Research output per year
Research output per year
- 1 - 50 out of 66 results
Search results
-
2025
Review: Estimates of livestock genetic diversity in the UK
Rochus, C., Price, C. & Pocrnic, I., 17 May 2025, (E-pub ahead of print) bioRxiv, p. 1-38, 38 p.Research output: Working paper › Preprint
File -
High quality genome assemblies of African cattle breeds using PacBio HiFi sequencing
Houaga, I., Bhati, M., Nziku, Z., Nguluma, A., Mapholi, N., Nesengani, L. T., Ogugo, M., Sagbo, D. C. Y., Zorobouragui, L., Boco, M. B. Y., Djikeng, A., Prendergast, J., Gorjanc, G. & Becher, H., 22 Apr 2025, (E-pub ahead of print) bioRxiv, p. 1-11, 11 p.Research output: Working paper › Preprint
File -
Dynamic transcriptional heterogeneity in pituitary corticotrophs
Yuan, Z., Laiho, L., Smith, E., McDougall, C., Duncan, P. J., Tissier, P. L., Shipston, M. J. & Romanò, N., 5 Apr 2025, bioRxiv.Research output: Working paper › Preprint
-
Accessible, realistic genome simulation with selection using stdpopsim
Gower, G., Pope, N. S., Rodrigues, M. F., Tittes, S., Tran, L. N., Alam, O., Cavassim, M. I. A., Fields, P. D., Haller, B. C., Huang, X., Jeffrey, B., Korfmann, K., Kyriazis, C. C., Min, J., Rebollo, I., Rehmann, C. T., Small, S. T., Smith, C. C. R., Tsambos, G. & Wong, Y. & 11 others, , 23 Mar 2025, (E-pub ahead of print) bioRxiv, p. 1-27, 27 p. (bioRxiv : the preprint server for biology).Research output: Working paper › Preprint
Open AccessFile -
Spatial modelling improves genomic evaluation in Tanzanian smallholder admixed dairy cattle
houaga, I., Mrode, R., Ojango, J., Ekine-Dzivenu, C. C., Mwai, O., Nziku, Z., Nguluma, A., Lavrencic, E., Lindgren, F., Pocrnic, I., Djikeng, A. & Gorjanc, G., 7 Mar 2025, (E-pub ahead of print) USA: bioRxiv, p. 1-29, 29 p.Research output: Working paper › Preprint
Open AccessFile -
On ARGs, pedigrees, and genetic relatedness matrices
Lehmann, B., Lee, H., Anderson-Trocmé, L., Kelleher, J., Gorjanc, G. & Ralph, P. L., 5 Mar 2025, (E-pub ahead of print) bioRxiv, p. 1-38, 38 p. (bioRxiv : the preprint server for biology).Research output: Working paper › Preprint
Open AccessFile -
The Relationship Between Food Insecurity and Mental Health Among Syrians and Syrian Refugees During COVID-19
Calia, C., El Gayar, A., Zuntz, A.-C., Abdullateef, S., Almashhor, E., Grant, L. & Boden, L., 29 Jan 2025, Preprints.org, p. 1-25, 25 p.Research output: Working paper › Preprint
Open AccessFile -
Evaluating genotyping strategies for a small managed population with simulation
Martin, A., Schoenebeck, J., Clements, D., Lewis, T., Wiener, P. & Gorjanc, G., 25 Jan 2025, bioRxiv, p. 1-24, 24 p.Research output: Working paper › Preprint
Open AccessFile -
Adiponectin exerts sex-dependent effects on lipid, amino acid, and glucose metabolism during caloric restriction
Ikushima, Y. M., Chen, K.-C., Sulston, R. J., Mattiucci, D., Brain, E. J., Fung Xin Zi, S. A., Suchacki, K. J., Thomas, B. J., Lovdel, A., Bennett, M., Kobayashi, H., Whitfield, P. D., Takubo, K., Baker, A. H., Morton, N. M., Semple, R. K. & Cawthorn, W. P., 22 Jan 2025, bioRxiv, (bioRxiv).Research output: Working paper › Preprint
-
Leveraging ancestral recombination graphs for quantitative genetic analysis of rice yield in indica and japonica subspecies
Rebollo, M. I., Tolhurst, D., Obsteter, J., Rosas, J. & Gorjanc, G., 20 Jan 2025, (E-pub ahead of print) bioRxiv, p. 1-27, 27 p.Research output: Working paper › Preprint
