Royal (Dick) School of Veterinary Studies

Research output

Research output per year 1976 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023

• 13126 Article
• 1118 Abstract
• 648 Meeting abstract
• 397 Conference contribution
• 2467 More
  • 354 Chapter
  • 272 Poster
  • 237 Review article
  • 208 Literature review
  • 207 Paper
  • 201 Letter
  • 155 Editorial
  • 147 Comment/debate
  • 145 Chapter (peer-reviewed)
  • 68 Other contribution
  • 67 Working paper
  • 53 Book
  • 46 Other
  • 30 Master's Thesis
  • 28 Other chapter contribution
  • 28 Digital or Visual Products
  • 28 Special issue
  • 27 Patent
  • 26 Software
  • 26 Doctoral Thesis
  • 22 Book/Film/Article review
  • 18 Commissioned report
  • 16 Preprint
  • 15 Web publication/site
  • 14 Other report
  • 7 Entry for encyclopedia/dictionary
  • 7 Featured article
  • 6 Foreword/postscript
  • 2 Conference article
  • 2 Short survey
  • 2 Artefact
  • 2 Discussion paper
  • 1 Exhibition

Research output per year

Research output per year

Search results

• 2022

  Covid-19 monitoring in Scottish wastewater: Lessons Learned Review

  Fletcher, I. & Lyall, C., 20 Oct 2022, (Unpublished) p. 1-17, 40 p.

  Research output: Working paper

  • wastewater 100%
  • program 79%
  • monitoring 79%
  • virus 26%
  • severe acute respiratory syndrome 21%

• A divide-and-conquer approach for genomic prediction in rubber tree using machine learning

  Aono, A. H., Francisco, F. R., Souza, L. M., Gonçalves, P. D. S., Scaloppi, E. J., Guen, V. L., Fritsche-Neto, R., Gorjanc, G., Quiles, M. G. & de Souza, A. P., 31 Mar 2022, bioRxiv, (bioRxiv).

  Research output: Working paper

  Open Access

  File

  • Hevea brasiliensis 100%
  • artificial intelligence 96%
  • prediction 55%
  • genomics 51%
  • marker-assisted selection 46%

• Genomic prediction with whole-genome sequence data in intensely selected pig lines

  Ros-Freixedes, R., Johnsson, M., Chen, C-Y., Valente, B. D., Herring, W. O., Gorjanc, G. & Hickey, J. M., 5 Feb 2022, bioRxiv, 50 p. (bioRxiv).

  Research output: Working paper

  Open Access

  File

  • Marker 100%
  • Swine 90%
  • Genome 77%
  • Datasets 38%
  • Pipeline 33%

• A multi-part strategy for introgression of exotic germplasm into elite plant breeding programs using genomic selection

  Breider, I., Gaynor, R., Gorjanc, G., Thorn, S., Pandey, M. K., Varshney, R. K. & Hickey, J., 12 Jan 2022, (E-pub ahead of print) Research Square .

  Research output: Working paper

  Open Access

  File

  • plant breeding 100%
  • marker-assisted selection 98%
  • introgression 97%
  • plant variety protection 94%
  • germplasm 85%

• Stem cell-derived macrophages as a new platform for studying host-pathogen interactions in livestock

  Meek, S., Watson, T., Eory, L., McFarlane, G., Wynne, F. J., McCleary, S., Dunn, L. E. M., Charlton, E., Criag, C., Shih, B., Regan, T., Taylor, R., Sutherland, L., Gossner, A., Chintoan-Uta, C., Fletcher, S., Beard, P., Hassan, M., Grey, F., Hope, J., & 16 othersStevens, M., Nowak-Imialek, M., Niemann, H., Ross, P. J., Tait-Burkard, C., Brown, S., Lefevre, L., Thomson, G., McColl, B. W., Lawrence, A. B., Archibald, A., Steinbach, F., Crooke, H. R., Gao, X., Liu, P. & Burdon, T., 10 Jan 2022, bioRxiv, at Cold Spring Harbor Laboratory.

