Institute for Adaptive and Neural Computation

Research output

Research output per year 1969 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 2024 2024

• 899 Article
• 614 Conference contribution
• 139 Poster
• 50 Chapter
• 206 More
  • 37 Abstract
  • 37 Paper
  • 23 Meeting abstract
  • 22 Chapter (peer-reviewed)
  • 19 Working paper
  • 15 Preprint
  • 13 Book
  • 11 Entry for encyclopedia/dictionary
  • 5 Other report
  • 5 Review article
  • 3 Commissioned report
  • 3 Comment/debate
  • 3 Other contribution
  • 2 Editorial
  • 2 Doctoral Thesis
  • 1 Anthology
  • 1 Foreword/postscript
  • 1 Book/Film/Article review
  • 1 Letter
  • 1 Web publication/site
  • 1 Patent

Research output per year

Research output per year

Search results

• 2024

  Expected flow networks in stochastic environments and two-player zero-sum games

  Jiralerspong, M., Sun, B., Vucetic, D., Zhang, T., Bengio, Y., Gidel, G. & Malkin, N., 10 May 2024, p. 1-21. 21 p.

  Research output: Contribution to conference › Poster › peer-review

  Open Access

  • Sampling Model 100%

• Dam: Towards a foundation model for time series forecasting

  Darlow, L., Deng, Q., Hassan, A., Asenov, M., Singh, R., Joosen, A., Barker, A. & Storkey, A., 9 May 2024.

  Research output: Contribution to conference › Poster › peer-review

  Open Access

  • Continuous Function 100%
  • Time Series 100%
  • Time Series Forecasting 100%
  • Phase Composition 100%
  • Long-Term Forecasting 66%

• Delta-AI: Local objectives for amortized inference in sparse graphical models

  Falet, J-P., Lee, H. B., Malkin, N., Sun, C., Secrieru, D., Zhang, D., Lajoie, G. & Bengio, Y., 9 May 2024, p. 1-21. 21 p.

  Research output: Contribution to conference › Poster › peer-review

  Open Access

  • Artificial Intelligence 100%
  • Graphical Model 100%
  • Conditional Distribution 50%
  • Marginal Distribution 16%
  • Training Policy 16%

• Amortizing intractable inference in large language models

  Hu, E. J., Jain, M., Elmoznino, E., Kaddar, Y., Lajoie, G., Bengio, Y. & Malkin, N., 8 May 2024, p. 1-31. 31 p.

  Research output: Contribution to conference › Poster › peer-review

  Open Access

  • Tool Use 100%
  • Latent Variable Modeling 100%
  • Learning Algorithm 100%
  • Large Language Model 100%
  • Reinforcement Learning 100%

• PhyloGFN: Phylogenetic inference with generative flow networks

  Zhou, M., Yan, Z., Layne, E., Malkin, N., Zhang, D., Jain, M., Blanchette, M. & Bengio, Y., 7 May 2024, p. 1-34. 34 p.

  Research output: Contribution to conference › Poster › peer-review

  Open Access

  • Cladistics 100%
  • Phylogeny 100%
  • Evolution 75%
  • Phylogenetic Tree 25%
• 2023

  BatchGFN: Generative flow networks for batch active learning

  Malik, S. A., Lahlou, S., Jesson, A., Jain, M., Malkin, N., Deleu, T., Bengio, Y. & Gal, Y., 28 Jul 2023, p. 1-10. 10 p.

  Research output: Contribution to conference › Poster › peer-review

  Open Access

• Thompson sampling for improved exploration in GFlowNets

  Rector-Brooks, J., Madan, K., Jain, M., Korablyov, M., Liu, C-H., Chandar, S., Malkin, N. & Bengio, Y., 28 Jul 2023, p. 1-8. 8 p.

  Research output: Contribution to conference › Poster › peer-review

  Open Access

  • Target Distribution 100%
  • Decision Making 100%
  • Fast Convergence 50%
  • Sequential Decision Making 50%
  • Posterior Distribution 50%

• GFlowNets and variational inference

  Malkin, N., Lahlou, S., Deleu, T., Ji, X., Hu, E., Everett, K., Zhang, D. & Bengio, Y., 5 May 2023, p. 1-24. 24 p.

  Research output: Contribution to conference › Poster › peer-review

  Open Access

  • Importance Sampling 100%
  • Hierarchical Algorithm 100%
  • Training Policy 100%
  • Continuous Space 100%
  • Target Distribution 100%

• Ctrl-TNDM: Decoding feedback-driven movement corrections from motor cortex neurons

  Kudryashova, N., Perich, M. G., Miller, L. E. & Hennig, M. H., 10 Mar 2023. 1 p.