Open AccessFile -
Repopulation of the brain with microglia-like cells following intraperitoneal bone marrow cell transfer in microglia-deficient mice
Taylor, I., Patkar, O. L., Liu, Y., Jacquelin, S., Ranpura, G., Carter-Cusack, D., Ewing, A., Kurniawan, N. D., Li, M., Vasoya, D., He, X., Dando, O., Kind, P. C., Hardingham, G. E., Bradford, B., Mabbott, N., Lefevre, L., Pridans, C., Summers, K. & Irvine, K. M. & 1 others, , 17 Jan 2025, bioRxiv, p. 1-74, 74 p.Research output: Working paper › Preprint
Open AccessFile -
2024
An Automated and Portable Platform for Rapid Cell-Free DNA Isolation and Its Application in Microbial DNA Sequencing from Human Blood Samples
Marriott, L., Martinez-Lopez, A., Liga, A., Horiba, K., Warr, A., Phulusa, J. N., Kumar, R. S., Carey, L., Ito, Y., Parcell, B. J., Leslie, N. R., Feasey, N. A., Jacob, S. T., Rylance, J. & Kersaudy-Kerhoas, M., 31 Dec 2024, (E-pub ahead of print) medRxiv, p. 1-21, 21 p.Research output: Working paper › Preprint
Open AccessFile -
Breed-specific effects of inbreeding and artificial selection on susceptibility to equine exertional rhabdomyolysis
Lindsay-McGee, V., Clark, E., Piercy, R. J. & Psifidi, A., 25 Dec 2024, (E-pub ahead of print) Authorea, p. 1-21, 21 p.Research output: Working paper › Preprint
File -
Robust Optimal Contribution Selection
Fogg, J., Ortiz Cuadros, J., Pocrnic, I., Hall, J. A. J. & Gorjanc, G., 3 Dec 2024, (E-pub ahead of print) arXiv.org, p. 1-10, 10 p.Research output: Working paper › Preprint
Open AccessFile -
Therapeutic window for treatment of prion disease defined by timed depletion of Prion protein
Bradford, B., Marshall, A., Tuzi, N., Brown, D., Kisielewski, D., Summers, K., Perry, H., Piccardo, P., Clarke, A. & Manson, J. C., 18 Nov 2024, (E-pub ahead of print) bioRxiv.Research output: Working paper › Preprint
Open AccessFile -
HoloSimR: a comprehensive framework for simulating breeding programs including the hologenome scenario
Casto-Rebollo, C., Pocrnic, I., Gorjanc, G. & Ibáñez-Escriche, N., 8 Nov 2024, Research Square , p. 1-26, 26 p.Research output: Working paper › Preprint
Open AccessFile -
Early changes in the gut microbiome among HIV-infected Individuals in Uganda initiating daily TMP/SMX
Atugonza, C., Muwonge, A., Najjuka, C. F., Kateete, D. P., Katagirya, E., Mwesigwa, S. & Asiimwe, B., 7 Oct 2024, (E-pub ahead of print) medRxiv, p. 1-20, 20 p. (medrXiv).Research output: Working paper › Preprint
Open AccessFile -
Response strategies to acute and chronic environmental stress in the arctic breeding Lapland longspur (Calcarius lapponicus)
Wu, Z., Hindle, M., Bishop, V., Reid, A., Miedzinska, K., Pérez, J., Krause, J., Wingfield, J. C., Meddle, S. & Smith, J., 9 Sept 2024, Research Square .Research output: Working paper › Preprint
Open AccessFile -
Mosquitoes reared in distinct insectaries within an institution in close spatial proximity possess significantly divergent microbiomes
Brettell, L. E., Hoque, A. F., Joseph, T. S., Dhokiya, V., Hornett, E. A., Hughes, G. L. & Heinz, E., 29 Aug 2024, (E-pub ahead of print) bioRxiv, p. 1-29, 29 p. (bioRxiv : the preprint server for biology).Research output: Working paper › Preprint
Open AccessFile -
Investigative power of Genomic Informational Field Theory (GIFT) relative to GWAS for genotype-phenotype mapping
Kyratzi, P., Matika, O., Brassington, A. H., Connie, C. E., Xu, J., Barrett, D. A., Emes, R. D., Archibald, A. L., Paldi, A., Sinclair, K. D., Wattis, J. & Rauch, C., 13 Aug 2024, bioRxiv, p. 1-27, 27 p. (bioRxiv).Research output: Working paper › Preprint