  Research output: Working paper

  Open Access

  File

  • host-pathogen relationships 100%
  • stem cells 83%
  • macrophages 74%
  • livestock 67%
  • swine 30%
• 2021

  A study of the effectiveness of a detergent-based California mastitis test (CMT), using Ethiopian and Nigerian domestic detergents, for the detection of high somatic cell counts in milk and their reliability compared to the commercial UK CMT

  Rust, J. D., Christian, M. J., Vance, C. J., Bolajoko, M. B., Wong, J. T., Suarez Martinez, J., Allan, F. & Peters, A., 20 Sep 2021, (E-pub ahead of print) Gates Open Research.

  Research output: Working paper

  Open Access

  File

  • California mastitis test 100%
  • somatic cell count 78%
  • detergents 63%
  • milk 46%
  • mastitis 35%

• Foot-and-mouth disease virus localisation on follicular dendritic cells and sustained induction of neutralising antibodies is dependent on binding to complement receptors (CR2/CR1)

  Gordon, L., Mabbott, N., Wells, J., Kulik, L., Juleff, N., Charleston, B. & Perez-Martin, E., 8 Sep 2021, bioRxiv, at Cold Spring Harbor Laboratory.

  Research output: Working paper

  Open Access

  File

• Efficient ancestry and mutation simulation with msprime 1.0

  Baumdicker, F., Bisschop, G., Goldstein, D., Gower, G., Ragsdale, A. P., Tsambos, G., Zhu, S., Eldon, B., Ellerman, C. E., Galloway, J. G., Gladstein, A. L., Gorjanc, G., Guo, B., Jeffery, B., Kretzschmar, W. W., Lohse, K., Matschiner, M., Nelson, D., Pope, N. S., Quinto-Cortés, C. D., & 12 othersRodrigues, M. F., Saunack, K., Sellinger, T., Thornton, K., van Kemenade, H., Wohns, A. W., Wong, H. Y., Gravel, S., Kern, A. D., Koskela, J., Ralph, P. L. & Kelleher, J., 1 Sep 2021, bioRxiv, at Cold Spring Harbor Laboratory, (bioRxiv).

  Research output: Working paper

  Open Access

  File

  • Population Genetics 100%
  • Software quality 76%
  • Data structures 55%
  • Data storage equipment 40%

• The SARS-CoV-2 Alpha variant causes increased clinical severity of disease

  Pascall, D. J., Mollett, G., Blacow, R., Bulteel, N., Campbell, R., Campbell, A., Clifford, S., Davis, C., Da Silva Filipe, A., Fjodorova, L., Forrester, R., Goldstein, E., Gunson, R., Haughney, J., Holden, M. T. G., Honour, P., Hughes, J., James, E., Lewis, T., Lycett, S., & 8 othersMcHugh, M., Onishi, Y., Parcell, B., Robertson, D. L., Sakka, N. E., Shabaan, S., Shepherd, J. G. & Smollett, K., 24 Aug 2021, (E-pub ahead of print) medRxiv, (medRxiv).

  Research output: Working paper

  Open Access

  File

  • SARS Virus 100%
  • Scotland 58%
  • Infections 32%
  • Ventilation 30%
  • Oxygen 24%

• Secreted SARS-CoV-2 ORF8 modulates the cytokine expression profile of human macrophages

  Kriplani, N., Clohisey, S., Fonseca, S., Fletcher, S., Lee, H-M., Ashworth, J., Kurian, D., Lycett, S. J., Tait-Burkard, C., Baillie, J. K., Woolhouse, M. E. J., Carding, S. R., Stewart, J. P. & Digard, P., 18 Aug 2021, (E-pub ahead of print) bioRxiv, at Cold Spring Harbor Laboratory.

  Research output: Working paper

  Open Access

  File

• A type I IFN, prothrombotic hyperinflammatory neutrophil signature is distinct for COVID-19 ARDS­­­

  Reyes, L., Sanchez Garcia, M. A., Morrison, T., Howden, A. J. M., Watts, E. R., Arienti, S., Sadiku, P., Coelho, P., Mirchandani, A. S., Zhang, A., Hope, D., Clark, S. K., Singleton, J., Johnston, S., Grecian, R., Poon, A. S., McNamara, S., Harper, I., Fourman, M. H., Brenes, A. J., & 14 othersPathak, S., Lloyd, A., Rodriguez Blanco, G., von Kriegsheim, A., Ghesquiere, B., Vermaelen, W., Cologna, C. T., Dhaliwal, K., Hirani, N., Dockrell, D. H., Whyte, M. K. B., Griffith, D. M., Cantrell, D. & Walmsley, S. R., 25 Jun 2021, (E-pub ahead of print) Wellcome Open Research, (wellcome Open Research).

