inflammatory protein levels in healthy older adults - BayesR+ GWAS Proteins

  Ojavee, S. E. (Creator), Zhang, Q. (Creator), Liewald, D. (Creator), Evans, K. (Creator), Tucker-Drob, E. (Creator), Wray, N. (Creator), McRae, A. (Creator), Visscher, P. (Creator), Deary, I. (Creator), Robinson, M. (Creator), Marioni, R. (Creator), Ritchie, C. (Creator), Hillary, R. (Creator), Trejo baños, D. (Creator), Kousathanas, A. (Creator), Mccartney, D. (Creator), Harris, S. (Creator), Stevenson, A. (Creator) & Patxot, M. (Creator), Edinburgh DataShare, 16 Jul 2020

  DOI: 10.7488/ds/2854

  Dataset