University of Edinburgh

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2024

Faceted-HyperSARA: Parallel faceted imaging in radio interferometry
Thouvenin, P-A., Dabbech, A., Jiang, M., Abdulaziz, A., Jackson, W. A. & Wiaux, Y., Jun 2024
Research output: Non-textual form › Software

Open Access
LucyL-J/Quantifying-SIM: v1.2.0
Lansch-Justen, L., El Karoui, M. & Alexander, H. K., 10 May 2024
Research output: Non-textual form › Software

Open Access
The impact of within-host coinfection interactions on between-host parasite transmission dynamics varies with spatial scale
Keegan, S., Pedersen, A. B. & Fenton, A., 15 Mar 2024, (Unpublished)
Research output: Non-textual form › Software
EPIC version 0.14.1
Frey, M., Böing, S., Dritschel, D. & Apóstolo, R., 26 Feb 2024
Research output: Non-textual form › Software

Open Access
2023
Codebase release 1.1 for TASEPy
Ciandrini, L., Crisostomo, R. L. & Szavits-Nossan, J., 13 Dec 2023
Research output: Non-textual form › Software

Open Access
Assassin's Creed Mirage
Anderson, G., 12 Oct 2023
Research output: Non-textual form › Software
IOR version 4.0.0 release candidate 1
Jackson, W. A., 22 Feb 2023
Research output: Non-textual form › Software

Open Access
Digital Munya 2
Anderson, G., Slingluff, S., Etefaghi, D. & Vural, D., 2023
Research output: Non-textual form › Software
The Cordoba Journey
Abertay, 2023
Research output: Non-textual form › Software

Open Access
2022
softwaresaved/esrc-software-study: Code release for Zenodo
Antonioletti, M., Chue Hong, N. P. & Aragon, S., 7 Dec 2022
Research output: Non-textual form › Software

Open Access
2021
academictwitteR: an R package to access the Twitter Academic Research Product Track v2 API endpoint
Barrie, C. & Ho, J. C., 7 Jun 2021
Research output: Non-textual form › Software

Open Access
OGGM/oggm: v1.5.0
Maussion, F., Roth, T., Dusch, M., Recinos Rivas, B., Vlug, A., Champollion, N., Marzeion, B., Schuster, L., Oberrauch, M., Landmann, J., Eis, J., Jarosch, A., Hanus, S., Li, F., Rounce, D., Castellani, M., Bartholomew, S. L., Merrill, C., Loibl, D., Ultee, L., & 3 othersSmith, S., Ub, A. & Gregor, P., 16 May 2021
Research output: Non-textual form › Software

Open Access
ICBioMark: Data-Driven Design of Targeted Gene Panels for Estimating Immunotherapy Biomarkers
Bradley, J. R. & Cannings, T. I., 18 Mar 2021
Research output: Non-textual form › Software
Carbon calculator tool for school catering
Tregear, A. & Wilkinson, A., 2021
Research output: Non-textual form › Software

Open Access
2020

IOR version 3.3.0
Jackson, W. A., Dec 2020
Research output: Non-textual form › Software

Open Access
w[i]nd: An interactive and generative audiovisual composition/installation in procedural and orchestrated space
Rawlinson, J., 20 Apr 2020
Research output: Non-textual form › Software

Open Access
inventoryanalytics: A Python library dedicated to Inventory Analytics.
Rossi, R., 2020
Research output: Non-textual form › Software
2019
pyNMMSO, a python implementation of the Niching Migratory Multi-Swarm Optimiser
Hume, A., Wood, C. & Millar, A. J., 24 Dec 2019
Research output: Non-textual form › Software
Urine-patches-detection: Second release
Maire, J., 9 Oct 2019
Research output: Non-textual form › Software

Open Access
2018
ePython - a tiny Python implementation for micro-core architectures
Brown, N., 30 Apr 2018
Research output: Non-textual form › Software
Met Office NERC Cloud model (MONC)
Brown, N. & Weiland, M., 30 Apr 2018
Research output: Non-textual form › Software
Gutter Synthesis Software
Mudd, T., 2 Apr 2018
Research output: Non-textual form › Software
2017
RPEnsemble: Random Projection Ensemble Classification
Cannings, T. & Samworth, R., 7 Oct 2017
Research output: Non-textual form › Software
BioDare2, online data analysis resource
Zielinski, T. & Millar, A., Jun 2017
Research output: Non-textual form › Software

Open Access
jsdp: A Java stochastic Dynamic Programming Library
Rossi, R., 2017
Research output: Non-textual form › Software