  Research output: Working paper

  Open Access

  File

  • Coronavirus 100%
  • Adult Respiratory Distress Syndrome 87%
  • Neutrophils 62%
  • Severe Acute Respiratory Syndrome 15%
  • Neutrophil Activation 15%

• Parental methyl-enhanced diet and in ovo corticosterone affect first generation Japanese quail (Coturnix coturnix japonica) development, behaviour and stress response.

  Boulton, K., Perez, J., Wilkinson, T., Hogan, K., Homer, N. Z. M., Robert, C., Smith, J., Meddle, S., Dunn, I., Watson, K. & Wilson, P., 3 May 2021, Research Square .

  Research output: Working paper

  Open Access

  File

  • Coturnix japonica 100%
  • corticosterone 92%
  • androstenedione 81%
  • stress response 73%
  • field experimentation 60%

• A gene drive does not spread easily in populations of the honey bee parasite Varroa destructor

  Faber, N., Meiborg, Y., McFarlane, G., Gorjanc, G. & Harpur, B. A., 30 Apr 2021, bioRxiv, at Cold Spring Harbor Laboratory.

  Research output: Working paper

  Open Access

  File

  • Varroa 100%
  • Varroa destructor 98%
  • honey bees 69%
  • parasites 50%
  • genes 25%

• Structural basis for the coiled-coil architecture of human CtIP

  Morton, C. R., Rzechorzek, N. J., Maman, J. D., Kuramochi, M., Sekiguchi, H., Rambo, R., Sasaki, Y. C., Davies, O. R. & Pellegrini, L., 5 Mar 2021, bioRxiv, at Cold Spring Harbor Laboratory.

  Research output: Working paper

  • Recombinational DNA Repair 100%
  • DNA 64%
  • X-Rays 59%
  • X Ray Crystallography 52%
  • Double-Stranded DNA Breaks 44%

• Epidemic waves of COVID-19 in Scotland: a genomic perspective on the impact of the introduction and relaxation of lockdown on SARS-CoV-2

  Lycett, S. J., Hughes, J., McHugh, M. P., Filipe, A. D. S., Dewar, R., Lu, L., Doherty, T., Shepherd, A., Inward, R., Rossi, G., Balaz, D., Kao, R. R., Rooke, S., Cotton, S., Gallagher, M. D., Lopez, C. B., O’Toole, Á., Scher, E., Hill, V., McCrone, J. T., & 34 othersColquhoun, R. M., Jackson, B., Williams, T. C., Williamson, K. A., Johnson, N., Smollett, K., Mair, D., Carmichael, S., Tong, L., Nichols, J., Brunker, K., Shepherd, J. G., Li, K., Aranday-Cortes, E., Parr, Y. A., Broos, A., Nomikou, K., McDonald, S. E., Niebel, M., Asamaphan, P., Starinskij, I., Jesudason, N., Shah, R., Sreenu, V. B., Stanton, T., Shaaban, S., MacLean, A., Woolhouse, M., Gunson, R., Templeton, K., Thomson, E. C., Rambaut, A., Holden, M. T. G. & Robertson, D. L., 20 Jan 2021, Cold Spring Harbor Laboratory Press.

  Research output: Working paper

  Open Access

  File

  • SARS Virus 100%
  • Scotland 78%
  • Epidemics 58%
  • National Health Programs 20%
  • Genome 19%

• The cost of asking 'say that again?': a social capital theory view into how lecture recording supports widening participation

  MacKay, J. R. D., Nordmann, E., Murray, L., Browitt, A., university of glasgow, M. & Hutchison, J., 7 Jan 2021, EdArXiv, 17 p.

  Research output: Working paper

  File

  • recording 100%
  • social capital 99%
  • costs 63%
  • participation 59%
  • university teacher 30%

• Complete microglia deficiency accelerates prion disease without enhancing CNS prion accumulation

  Bradford, B., McGuire, L., Hume, D. A., Pridans, C. & Mabbott, N., 6 Jan 2021, bioRxiv, at Cold Spring Harbor Laboratory, (Cell Reports).