Open AccessFile -
An emerging PB2-627 polymorphism increases the pandemic potential of avian influenza virus by breaking through ANP32 host restriction in mammalian and avian hosts
Guo, Y., Shu, S., Zhou, Y., Peng, W., Jiang, Z., Li, Y., Li, T., Du, F., Dong, J., Zhao, C., Wang, M. H., Sun, Y., Sun, H., Lu, L., Digard, P., Chang, K.-C., Wang, L., Chen, X., Liu, J. & Pu, J., 26 Jul 2024, (E-pub ahead of print) bioRxiv, p. 1-39, 39 p.Research output: Working paper › Preprint
Open AccessFile -
Deep Learning-based Modeling for Preclinical Drug Safety Assessment
Jaume, G., de Brot, S., Song, A. H., Williamson, D. F. K., Oldenburg, L., Zhang, A., Chen, R. J., Asin, J., Blatter, S., Dettwiler, M., Goepfert, C., Grau-Roma, L., Soto, S., Keller, S. M., Rottenberg, S., Del-Pozo, J., Pettit, R., Le, L. P. & Mahmood, F., 23 Jul 2024, bioRxiv, at Cold Spring Harbor Laboratory, p. 1-49, 49 p. (bioRxiv : the preprint server for biology).Research output: Working paper › Preprint
Open AccessFile -
Reviving the Desired Gains Index: An optimal solution for parent selection in public plant breeding programs
Werner, C. R., Gardner, K. A. & Tolhurst, D. J., 23 Jul 2024, bioRxiv, p. 1-23, 23 p.Research output: Working paper › Preprint
Open AccessFile -
Genomic insights into red squirrels in Scotland reveals loss of heterozygosity associated with extreme founder effects
Marr, M. M., Humble, E., Lurz, P., Wilson, L. A., Milne, E., Beckmann, K. M., Schoenebeck, J., Fung, U. Y. Y., Kitchener, A., Kortland, K., Edwards, C. & Ogden, R., 13 Jul 2024, bioRxiv, p. 1-44, 44 p.Research output: Working paper › Preprint
Open AccessFile -
The effect of a dominant kinase-dead Csf1r mutation associated with adult-onset leukoencephalopathy on brain development and neuropathology
Stables, J., Pal, R., Bradford, B., Carter-Cusack, D., Taylor, I., Pridans, C., Khan, N., Woodruff, T., Irvine, K., Summers, K. M., Mabbott, N. & Hume, D. A., 13 Jun 2024, bioRxiv, p. 1-55, 55 p.Research output: Working paper › Preprint
Open AccessFile -
The principles of expected and realised genetic relatedness among individual honeybees
Strachan, L., Bubnič, J., Petersen, G., Gorjanc, G. & Obsteter, J., 31 May 2024, bioRxiv.Research output: Working paper › Preprint
Open AccessFile -
Accurate determination of breed origin of alleles in a simulated smallholder crossbred dairy cattle population
Welderufael, B., houaga, I., Gaynor, C., Gorjanc, G. & Hickey, J., 15 Apr 2024, (E-pub ahead of print) bioRxiv.Research output: Working paper › Preprint
Open AccessFile -
Pulses of Class I PI3kinase activity identify the release and recapture of prey from neutrophil phagosomes
Muir, C., Reyes-Aldasoro, C. C., Ellett, F. E., Prajsnar, T. K., Ho, Y. X., Bernut, A., Loynes, C. A., Elworthy, S., Bowden, K. A., Cadbury, A. J., Prince, L. R., King, J. S., Condliffe, A. M. & Renshaw, S. A., 29 Feb 2024, p. 1-33, 33 p. (bioRxiv).Research output: Working paper › Preprint
Open AccessFile -
A framework for simulating genotype by environment interaction using multiplicative models
Bančič, J., Gorjanc, G. & Tolhurst, D., 29 Jan 2024, Research Square .Research output: Working paper › Preprint
Open AccessFile -
Unlocking genome-based prediction and selection in conifers: the key role of within-family prediction accuracy
