Deanery of Biomedical Sciences

Search results

• Amyloid Beta and Tau Cooperate to Cause Reversible Behavioral and Transcriptional Deficits in a Model of Alzheimer's Disease - RNAseq data

  Spires-Jones, T. (Creator) & Dando, O. (Creator), EMBL's European Bioinformatics Institute, 2019

  https://www.ebi.ac.uk/biostudies/arrayexpress/studies/E-MTAB-7856

  Dataset

• Temporal analysis of RNA turnover in Interferon Gamma treated bone marrow-derived macrophages

  Robertson, K. (Creator) & Ghazal, P. (Creator), Edinburgh DataShare, 21 Jun 2016

  DOI: 10.7488/ds/1428

  Dataset

• LTP data from MAPT-AD experiment and APP/PS1 experiment

  Oren, I. (Creator) & Spires-Jones, T. (Owner), Edinburgh DataVault, 2018

  DOI: 10.7488/bacc399c-0d03-41d6-92b9-a180d6dc7b84, https://datavault.ed.ac.uk/

  Dataset

• C57Bl6/J mouse EEG recordings

  Oren, I. (Creator), Brown, R. (Creator), Osterweil, E. (Owner) & Meijer, D. (Owner), Edinburgh DataVault, 2018

  DOI: 10.7488/9709d7b4-84c3-467f-b538-af50cc520892

  Dataset

• APP NL/F - 8 month rodent EEG and video recordings

  Oren, I. (Creator) & Brown, R. (Owner), Edinburgh DataVault, 22 Jun 2018

  DOI: 10.7488/839bb0e2-2927-4749-83c5-faba98c2ccc6

  Dataset

• FMR1 knock-out mouse EEG recordings

  Oren, I. (Creator), Brown, R. (Creator) & Osterweil, E. (Owner), Edinburgh DataVault, 2018

  DOI: 10.7488/e79d76fe-fd66-4cc6-ad4a-2b71ff3c607a

  Dataset

• APP NL/F - 1 year rodent EEG and video recordings. Cerebellum reference. Donepezil administration

  Oren, I. (Creator) & Brown, R. (Creator), Edinburgh DataVault, 29 Jun 2018

  DOI: 10.7488/0fbe4409-56ec-42ec-807f-8234541dc239

  Dataset

• APP NL/F - 1 year rodent EEG and video recordings. Cerebellum reference

  Oren, I. (Creator) & Brown, R. (Creator), Edinburgh DataVault, 22 Jun 2018

  DOI: 10.7488/a1dab399-eeb6-4c5d-934e-c702f4e3f6b9

  Dataset

• A system for in vivo ablation of MeCP2-deficient neurons in the Rett Syndrome mouse model

  Paton, K. (Owner), Selfridge, J. (Creator), Guy, J. (Researcher), Connelly, J. (Researcher), Waterfall, M. (Researcher), Kelly, D. (Researcher), Davies, J. (Supervisor), Smith, A. (Supervisor), Rosser, S. (Supervisor), Bird, A. (Owner), Romanowski, A. (Data Manager), Zielinski, T. (Data Manager) & Paton, K. (Owner), Edinburgh DataVault, 30 Apr 2021

  DOI: 10.7488/139e57b5-25ed-4ad2-b9bc-d323305ede21

  Dataset

• Synthetic cell-based patterning systems and their applications in stem cell differentiation

  Glykofrydis, F. (Owner), Popravko, A. (Creator), Dzierzak, E. (Owner), Davies, J. (Owner), Romanowski, A. (Data Manager) & Zielinski, T. (Data Manager), Edinburgh DataVault, 30 Jan 2021

  DOI: 10.7488/387d2274-5678-4626-a138-732ba80a767c

  Dataset

• LGI2 DataVault data

  Oren, I. (Creator), Meijer, D. (Owner) & Brown, R. (Creator), Edinburgh DataVault, 2018