  Research output: Working paper

  Open Access

  File

  • Prions 100%
  • Prion Diseases 99%
  • Microglia 82%
  • Neuroprotection 28%
  • Astrocytes 24%

• Lights, camera, active! Appreciation of active learning predicts positive attitudes towards lecture capture

  Nordmann, E., Clark, A., Spaeth, E. & MacKay, J. R. D., 5 Jan 2021, PsyArXiv.

  Research output: Working paper

  Open Access

  File

  • recording 100%
  • learning 38%
  • instructor 33%
  • attitude scale 25%
  • interactive media 23%
• 2020

  Age Related Changes in the Circulating Leukocyte Transcriptome in Dairy Cows

  Buggiotti, L., Cheng, Z., Salavati, M. & Wathes, D. C., 28 Dec 2020, Research Square .

  Research output: Working paper

  • leukocytes 100%
  • transcriptome 98%
  • dairy cows 94%
  • cows 78%
  • genes 25%

• Scaling Systematic Literature Reviews with Machine Learning Pipelines

  Goldfarb-Tarrant, S., Robertson, A., Lazic, J., Tsouloufi, T., Donnison, L. & Smyth, K., 9 Oct 2020, arXiv.org.

  Research output: Working paper

  • Pipelines 100%
  • Machine learning 96%
  • Labeling 32%
  • Application programming interfaces (API) 31%
  • Automation 24%

• Genetic mechanisms of critical illness in Covid-19

  Pairo-Castineira, E., Clohisey, S., Klaric, L., Bretherick, A. D., Rawlik, K., Parkinson, N., Pasko, D., Walker, S., Richmond, A., Fourman, M. H., Law, A., Furniss, J., Gountouna, E., Wrobel, N., Russell, C. D., Moutsianas, L., Wang, B., Meynert, A. M., Yang, Z., Zhai, R., & 39 othersZheng, C., Griffith, F., Oosthuyzen, W., Shih, B., Keating, S., Zechner, M., Haley, C., Porteus, D. J., Hayward, C., Knight, J., Summers, C., Shankar-Hari, M., Turtle, L., Ho, A., Hinds, C., Horby, P., Nichol, A., Maslove, D. M., Ling, L., Klenerman, P., McAuley, D. F., Montgomery, H., Walsh, T. S., The GenOMICC Investigators, The ISARIC4C Investigators, The Covid-19 Human Genetics Initiative, Shen, X., Rowan, K., Fawkes, A., Murphy, L., Ponting, C. P., Tenesa, A., Caulfield, M., Scott, R., Openshaw, P. J. M., Semple, M. G., Vitart, V., Wilson, J. F. & Baillie, J. K., 25 Sep 2020, medRxiv.

  Research output: Working paper

  • Critical Illness 100%
  • Genome-Wide Association Study 56%
  • Intensive Care Units 44%
  • Dipeptidyl-Peptidases and Tripeptidyl-Peptidases 44%
  • Interferon Receptors 42%

• Primary sex determination in chickens depends on DMRT1 dosage, but gonadal sex does not determine secondary sexual characteristics in adult birds

  Ioannidis, J., Taylor, G., Zhao, D., Liu, L., Idoko-Akoh, A., Gong, D., Lovell-Badge, R., Guioli, S., McGrew, M. & Clinton, M., 19 Sep 2020, bioRxiv, at Cold Spring Harbor Laboratory.

  Research output: Working paper

  Open Access

  File

  • transcription factors 100%
  • chickens 90%
  • gender 78%
  • birds 78%
  • dosage 66%

• Ecological niche adaptation of a bacterial pathogen associated with reduced zoonotic potential

  Kirkwood, M., Vohra, P., Bawn, M., Thilliez, G., Pye, H., Tanner, J., Chintoan-Uta, C., Branchu, P., Petrovska, L., Dallman, T., Hall, N., Stevens, M. & Kingsley, R. A., 9 Sep 2020, bioRxiv, at Cold Spring Harbor Laboratory.

  Research output: Working paper

  Open Access

  File

  • niches 100%
  • serotypes 98%
  • pathogens 67%
  • swine 59%
  • food safety 44%

• Single generation allele introgression into pure chicken breeds using Sire Dam Surrogate (SDS) mating

  Ballantyne, M., Woodcock, M., Doddamani, D., Hu, T., Taylor, L., Hawken, R. & McGrew, M., 3 Sep 2020, bioRxiv, at Cold Spring Harbor Laboratory.