Papin, V., Gorjanc, G., Pocrnic, I., Bouffier, L. & Sanchez, L., 29 Jan 2024, bioRxiv.Research output: Working paper › Preprint
Open AccessFile -
2023
Plant breeding simulations with AlphaSimR
Bančič, J., Greenspoon, P., Gaynor, C. R. & Gorjanc, G., 30 Dec 2023, bioRxiv.Research output: Working paper › Preprint
Open AccessFile -
Mitochondrial dysfunction and mitophagy blockade contribute to renal osteodystrophy in chronic kidney disease-mineral bone disorder
Hsu, S.-N., Stephen, L. A., Phadwal, K., Dillon, S., Carter, R., Morton, N. M., Luijten, I., Emelianova, K., Amin, A. K., Macrae, V. E., Freeman, T. C., Staines, K. A. & Farquharson, C., 26 Dec 2023, bioRxiv, p. 1-60, 60 p.Research output: Working paper › Preprint
Open AccessFile -
Predictive phage therapy for Escherichia coli urinary tract infections: cocktail selection for therapy based on machine learning models
Keith, M., Torriente, A. P. D. L., Chalka, A., Vallejo-Trujillo, A., McAteer, S. P., Paterson, G. K., Low, A. S. & Gally, D. L., 23 Nov 2023, bioRxiv, p. 1-21, 21 p.Research output: Working paper › Preprint
Open AccessFile -
Accounting for nuclear and mito genome in dairy cattle breeding - a simulation study
Mafra Fortuna, G., Zumbach, B., Johnsson, M., Pocrnic, I. & Gorjanc, G., 21 Nov 2023, bioRxiv, p. 1, 8 p.Research output: Working paper › Preprint
Open AccessFile -
Mapping Rangeland Health Indicators in East Africa from 2000 to 2022
Soto, G. E., Wilcox, S., Clark, P. E., Fava, F. P., Jensen, N. D., Kahiu, N., Liao, C., Porter, B., Sun, Y. & Barrett, C., 20 Nov 2023, (E-pub ahead of print) Earth System Science Data.Research output: Working paper › Preprint
Open AccessFile -
Characteristics and Variability of Porcine Reproductive and Respiratory Syndrome Virus Strains: Implications for Virulence and Control - A Scoping Review
Martinez, N., Machado, G., Golding, M., Deza-Cruz, I. & Prada, J. M., 23 Aug 2023, (E-pub ahead of print) Research Square , p. 1-20, 20 p.Research output: Working paper › Preprint
Open AccessFile -
Structural variants and short tandem repeats impact gene expression and splicing in bovine testis tissue
Bhati, M., Mapel, X. M., Lloret-Villas, A. & Pausch, H., 7 Jun 2023, bioRxiv, at Cold Spring Harbor Laboratory.Research output: Working paper › Preprint
Open AccessFile -
Fetally-encoded GDF15 and maternal GDF15 sensitivity are major determinants of nausea and vomiting in human pregnancy
Fejzo, M., Rocha, N., Cimino, I., Lockhart, S. M., Petry, C., Kay, R. G., Burling, K., Barker, P., George, A. L., Yasara, N., Premawardhena, A., Gong, S., Cook, E., Rainbow, K., Withers, D. J., Cortessis, V., Mullin, P. M., MacGibbon, K. W., Jin, E. & Kam, A. & 22 others, , 4 Jun 2023, bioRxiv.Research output: Working paper › Preprint
Open Access -
Open Institute of the African BioGenome Project: Bridging the gap in African biodiversity genomics and bioinformatics
Sharaf, A., Ndiribe, C. C., Omotoriogun, T. C., Abueg, L., Badaou, B., Markey, F. J. B., Beedessee, G., Diouf, D., Duru, V. C., Ebuzome, C., Eziuzo, S. C., Jaufeerally Fakim, Y., Formenti, G., Ghanm, N., Guerfali, F. Z., Houaga, I., Ideozu, J. E., Katee, S. M., Khayi, S. & Kuja, J. O. & 15 others, , 30 May 2023, (E-pub ahead of print) OSF Preprints, p. 1-18, 18 p.Research output: Working paper › Preprint
Open AccessFile -
Cellular heterogeneity of the developing worker honey bee (Apis mellifera) pupa: a single cell transcriptomics analysis