  DOI: 10.7488/8b0ca52c-f086-40bb-af2a-a551f6bc00f4

  Dataset

• J20 rodent EEG and video recordings

  Oren, I. (Creator) & Brown, R. (Creator), Edinburgh DataVault, 2018

  DOI: 10.7488/e2c30baf-823e-4ec2-a104-013549da58bc

  Dataset

• APP NL/F - 1 year rodent EEG and video recordings. Cortex reference

  Oren, I. (Creator) & Brown, R. (Creator), Edinburgh DataVault, 29 Jun 2018

  DOI: 10.7488/fc6ff337-6d54-4166-926c-1fa7317a9cb5

  Dataset

• Temporal analysis of RNA turnover in Interferon Gamma treated bone marrow-derived macrophages

  Robertson, K. (Creator) & Ghazal, P. (Creator), National Center for Biotechnology Information (Gene Expression Omnibus), 7 Mar 2016

  DOI: 10.7488/210e1946-2590-49ec-8a1d-a31667d1b3bb, https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE63290 and one more link, http://10.1371/journal.pbio.1002364 (show fewer)

  Dataset

• Spires-Jones archived raw lab data 2013-2018

  Spires-Jones, T. (Creator) & Spires-Jones, T. (Data Manager), Edinburgh DataVault, 1 Sept 2018

  https://datavault.ed.ac.uk/

  Dataset

• E-MTAB-8164 - RNAseq of young adult C. elegans animals fed on three different bacterial diets, E. coli OP50, B. subtilis PXN21 and a mixture of both

  Goya, E. (Creator), Romanowski, A. (Depositor) & Doitsidou, M. (Project Leader), ArrayExpress Archive of Functional Genomics Data, 14 Jan 2020

  https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-8164

  Dataset

• Probiotic Bacillus subtilis Protects against a-Synuclein Aggregation in C. elegans (Goya ME et al., Cell Reports, 2020)

  Goya, E. (Creator) & Romanowski, A. (Depositor), The University of Edinburgh, 10 Aug 2020

  https://publicomero.bio.ed.ac.uk/webclient/?show=project-58

  Dataset

• Whole slide images of armadillo liver from M.leprae dataset

  Kendall, T. (Creator) & Rambukkana, A. (Creator), Edinburgh DataShare, 31 Mar 2023

  DOI: 10.7488/ds/3147

  Dataset

• Fan cells in lateral entorhinal cortex directly influence medial entorhinal cortex through synaptic connections in layer 1

  Vandrey, B. (Creator), Edinburgh DataShare, 12 Dec 2022

  DOI: 10.7488/ds/3787, https://www.biorxiv.org/content/10.1101/2022.08.25.505296v1

  Dataset

• MAPseq FASTQ sequences and barcode count matrix Tsoi et al., 2022

  Surmeli, G. (Creator) & Tsoi, S. Y. (Creator), Edinburgh DataShare, 18 Mar 2022

  DOI: 10.7488/ds/3420, https://elifesciences.org/articles/73162

  Dataset

• Rapid Evolution of Colistin Resistance in a Bioreactor Model of Infection of Klebsiella pneumoniae

  Dorai-Schneiders, T. (Creator), Waclaw, B. (Creator), Jiménez-Castellanos, J. (Creator) & Meynert, A. (Creator), Edinburgh DataShare, 31 Jan 2023

  DOI: 10.7488/ds/3800, https://doi.org/10.1101/2022.10.03.510619

  Dataset

• Carboxy Terminus Heat shock Protein 70 interacting Protein reduces tau-associated degenerative changes 

  Spires-Jones, T. (Creator), Edinburgh DataShare, 4 Sept 2015

  DOI: 10.7488/ds/296

  Dataset

• Simplified biochemical model of synaptic plasticity, extended with Calcium-Induced Calcium Release

  Diamantopoulos, M. (Creator), Herpich, G. (Creator), Xie, Y. (Creator) & Stefan, M. (Creator), Edinburgh DataShare, 6 Aug 2018

  DOI: 10.7488/ds/2404

  Dataset

• An Investigation of Synaptic Dysfunction in Alzheimer’s Disease - Chapter 6 - Image J Macros