  Research output: Contribution to conference › Poster › peer-review

  File

  • Modeling 100%
  • Models 100%
  • Movement (Physiology) 100%
  • Feedback System 100%
  • Behavior (Neuroscience) 100%
• 2020

  Parametric Copula-GP model reveals tuning of neuronal and behavioral relationships to visual stimuli

  Kudryashova, N., Amvrosiadis, T., Dupuy, N., Rochefort, N. & Onken, A., 1 Mar 2020. 1 p.

  Research output: Contribution to conference › Poster › peer-review

  • Gaussian Process 100%
  • Visual Stimulus 100%
  • Process Model 100%
  • Dependent Personality Disorder 100%
  • Models 66%
• 2019

  Scalable Extreme Deconvolution

  Ritchie, J. & Murray, I., 14 Dec 2019. 7 p.

  Research output: Contribution to conference › Poster › peer-review

  Open Access

  File

  • Deconvolution 100%
  • Data Set 100%
  • Fitting 50%
  • Observation 50%
  • Large Data Set 50%

• Parametric copula models reveal neuronal and behavioral time-dependent relationships in primary visual cortex

  Kudryashova, N., Amvrosiadis, T., Dupuy, N., Rochefort, N. & Onken, A., 19 Sept 2019. 1 p.

  Research output: Contribution to conference › Poster › peer-review

  Open Access

  • Primary Visual Cortex 100%
  • Models 100%
  • Visual Cortex 100%
  • Copula 100%
  • Dependent Personality Disorder 50%

• Learning analytics adoption – approaches and maturity

  Tsai, Y-S., Kovanović, V. & Gasevic, D., 3 Jan 2019, (Accepted/In press). 2 p.

  Research output: Contribution to conference › Poster › peer-review

  Open Access

  File

  • Learning Analytics 100%
  • Higher Education 66%
  • Analysis Technique 33%
  • Networks 33%
• 2018

  Deep multimodal autoencoders for identifying latent representations of spike counts and local field potentials

  Onken, A., Yague, J. & Sakata, S., 27 Sept 2018.

  Research output: Contribution to conference › Poster › peer-review

  Open Access

  • Representation 100%
  • Autoencoder 100%
  • Local Field Potential 100%
  • Basal Forebrain 80%
  • Auditory Cortex 80%
• 2017

  Community detection identifies a subnetwork of the synaptic proteome associated with differences in educational attainment

  Robertson, G., McLean, C., Sorokina, O., C, D., Wysocka, E., Heil, K., Hill, W. D., Simpson, T., Armstrong, J. D. & Deary, I., 22 Mar 2017.

  Research output: Contribution to conference › Poster › peer-review

  • Proteome 100%
  • Mental Capacity 100%
  • Protein 80%
  • Ape 40%
  • Association 40%
• 2016

  Robust statistical modeling greatly improves sensitivity of high-throughput RNA structure probing experiments

  Selega, A., Sirocchi, C., Iosub, I., Granneman, S. & Sanguinetti, G., 5 Dec 2016.

  Research output: Contribution to conference › Poster › peer-review

  • RNA 100%
  • RNA Structure 100%
  • High Throughput Sequencing 37%
  • Protein Secondary Structure 37%
  • Transcriptome 37%

• Bioluminescence-based approach to monitor neural activity in freely moving Drosophilalarvae

  Marescotti, M., Lagogiannis, K., Davies, W., Webb, B. & Armstrong, J. D., Oct 2016. 1 p.

  Research output: Contribution to conference › Poster › peer-review

  Open Access

  File

• Synaptic Protein-Protein Interaction Networks unravel insights into Parkinson's Disease

  Heil, K., Sorokina, O. & Armstrong, J. D., 16 Sept 2016.

  Research output: Contribution to conference › Poster

  • Introspection 100%
  • Protein-Protein Interaction Networks 100%
  • Protein-Protein Interaction 100%
  • Parkinson's Disease 100%
  • Protein 66%

• Separation of mixed source RNA-Seq reads by comparative genomic processing

  Heron, S., Dando, O., Hardingham, G. & Simpson, T. I., 12 Sept 2016.

  Research output: Contribution to conference › Poster

  • Comparative Genomics 100%
  • RNA Sequencing 100%
  • Species 100%
  • Processing 100%
  • RNA 100%

• Bioluminescence-based approach to monitor neural activity in freely moving Drosophilalarvae

  Marescotti, M., Lagogiannis, K., Davies, W., Webb, B. & Armstrong, J. D., Sept 2016. 1 p.

  Research output: Contribution to conference › Poster › peer-review

  Open Access

  File

• Robust statistical modeling greatly improves sensitivity of high-throughput RNA structure probing experiments

  Selega, A., Sirocchi, C., Iosub, I., Granneman, S. & Sanguinetti, G., 8 Jul 2016.