Patir, A., Raper, A., Fleming, R., Henderson, B. E., Murphy, L., Henderson, N. C., Clark, E., Freeman, T. C. & Barnett, M. W., 24 Mar 2023, bioRxiv.Research output: Working paper › Preprint
Open AccessFile -
Development of a UPLC-MS/MS method for the simultaneous analysis of AT7519 and acetaminophen in a mouse model of acute inflammation
Cartwright, J. A., Simpson, J. P., Homer, N. Z. M. & Rossi, A. G., 20 Mar 2023, Research Square .Research output: Working paper › Preprint
-
Gentrification and Food Environments: A Rapid Evidence Assessment
Gie, S. & Borthwick, F., 7 Mar 2023, (E-pub ahead of print) medRxiv, p. 1-24, 23 p.Research output: Working paper › Preprint
Open AccessFile -
Phenome-wide analysis identifies parent-of-origin effects on the human methylome associated with changes in the rate of aging
Gao, C., Amador, C., Walker, R. M., Campbell, A., Madden, R. A., Adams, M. J., Bai, X., Liu, Y., Li, M., Hayward, C., Porteous, D. J., Shen, X., Evans, K. L., Haley, C. S., McIntosh, A. M., Navarro, P. & Zeng, Y., 20 Jan 2023, bioRxiv.Research output: Working paper › Preprint
-
2022
The benefits and perils of import in small cattle breeding programs
Obsteter, J., Jenko, J., Pocrnic, I. & Gorjanc, G., 12 Dec 2022, (E-pub ahead of print) bioRxiv, at Cold Spring Harbor Laboratory.Research output: Working paper › Preprint
Open AccessFile -
Developing best practices for genotyping-by-sequencing analysis using linkage maps as benchmarks
Taniguti, C., Taniguti, L., Amadeu, R., Mollinari, M., Pereira, G., Riera-Lizarazu, O., Lau, J., Byrne, D., Gesteira, G., De Paula Oliveira, T., Ferreira, G. & Garcia, A., 25 Nov 2022, Cold Spring Publishing LLC, p. 1-24, 24 p. (bioRxiv).Research output: Working paper › Preprint
Open AccessFile -
West Nile Virus spread in Europe - phylogeographic pattern analysis and key drivers
Lu, L., Zhang, F., Oude Munnink, B., Munger, E., Sikkema, R., Pappa, S., Tsioka, K., Sinigaglia, A., Dal Molin, E., Shih, B., Günther, A., Pohlmann, A., Beer, M., Taylor, R. A., Bartumeus, F., Woolhouse, M., Aarestrup, F., Barzon, L., Papa, A. & Lycett, S. & 1 others, , 13 Nov 2022, bioRxiv.Research output: Working paper › Preprint
-
Early-life inflammatory markers and subsequent episodes of depression and psychotic experiences in the ALSPAC birth cohort
Edmondson-Stait, A. J., Shen, X., Adams, M. J., Barbu, M. C., Jones, H. J., Miron, V. E., Allardyce, J., Boardman, J. P., Lawrie, S. M., McIntosh, A. M., Khandaker, G. M., Kwong, A. S. F. & Whalley, H. C., 12 Jul 2022, medRxiv.Research output: Working paper › Preprint
-
Genomic selection for genotype performance and stability using information on multiple traits and multiple environments
Bančič, J., Ovenden, B., Gorjanc, G. & Tolhurst, D., 12 Jul 2022, (E-pub ahead of print) Research Square , p. 1-30, 29 p. (TAG Theoretical and Applied Genetics).Research output: Working paper › Preprint
Open AccessFile -
A method for partitioning trends in genetic mean and variance to understand breeding practices
De Paula Oliveira, T., Obsteter, J., Pocrnic, I., Heslot, N. & Gorjanc, G., 30 Jun 2022, bioRxiv, at Cold Spring Harbor Laboratory, (bioRxiv).Research output: Working paper › Preprint
Open AccessFile -
The suppressive potential of a gene drive in populations of invasive social wasps is currently limited
Meiborg, A. B., Faber, N., Taylor, B. A., Harpur, B. A. & Gorjanc, G., 30 Jun 2022, bioRxiv, p. 1-15, 15 p.Research output: Working paper › Preprint
Open AccessFile