  Jackson, R. (Creator), Edinburgh DataShare, 5 Sept 2017

  DOI: 10.7488/ds/2131

  Dataset

• An Investigation of Synaptic Dysfunction in Alzheimer’s Disease - Chapter 5 - Matlab Scripts

  Jackson, R. (Creator), Edinburgh DataShare, 5 Sept 2017

  DOI: 10.7488/ds/2136

  Dataset

• An Investigation of Synaptic Dysfunction in Alzheimer’s Disease - Chapter 3 - Matlab Scripts

  Jackson, R. (Creator), Edinburgh DataShare, 5 Sept 2017

  DOI: 10.7488/ds/2134

  Dataset

• Computational modelling and simulation of the interaction between NMDA receptors and CaMKII in the postsynaptic neuron

  Stefan, M. (Creator) & Roman Garcia, S. (Creator), Edinburgh DataShare, 7 Jun 2017

  DOI: 10.7488/ds/2058

  Dataset

• Data from: Automated single particle detection and tracking for large microscopy datasets

  Wilson, R. S. (Creator), Yang, L. (Creator), Dun, A. (Creator), Smyth, A. M. (Creator), Duncan, R. R. (Creator), Rickman, C. (Creator) & Lu, W. (Creator), Dryad, 22 Apr 2016

  DOI: 10.5061/dryad.6kg29, https://datadryad.org/stash/dataset/doi:10.5061/dryad.6kg29

  Dataset

• Single photon kilohertz frame rate imaging of neural activity

  Tian, T. (Creator), Yuan, Y. (Creator), Mitra, S. (Creator), Nolan, M. (Creator) & Gyongy, I. (Creator), Edinburgh DataShare, 19 Aug 2022

  DOI: 10.7488/ds/3504, https://www.biorxiv.org/content/10.1101/2022.05.23.493031v1

  Dataset

• Methods to quantify and visualize venules using structural magnetic resonance imaging scans

  Jochems, A. (Creator), Blair, G. (Creator), Stringer, M. (Creator), Thrippleton, M. (Creator), Clancy, U. (Creator), Chappell, F. (Creator), Brown, R. (Creator), Jaime García, D. (Creator), Hamilton, O. (Creator), Morgan, A. (Creator), Marshall, I. (Creator), Hetherington, K. (Creator), Wiseman, S. (Creator), MacGillivray, T. (Creator), Valdes Hernandez, M. (Creator), Doubal, F. (Creator) & Wardlaw, J. (Creator), Edinburgh DataShare, 21 Jan 2020

  DOI: 10.7488/ds/2755

  Dataset

• aNMJ-morph macro

  Minty, G. (Creator), Hoppen, A. (Creator), Boehm, I. (Creator), Alhindi, A. (Creator), Gibb, L. (Creator), Potter, E. (Creator), Wagner, B. (Creator), Miller, J. (Creator), Skipworth, R. (Creator), Gillingwater, T. (Creator) & Jones, R. (Creator), Edinburgh DataShare, 30 Sept 2019

  DOI: 10.7488/ds/2625

  Dataset

• Epilepsy-related mortality during the COVID-19 pandemic: a nationwide study of routine Scottish data

  Mbizvo, G. (Creator), Schnier, C. (Creator), Ramsay, J. (Creator), Duncan, S. (Creator) & Chin, R. (Creator), Edinburgh DataShare, 28 Jan 2022

  DOI: 10.7488/ds/2949

  Dataset

• Data from Paper: Synaptic oligomeric tau in Alzheimer's disease - a potential culprit in the spread of tau pathology through the brain

  Spires-Jones, T. (Creator), Colom Cadena, M. (Creator) & Davies, C. (Creator), Edinburgh DataShare, 12 Apr 2023

  DOI: 10.7488/ds/3837

  Dataset

• Data from: Presynaptic GABAB receptors functionally uncouple somatostatin interneurons from the active hippocampal network

  Booker, S. (Creator), Harada, H. (Creator), Elguate, C. (Creator), Bank, J. (Creator), Marlene, B. (Creator), Kulik, A. (Creator) & Vida, I. (Creator), Dryad, 19 Feb 2019