  Research output: Contribution to conference › Poster › peer-review

  • RNA Structure 100%
  • Transcriptome 75%
  • RNA 50%
  • Pipeline 50%
  • Structure 50%

• Resource-Efficient Feature Gathering at Test Time

  Gray, G. & Storkey, A., 2016.

  Research output: Contribution to conference › Poster › peer-review

  • Machine Learning 100%
  • Models 100%
  • Allocation 100%
  • Gradient Method 50%
  • Real World 50%
• 2015

  Multi-species integration of miRNA binding site data to improve target prediction accuracy for synaptic miRNAs

  Heron, S. & Simpson, T. I., 23 Jul 2015.

  Research output: Contribution to conference › Poster

  • Binding Site 100%
  • Species 100%
  • Accuracy 100%
  • MicroRNA 100%
  • RNA Binding 100%

• A rule-based model of Clathrin Mediated Endocytosis: Gaining a better understanding of Parkinson's Disease

  Heil, K., Sorokina, O., Hellgren-kotaleski, J. & Armstrong, J. D., 5 Jul 2015.

  Research output: Contribution to conference › Poster › peer-review

  • Comprehension 100%
  • Endocytosis 100%
  • Protein 100%
  • Clathrin 100%
  • Introspection 25%
• 2014

  A systems biological approach to Parkinson's disease

  Heil, K. F., Sorokina, O. & Armstrong, J. D., Nov 2014.

  Research output: Contribution to conference › Poster › peer-review

  • Protein 100%
  • Parkinson's Disease 100%
  • Nested Gene 40%
  • Prevalence 40%
  • Community Structure 40%

• Understanding synaptic pathways - modelling Parkinson's Disease

  Heil, K. F., Sorokina, O., Hellgren-kotaleski, J. & Armstrong, JD., 18 Jun 2014.

  Research output: Contribution to conference › Poster › peer-review

• A model relating temporal processing across spatial and temporal scales using electrophysiological and optical imaging data in primate V1

  Stevens, J-L., Chemla, S., Benvenuti, G., Chavane, F. & Bednar, J., 2014.

  Research output: Contribution to conference › Poster › peer-review

• A Systems Biological Approach to Parkinson's Disease

  Heil, K., Sorokina, O. & Armstrong, D., 2014.

  Research output: Contribution to conference › Poster › peer-review

  • Parkinson's Disease 100%
  • Protein 85%
  • Signal Transduction 28%
  • Nested Gene 28%
  • Prevalence 28%

• Coding and decoding from neural populations representing multiple stimuli

  Keemink, S. & Van Rossum, M., 2014.

  Research output: Contribution to conference › Poster › peer-review

  • Stimulus 100%
  • Decoder 53%
  • Biases 46%
  • Neurons 38%
  • Neuron 38%

• Higher rates of anxiety found in self-reported grapheme-colour synaesthetes

  Carmichael, D. A., Shillcock, R. & Simner, J., 2014.

  Research output: Contribution to conference › Poster › peer-review

• Identifying Spatially Correlated Changes in methylation Profiles Using Kernel Methods

  Mayo, T., Schweikert, G. & Sanguinetti, G., 2014.

  Research output: Contribution to conference › Poster › peer-review

  • Kernel Method 100%
  • Methylation 100%
  • Parametric Test 40%
  • Deoxyribonucleic Acid 40%
  • Condition Coverage 20%

• Identifying Spatially Correlated Changes in Methylation Profiles Using Kernel Methods

  Mayo, T., Sanguinetti, G. & Schweikert, G., 2014.

  Research output: Contribution to conference › Poster › peer-review

  • Kernel Method 100%
  • Methylation 100%
  • Parametric Test 40%
  • Deoxyribonucleic Acid 40%
  • Condition Coverage 20%

• Relating the diversity of interneuronal subtypes to their functional roles in development, homeostasis and sensory processing

  Rudiger, P. & Bednar, J., 2014.

  Research output: Contribution to conference › Poster › peer-review

• Relationship between natural image statistics and lateral connectivity in the primary visual cortex

  Rudiger, P., Stevens, J-L., Talluri, B. & Bednar, J. A., 2014, p. 148-149. 1 p.

  Research output: Contribution to conference › Poster › peer-review

  • Visual Cortex 100%
  • Neurosciences 71%
  • Axon 14%
  • Selectivity 14%
  • Striate Cortex 14%

• Saliency detection without biasing stimulus estimation

  Keemink, S. & Van Rossum, M., 2014.

  Research output: Contribution to conference › Poster › peer-review

  • Saliency Detection 100%
  • Neurons 75%
  • Neuron 75%
  • Preferred Orientation 50%
  • Models 50%
• 2013

  Different binocular foveal strategies in reading: younger and older readers

  Paul, S. A., Obregón, M. & Shillcock, R., 1 Aug 2013.