Open Access
syat-choco: a Choco extension for Declarative Statistics
Rossi, R., 2017
Research output: Non-textual form › Software

Open Access
2016
AlphaSeqOpt: optimal allocation of fixed sequencing budget to focal individuals
Hickey, J., 1 Oct 2016
Research output: Non-textual form › Software
AlphaSeqOpt: software package for determining the optimum distribution of sequencing resources
Hickey, J., 1 Oct 2016
Research output: Non-textual form › Software
AlphaSim: Software for Breeding Program Simulation
Hickey, J., 22 Sept 2016
Research output: Non-textual form › Software
AlphaImpute: software package for imputing and phasing genotype data
Hickey, J., 1 Sept 2016
Research output: Non-textual form › Software
AlphaPhase: software package for phasing genotype data
Hickey, J., 1 Sept 2016
Research output: Non-textual form › Software
Broadwick: A Framework for Computational Epidemiology (in java)
O'Hare, A., Lycett, S., Doherty, T., Monteiro Salvador, L. S. & Kao, R. R., 4 Feb 2016
Research output: Non-textual form › Software

Open Access
ionr: Test for Indifference of Indicator
Vainik, U. & Mottus, R., 2016
Research output: Non-textual form › Software
2015
LSD (Least-Squares Dating) Software: Fast dating using least-squares criteria and algorithms (C++ code)
To, T. H., Jung, M., Lycett, S. & Gascuel, O., 16 Sept 2015
Research output: Non-textual form › Software
AlphaSim: software package for simulating sequence
Hickey, J., 1 Feb 2015
Research output: Non-textual form › Software
poRe: an R package for the visualization and analysis of nanopore sequencing data
Watson, M., Thomson, M., Risse, J., Talbot, R., Santoyo-Lopez, J., Gharbi, K. & Blaxter, M., Jan 2015
Research output: Non-textual form › Software
2014
SPRINT v1.0.7 Software Release
Troup, E., Ghazal, P., Sloan, T., Forster, T. & Cebamanos, L., 29 Sept 2014
Research output: Non-textual form › Software
Spatial Memories
Hood, B. & Butchart, B., Jul 2014
Research output: Non-textual form › Software
SPRINT v1.0.6 Software Release
Troup, E., Forster, T., Sloan, T., Ghazal, P. & Cebamanos, L., Jun 2014
Research output: Non-textual form › Software
FAVE (Forced Alignment and Vowel Extraction) Suite Version 1.1.3
Rosenfelder, I., Fruehwald, J., Evanini, K., Seyfarth, S., Gorman, K., Prichard, H. & Yuan, J., 15 May 2014
Research output: Non-textual form › Software
Discrete Spatial Phylo-Simulator: Individual based modelling code for structured populations including phylogenetic tree outputs (in java).
Lycett, S., 2014, (In preparation)
Research output: Non-textual form › Software
oBB
Cartis, C., Fowkes, J. & Gould, N., 2014
Research output: Non-textual form › Software
2013

umx: Making Structural Equation Modeling (SEM) in R quick & powerful
Bates, T. C., 18 Nov 2013, (E-pub ahead of print)
Research output: Non-textual form › Software

Open Access
SPRINT v1.0.5 Software Release: SPRINT 1.0.5 - November 2013
Troup, E., Forster, T., Sloan, T., Ghazal, P. & Cebamanos, L., Nov 2013
Research output: Non-textual form › Software
SPRINT v1.0.5 Software Release
Troup, E., Forster, T., Sloan, T., Cebamanos, L. & Ghazal, P., Nov 2013
Research output: Non-textual form › Software
QTIWorks
McKain, D., 19 Aug 2013
Research output: Non-textual form › Software
Cluster Picker and Cluster Matcher: A tool combination for the phylogenetic analysis of clusters of nucleotide sequences (in java)
Lycett, S., Hodcroft, E. & Ragonnet-Cronin, M., 13 Jun 2013
Research output: Non-textual form › Software

Open Access
viRome: an R package for the visualization and analysis of viral small RNA sequence datasets
Watson, M., Schnettler, E. & Kohl, A., 24 May 2013
Research output: Non-textual form › Software
SPRINT v1.0.4 Software Release
Troup, E., Mitchell, L., Sloan, T., Robertson, K., Forster, T. & Ghazal, P., Jan 2013
Research output: Non-textual form › Software
kruX: Kruskal-Wallis tests by matrix multiplication
Michoel, T., 2013
Research output: Non-textual form › Software