  DOI: 10.5061/dryad.gt160v2, https://datadryad.org/stash/dataset/doi:10.5061/dryad.gt160v2

  Dataset

• Spatial representation by ramping activity of neurons in the retrohippocampal cortex

  Clark, H. (Creator), Nolan, M. (Creator), Tam, T. (Creator), Hua, J. (Creator) & Tennant, S. (Creator), Edinburgh DataShare, 30 Aug 2022

  DOI: 10.7488/ds/3515, https://www.biorxiv.org/content/10.1101/2021.03.15.435518v3

  Dataset

• Stratified tissue biofabrication by rotational internal flow layer engineering

  Holland, I. (Creator), Edinburgh DataShare, 20 Jun 2023

  DOI: 10.7488/ds/7475

  Dataset

• Multi-method genome and epigenome wide studies of inflammatory protein levels in healthy older adults - OSCA EWAS Proteins

  Harris, S. (Creator), Patxot, M. (Creator), Ojavee, S. E. (Creator), Zhang, Q. (Creator), Liewald, D. (Creator), Ritchie, C. (Creator), Evans, K. (Creator), Tucker-Drob, E. M. (Creator), Wray, N. (Creator), McRae, A. (Creator), Visscher, P. (Creator), Deary, I. (Creator), Robinson, M. (Creator), Marioni, R. (Creator), Stevenson, A. (Creator), Hillary, R. (Creator), Trejo baños, D. (Creator), Kousathanas, A. (Creator) & Mccartney, D. (Creator), Edinburgh DataShare, 16 Jul 2020

  DOI: 10.7488/ds/2817

  Dataset

• Multi-method genome and epigenome wide studies of inflammatory protein levels in healthy older adults - BayesR+ GWAS Proteins

  Ojavee, S. E. (Creator), Zhang, Q. (Creator), Liewald, D. (Creator), Evans, K. (Creator), Tucker-Drob, E. (Creator), Wray, N. (Creator), McRae, A. (Creator), Visscher, P. (Creator), Deary, I. (Creator), Robinson, M. (Creator), Marioni, R. (Creator), Ritchie, C. (Creator), Hillary, R. (Creator), Trejo baños, D. (Creator), Kousathanas, A. (Creator), Mccartney, D. (Creator), Harris, S. (Creator), Stevenson, A. (Creator) & Patxot, M. (Creator), Edinburgh DataShare, 16 Jul 2020

  DOI: 10.7488/ds/2854

  Dataset

• Figures 2/3 Gordon et al (2016) A fine balance of synaptophysin levels underlies efficient retrieval of synaptobrevin II to synaptic vesicles (PLOS ONE)

  Cousin, M. (Creator) & Harper, C. (Creator), Edinburgh DataShare, 15 Jan 2016

  DOI: 10.7488/ds/1311

  Dataset

• Figure 1 Gordon et al (2016) A fine balance of synaptophysin levels underlies efficient retrieval of synaptobrevin II to synaptic vesicles (PLOS ONE)

  Cousin, M. (Creator) & Smillie, K. (Creator), Edinburgh DataShare, 15 Jan 2016

  DOI: 10.7488/ds/1310

  Dataset

• Images for "Functional Transport of Organic Anions and Cations in the Murine Mesonephros"

  Lawrence, L. (Creator), Smith, J. (Creator) & Davies, J. (Creator), Edinburgh DataShare, 12 Jul 2018

  DOI: 10.7488/ds/2377

  Dataset

• Lineage tracing in the adult mouse corneal epithelium supports the limbal epithelial stem cell hypothesis with intermittent periods of stem cell quiescence

  West, J. (Creator) & Dorà, N. J. (Creator), Edinburgh DataShare, 11 Feb 2016

  DOI: 10.7488/ds/1341

  Dataset

• Data for Comparison of two lines of tauGFP transgenic mice designed for lineage tracing

  Sharp, L. (Creator), Pratt, T. (Creator), MacKay, G. E. (Creator), Keighren, M. (Creator), Flockhart, J. H. (Creator), Chandler, E. (Creator), Price, D. (Creator), Mason, J. (Creator) & West, J. (Creator), Edinburgh DataShare, 30 May 2017