  Research output: Contribution to conference › Poster › peer-review

• Left eye and right eye in reading left-to-right and right-to-left orthographies

  Obregón, M., Kreiner, H. & Shillcock, R., 1 Aug 2013.

  Research output: Contribution to conference › Poster › peer-review

• Probabilistic inference of synaptic dynamics in neocortical microcircuits

  Costa, R. P., Sjöström, P. J. & Van Rossum, M., Jul 2013.

  Research output: Contribution to conference › Poster › peer-review

  • Synaptic Plasticity 100%
  • Pyramidal Cell 66%
  • Information Processing 16%
  • Neural System 16%
  • Brain Areas 16%

• Complexity and specificity of experimentally induced expectations in motion perception

  Gekas, N., Chalk, M., Seitz, A. R. & Seriès, P., 1 Jan 2013, p. 355. 1 p.

  Research output: Contribution to conference › Poster › peer-review

  Open Access

• Modelling homeostatic control of high-frequency post-synaptic transmission and its effect on metabolic efficiency in the auditory brainstem

  Sweeney, Y., Hellgren-kotaleski, J. & Hennig, M., 1 Jan 2013, p. P167.

  Research output: Contribution to conference › Poster › peer-review

  • Neurotransmission 100%
  • Brainstem 100%
  • Nitric Oxide 100%
  • Neuron 100%
  • Action Potential 60%

• A model of hippocampal cell assembly dynamics based on single-cell theta phase precession

  Chadwick, A., Nolan, M. & van Rossum, M. C. W., 2013.

  Research output: Contribution to conference › Poster › peer-review

  • Local Field Potential 100%
  • Cognition 100%
  • Behavior (Neuroscience) 100%
  • Cell Function 100%
  • Place Cell 100%

• A model of mechanotransduction in Drosophila non-ciliated, primary endings

  Suslak, T., Bewick, G., Armstrong, D. & Jarman, A., 2013.

  Research output: Contribution to conference › Poster › peer-review

  • Mechanotransduction 100%
  • Drosophila 100%
  • Neuron 100%
  • Ion Channel 50%
  • Receptor Potential 50%

• A model of mechanotransduction in Drosophila non-ciliated, primary endings

  Suslak, T., McKay-Fletcher, J. A., Bewick, G., Armstrong, D. & Jarman, A., 2013.

  Research output: Contribution to conference › Poster

  • Mechanotransduction 100%
  • Drosophila 100%
  • Neuron 100%
  • Ion Channel 50%
  • Receptor Potential 50%

• An automated simulator-independent workflow for reproducible simulation and analysis using Lancet and IPython Notebook

  Stevens, J-L., Elver, M. & Bednar, J., 2013. 2 p.

  Research output: Contribution to conference › Poster

  Open Access

• Co-existence of theta-nested gamma oscillations and grid firing fields in an attractor network model

  Solanka, L., Pastoll, H., Nolan, M. & Van Rossum, M. C. W., 2013.

  Research output: Contribution to conference › Poster › peer-review

  • Stellate Cell 100%
  • Interneuron 80%
  • Entorhinal Cortex 60%
  • Neuron 40%
  • Brain Areas 20%

• Contextual interactions and association fields in a V1 network encoding a Bayesian posterior

  Keemink, S., Boucsein, C. & van Rossum, M. C. W., 2013.

  Research output: Contribution to conference › Poster › peer-review

• Detecting and Quantifying Topographic Order in the Brain

  Yarrow, S., Razak, K., Seitz, A. R. & Series, P., 2013.

  Research output: Contribution to conference › Poster › peer-review

  • Order 100%
  • Map 100%
  • Brain 100%
  • Selectivity 30%
  • Correlation 23%

• Developing orientation maps using realistic patterns of lateral connectivity

  Rudiger, P., Law, J., Antolik, J. & Bednar, J., 2013.

  Research output: Contribution to conference › Poster › peer-review

  • Contrast 100%
  • Visual Cortex 57%
  • Self Concept 42%
  • Development 42%
  • Neuron 42%

• Impact of orientation specific surround modulation and tuning curve shape on population coding and tilt illusion in V1

  Keemink, S., Boucsein, C. & van Rossum, M. C. W., 2013.

  Research output: Contribution to conference › Poster › peer-review

  • Tuning Curve 100%
  • Modulation 100%
  • Coding 100%
  • Orientation 100%
  • Illusion 100%

• Integrative properties of motor cortex pyramidal cells during quiet wakefulness and movement

  Puggioni, P., Pelko, M., Van Rossum, M. & Duguid, I., 2013, p. 190.

  Research output: Contribution to conference › Poster › peer-review

  • Pyramidal Cell 100%
  • Motor Cortex 100%
  • Wakefulness 100%
  • Neuron 100%
  • Behavior (Neuroscience) 42%