  Research output: Working paper

  Open Access

  File

  • chicken breeds 100%
  • dams (mothers) 82%
  • sires 74%
  • introgression 73%
  • alleles 51%

• Temporal and genomic analysis of additive genetic variance in breeding programmes

  De Castro Lara, L., Pocrnic, I., Gaynor, C. & Gorjanc, G., 31 Aug 2020, bioRxiv, at Cold Spring Harbor Laboratory.

  Research output: Working paper

  Open Access

  File

  • genetic variance 100%
  • breeding programs 75%
  • genomics 57%
  • pedigree 39%
  • linkage disequilibrium 27%

• Real-Time Monitoring of COVID-19 in Scotland

  Calder-Gerver, G. D., Mazeri, S., Haynes, S., Simonet, C. A., Woolhouse, M. EJ. & Brown, H., 2 Aug 2020, medRxiv.

  Research output: Working paper

  Open Access

  File

  • health services 100%
  • monitoring 86%
  • surveillance 78%
  • health risk 74%
  • public health 72%

• Registration of the East Coast Fever Infection and Treatment Method vaccine (Muguga cocktail) in East Africa.

  Peters, A., Toye, P., Spooner, P. R., Giulio, G. D. & Lynen, G., 8 Jul 2020, Gates Open Research.

  Research output: Working paper

  Open Access

  File

  • theileriosis 100%
  • Eastern Africa 80%
  • vaccines 63%
  • Theileria parva 52%
  • Malawi 46%

• Genomic selection strategies for clonally propagated crops

  Werner, C., Gaynor, C., Sargent, D., Lillo, A., Gorjanc, G. & Hickey, J., 15 Jun 2020, bioRxiv, at Cold Spring Harbor Laboratory.

  Research output: Working paper

  Open Access

  File

• A Two-Part Strategy using Genomic Selection in Hybrid Crop Breeding Programs

  Powell, O., Gaynor, C., Gorjanc, G., Werner, C. & Hickey, J., 25 May 2020, bioRxiv, at Cold Spring Harbor Laboratory.

  Research output: Working paper

  Open Access

  File

  • plant breeding 100%
  • marker-assisted selection 98%
  • genetic improvement 81%
  • breeding programs 81%
  • inbreeding 49%

• Identification of MAZ as a novel transcription factor regulating erythropoiesis

  Deen, D., Butter, F., Holland, M. L., Samara, V., Sloane-Stanley, J. A., Ayyub, H., Mann, M., Garrick, D. & Vernimmen, D., 10 May 2020.

  Research output: Working paper

  Open Access

  File

  • Erythropoiesis 100%
  • Zinc Fingers 97%
  • Transcription Factors 64%
  • Erythroid Cells 36%
  • Genetic Enhancer Elements 18%

• 10 simple rules for supporting a temporary online pivot in higher education

  Nordmann, E., Horlin, C., Hutchison, J., university of glasgow, J-A., Robson, L., Seery, M. & MacKay, J. R. D., 27 Apr 2020, PsyArXiv.

  Research output: Working paper

  Open Access

  File

  • learning 100%
  • contingency 92%
  • education 89%
  • Teaching 84%
  • student 24%

• A putative genomic map for resistance of Bos indicus cattle in Cameroon to bovine tuberculosis

  Callaby, R., Kelly, R., Mazeri, S., Egbe, F., Benedictus, L., Clark, E., Wilson, A., Bronsvoort, M., Salavati, M. & Muwonge, A., 26 Apr 2020, bioRxiv, at Cold Spring Harbor Laboratory.

  Research output: Working paper

  Open Access

  File

  • bovine tuberculosis 100%
  • Cameroon 87%
  • zebu 86%
  • genomics 48%
  • cattle 46%

• Microbial Stimulation Reverses the Age-Related Decline in M Cells in Aged Mice

  Donaldson, D., Pollock, J., Vohra, P., Stevens, M. & Mabbott, N., 18 Feb 2020, bioRxiv, at Cold Spring Harbor Laboratory.

  Research output: Working paper

  Open Access

  File

  • mice 100%
  • Peyer's patches 95%
  • intestinal microorganisms 69%
  • cells 54%
  • oral vaccination 49%

• Social Media Contexts Moderate Perceptions of Animals

  Riddle, E. & MacKay, J. R. D., 11 Feb 2020, OSF, (OSFpreprints).