  DOI: 10.7488/ds/2049

  Dataset

• Comparative profiling of the synaptic proteome from Alzheimer’s disease patients with focus on the APOE genotype - proteomics dataset

  Spires-Jones, T. (Creator) & Wishart, T. (Creator), PRIDE database hosted by European Bioinformatics Institute, EBI, May 2020

  https://www.ebi.ac.uk/pride/archive/projects/PXD013753

  Dataset

• Data supporting Cachat et al. (2017): "Synthetic self-patterning and morphogenesis in mammalian cells: a proof-of-concept step towards synthetic tissue development"

  Cachat, E. (Creator) & Davies, J. (Creator), Edinburgh DataShare, 8 Jun 2017

  DOI: 10.7488/ds/2060

  Dataset

• Non-fibrillar oligomeric amyloid-β within synapses: Data set from publication Pickett et al 2016 J Alz Dis

  Pickett, E. (Creator), Koffie, R. M. (Creator), Wegmann, S. (Creator), Henstridge, C. (Creator), Herrmann, A. (Creator), Colom-Cadena, M. (Creator), Lleo, A. (Creator), Kay, K. R. (Creator), Vaught, M. (Creator), Soberman, R. (Creator), Walsh, D. M. (Creator), Hyman, B. T. (Creator) & Spires-Jones, T. (Creator), Edinburgh DataShare, 3 Jun 2016

  DOI: 10.7488/ds/1415

  Dataset

• Birth weight associations with DNA methylation differences in an adult population

  Morris, S. W. (Creator), Campbell, A. (Creator), Porteous, D. (Creator), Deary, I. (Creator), Evans, K. (Creator), Hafferty, J. (Creator), McIntosh, A. (Creator), Marioni, R. (Creator), Madden, R. (Creator), Mccartney, D. (Creator), Hillary, R. (Creator), Bermingham, M. (Creator) & Rawlik, K. (Creator), Edinburgh DataShare, 20 Oct 2020

  DOI: 10.7488/ds/2876

  Dataset

• BayesR+ EWAS - Genome and epigenome wide studies of plasma protein biomarkers for Alzheimer's disease implicate TBCA and TREM2 in disease risk

  Hillary, R. (Creator), Gadd, D. (Creator), McIntosh, A. (Creator), Robinson, M. (Creator), Nevado-Holgado, A. (Creator), Hayward, C. (Creator), Porteous, D. (Creator), Lovestone, S. (Creator), Mccartney, D. (Creator), Shi, L. (Creator), Campbell, A. (Creator), Walker, R. (Creator), Ritchie, C. (Creator), Deary, I. (Creator) & Evans, K. (Creator), Edinburgh DataShare, 29 Nov 2021

  DOI: 10.7488/ds/3194, https://doi.org/10.1101/2021.06.07.21258457

  Dataset

• Generation Scotland Age x Sex Epigenome Wide Association Study Summary Statistics

  Boutin, T. (Creator), Morris, S. (Creator), Campbell, A. (Creator), Murray, A. (Creator), Whalley, H. (Creator), Hayward, C. (Creator), Evans, K. (Creator), Chandra, T. (Creator), Deary, I. (Creator), McIntosh, A. (Creator), Yang, J. (Creator), Visscher, P. (Creator), McRae, A. (Creator), Marioni, R. (Creator), Porteous, D. (Creator), McCartney, D. (Creator), Zhang, F. (Creator), Hillary, R. (Creator), Zhang, Q. (Creator), Stevenson, A. (Creator), Walker, R. (Creator) & Bermingham, M. (Creator), Edinburgh DataShare, 31 Jan 2020

  DOI: 10.7488/ds/2709

  Dataset

• Data supporting Martin et al (2017) "Symmetry-breaking in branching epithelia..."

  Martin, K. (Creator) & Davies, J. (Creator), Edinburgh DataShare, 24 Jan 2017

  DOI: 10.7488/ds/1701

  Dataset