  Research output: Working paper

  Open Access

  File

  • animal 100%
  • social media 98%
  • narrative 57%
  • online survey 28%
  • social network 24%

• Survey evidence on the impact of lecture recording on equality, diversity and inclusion aims in higher education

  MacKay, J. R. D., 13 Jan 2020, PsyArXiv.

  Research output: Working paper

  Open Access

  File

  • recording 100%
  • equality 92%
  • inclusion 76%
  • evidence 47%
  • education 34%

• Contrasting population genetics of cattle-and buffalo-derived Theileria annulata causing tropical theileriosis

  Chaudhry, U. N., Ali, Q., Zheng, L., Rashid, I., Shabbir, M. Z., Zahid, M. N., Ashraf, K., Evans, M., Rafiq, S., Oneeb, M., Morrison, I. & Sargison, N., 11 Jan 2020, bioRxiv, at Cold Spring Harbor Laboratory.

  Research output: Working paper

  Open Access

  File

  • Theileria annulata 100%
  • theileriosis 94%
  • buffaloes 66%
  • population genetics 61%
  • cattle 42%
• 2019

  Nurturing cross-disciplinary research: Institutional logics, hybrid spaces and meta-organization at a research university

  Freeman, P. L., Marr, I., Millar, A. J. & Kitagawa, F., 9 Dec 2019, SocArXiv.

  Research output: Working paper

  Open Access

  File

  • organization 100%
  • university 78%
  • research project 62%
  • life cycle 28%
  • stakeholder 19%

• Nurturing project organizations: A mode 2 mission for the university?

  Freeman, P. L., Marr, I., Millar, A. J. & Kitagawa, F., 9 Dec 2019, SocArXiv.

  Research output: Working paper

  Open Access

  File

  • project organization 100%
  • university 31%
  • management 26%
  • leadership 17%
  • staff 16%

• A genome-wide loss-of-function screen identifies Toxoplasma gondii genes that determine fitness in interferon gamma-activated murine macrophages

  Wang, Y., Sangare, L. O., Paredes-Santos, T. C., Krishnamurthy, S., Hassan, M., Furuta, A. M., Markus, B. M., Lourido, S. & Saeij, J. P. J., 6 Dec 2019, bioRxiv, at Cold Spring Harbor Laboratory, (bioRxiv).

  Research output: Working paper

  Open Access

  File

  • Toxoplasma gondii 100%
  • interferon-gamma 99%
  • Toxoplasma 94%
  • macrophages 78%
  • mice 50%

• Single-cell RNA-seq reveals CD16- monocytes as key regulators of human monocyte transcriptional response to Toxoplasma

  Patir, A., Gossner, A., Ramachandran, P., Alves, J., Freeman, T., Henderson, N., Watson, M. & Hassan, M., 5 Dec 2019, bioRxiv, at Cold Spring Harbor Laboratory, (bioRxiv).

  Research output: Working paper

  Open Access

  File

  • RNA-Seq 100%
  • Toxoplasma 96%
  • Monocytes 71%
  • Parasites 15%
  • Chemokines 11%

• Simulating isolated populations to identify emerging genetic structure

  Hosking, C., Ogden, R. & Senn, H., 25 Nov 2019, (E-pub ahead of print) bioRxiv, at Cold Spring Harbor Laboratory, (bioRxiv).

  Research output: Working paper

  Open Access

  File

  • genetic drift 100%
  • statistics 41%
  • population genetics 39%

• Novel metabarcoded DNA sequencing tool for the detection of Plasmodium species in malaria positive patients

  Wahab, A., Shaukat, A., Ali, Q., Hussain, M., Khan, T. A., Khan, M. A. U., Rashid, I., Saleem, M. A., Evans, M., Sargison, N. & Chaudhry, U., 10 Oct 2019, (Unpublished) bioRxiv, at Cold Spring Harbor Laboratory.

  Research output: Working paper

  • Plasmodium 100%
  • malaria 88%
  • sequence analysis 63%
  • Pakistan 26%
  • infection 22%

• Genetic diversity and multiplicity of infection in Fasciola gigantica isolates of Pakistani livestock

  Ur-Rehman, Z., Zahid, O., Rashid, I., Ali, Q., Akbar, M. H., Oneeb, M., Shehzad, W., Ashraf, K., Sargison, N. & Chaudhry, U., 1 Oct 2019, bioRxiv, at Cold Spring Harbor Laboratory.

  Research output: Working paper

  Open Access

  File

  • Fasciola gigantica 100%
  • livestock 57%
  • genetic variation 43%
  • infection 36%
  • parasites 27%

• Circadian protein regulation in the green lineage II. The clock gene circuit controls a phospho-dawn in Arabidopsis thaliana

  Krahmer, J., Hindle, M., Perby, L. K., Nielsen, T. H., Van Ooijen, G., Halliday, K. J., Bihan, T. L. & Millar, A. J., 8 Sep 2019, bioRxiv, at Cold Spring Harbor Laboratory.

  Research output: Working paper

  Open Access

  • Arabidopsis 100%
  • Gene Regulatory Networks 83%
  • Proteins 28%
  • Plant Genes 20%
  • Phosphofructokinase-2 20%

• A mini-atlas of gene expression for the domestic goat (Capra hircus) reveals transcriptional differences in immune signatures between sheep and goats

  Muriuki, C., Bush, S. J., Salavati, M., McCulloch, M. E. B., Lisowski, Z. M., Agaba, M., Djikeng, A., Hume, D. A. & Clark, E. L., 25 Jul 2019, bioRxiv, at Cold Spring Harbor Laboratory.

  Research output: Working paper

  Open Access

  File

• Capillary hemoglobin electrophoresis of healthy and anemic dogs: quantification, validation, and reference intervals of hemoglobin fractions

  Oikonomidis, I., Tsouloufi, T., Mylonakis, M. & Kritsepi-Konstantinou, M., 9 May 2019, (E-pub ahead of print) bioRxiv, at Cold Spring Harbor Laboratory.

  Research output: Working paper

  Open Access

  File

  • hemoglobin 100%
  • electrophoresis 99%
  • dogs 88%
  • anemia 42%
  • capillary electrophoresis 31%

• Estimating individuals’ genetic and non-genetic effects underlying infectious disease transmission from temporal epidemic data

  Pooley, C. M., Marion, G., Bishop, S. C., Bailey, R. & Doeschl-Wilson, A. B., 26 Apr 2019, bioRxiv, at Cold Spring Harbor Laboratory.

  Research output: Working paper

  Open Access

  File

  • disease transmission 100%
  • infectious diseases 88%
  • pathogenicity 69%
  • single nucleotide polymorphism 46%
  • infection 32%

• Elimination of reference mapping bias reveals robust immune related allele-specific expression in cross-bred sheep

  Salavati, M., Bush, S., Palma-Vera, S., McCulloch, M., Hume, D. & Clark, E., 25 Apr 2019, (E-pub ahead of print) bioRxiv, at Cold Spring Harbor Laboratory, (bioRxiv).

  Research output: Working paper

  File

  • crossbreds 100%
  • sheep 75%
  • alleles 75%
  • allelic imbalance 47%
  • tissues 42%

• Evidence for the F200Y (TAC) mutation conferring benzimidazole resistance in a southern USA cattle population of Haemonchus placei spreading from a single emergence

  Chaudhry, U., Redman, E. M., Kaplan, R. M., Yazwinski, T., Sargison, N. & Gilleard, J. S., 21 Mar 2019, bioRxiv, at Cold Spring Harbor Laboratory.

  Research output: Working paper

  • Haemonchus placei 100%
  • benzimidazole 80%
  • mutation 42%
  • cattle 37%
  • benzimidazoles 29%

• The quail as an avian model system: its genome provides insights into social behaviour, seasonal biology and infectious disease response.

  Morris, K., Hindle, M., Boitard, S., Burt, D., Danner, A. F., Eory, L., Forrest, H. L., Gourichon, D., Gros, J., Gourichon, L., Hillier, L., Jaffredo, T., Khoury, H., Leterrier, C., Loudon, A., Mason, AS., Meddle, S., Minvielle, F., Minx, P., Pitel, F., & 8 othersSeiler, J. P., Shimmura, T., Tomlinson, C., Vignal, A., Webster, R. G., Yoshimura, T., Warren, W. C. & Smith, J., 13 Mar 2019, (bioRxiv).

  Research output: Working paper

  Open Access

  File

  • quails 100%
  • infectious diseases 95%
  • social behavior 92%
  • Biological Sciences 68%
  • genome 52%