Andrew Millar

Search results

• Algal phospho- and protein rhythms mass spec data

  Imrie, L. (Creator), Millar, A. (Creator), Noordally, Z. (Creator), Hindle, M. (Creator), Martin, S. (Creator), Seaton, D. (Creator), Simpson, I. (Creator), Le Bihan, T. (Creator), Imrie, L. (Data Manager) & Imrie, L. (Owner), Edinburgh DataVault, 2019

  DOI: 10.7488/8a96caae-db2a-42c5-9361-e366faa26e3f, https://www.ebi.ac.uk/pride/archive/

  Dataset

• Plant Systems Modelling database

  Millar, A. (Creator), University of Edinburgh, 2009

  https://fairdomhub.org/projects/129 and one more link, http://www.plasmo.ed.ac.uk (show fewer)

  Dataset

• Spatiotemporal clock patterns in the leaf blade

  Millar, A. (Creator), Wenden, B. (Creator) & Hodge, S. (Creator), Edinburgh DataShare, 4 May 2021

  DOI: 10.7488/ds/3030, https://www.pnas.org/content/early/2012/04/09/1118814109

  Dataset

• The reduced kinome of Ostreococcus tauri: core eukaryotic signalling components in a tractable model species

  Hindle, M. (Creator) & Millar, A. (Creator), Edinburgh DataShare, 2014

  DOI: 10.7488/ds/72

  Dataset

• Data Sharing Practices in the MRC Circadian Mental Health Network.

  Deeb, H. (Researcher), Zielinski, T. (Project Manager) & Millar, A. (Project Leader), Zenodo, 6 Sept 2024

  DOI: 10.5281/zenodo.13710749

  Dataset

• Circadian expression of genes: modelling the Arabidopsis circadian clock

  Edwards, K. D. (Creator) & Millar, A. (Creator), University of Edinburgh, 2005

  http://affymetrix.arabidopsis.info/narrays/experimentpage.pl?experimentid=108 and one more link, http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5612 (show fewer)

  Dataset

• Circadian gene expression under different light treatments by transcriptome profiling on microarrays

  Edwards, K. D. (Creator) & Millar, A. (Creator), University of Edinburgh, 2007

  http://affymetrix.arabidopsis.info/narrays/experimentpage.pl?experimentid=196

  Dataset

• Data files and analysis scripts for Seaton et al. "Photoperiodic control of the Arabidopsis proteome reveals a translational coincidence mechanism", bioRxiv 2017, Mol. Syst. Biol. 2018

  Seaton, D. D. (Creator) & Millar, A. (Creator), Edinburgh DataShare, 21 Feb 2018

  DOI: 10.7488/ds/2309, https://fairdomhub.org/investigations/163

  Dataset

• Absolute units for proteins in Arabidopsis clock models up to U2020.5

  Urquiza Garcia, U. (Creator), Halliday, K. (Supervisor) & Millar, A. (Supervisor), Zenodo, 19 Dec 2024

  DOI: 10.5281/zenodo.14526989

  Dataset

• Circadian Clock Experiments: rhythmic transcriptome of dark-grown, temperature-entrained seedlings

  Hall, A. (Creator) & Millar, A. (Creator), University of Edinburgh, 2005

  http://affymetrix.arabidopsis.info/narrays/experimentpage.pl?experimentid=2

  Dataset

• Eleven partial DNA sequences of orthologues of the flowering time gene FLC in cultivars of Brassica oleracea.

  Salathia, N. S. (Creator), Millar, A. (Creator) & King, G. J. (Creator), University of Edinburgh, 2003

  http://www.ncbi.nlm.nih.gov/nuccore/EF158117 and 10 more links, http://www.ncbi.nlm.nih.gov/nuccore/EF158118, http://www.ncbi.nlm.nih.gov/nuccore/EF158119, http://www.ncbi.nlm.nih.gov/nuccore/EF158120, http://www.ncbi.nlm.nih.gov/nuccore/EF158121, http://www.ncbi.nlm.nih.gov/nuccore/EF158122, http://www.ncbi.nlm.nih.gov/nuccore/EF158123, http://www.ncbi.nlm.nih.gov/nuccore/EF158124, http://www.ncbi.nlm.nih.gov/nuccore/EF158125, http://www.ncbi.nlm.nih.gov/nuccore/EF158126, http://www.ncbi.nlm.nih.gov/nuccore/EF158127 (show fewer)

  Dataset

• Identifying targets of FLC at 27oC by expression profiling

  Edwards, K. D. (Creator) & Millar, A. (Creator), University of Edinburgh, 2006

  Dataset

• Data sets for Millar et al. bioRxiv 2015

  Millar, A. (Creator), Carrington, J. T. (Creator), Tee, W. V. (Creator) & Hodge, S. (Creator), bioRxiv, at Cold Spring Harbor Laboratory, 17 Dec 2015

  DOI: 10.1101/034629, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=2841 and 21 more links, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13630953803730, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13618784212904, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13619780272531, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13615365050841, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13661271159675, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13650039169340, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13644021710933, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13631095320942, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13639713266200, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=12729899933214, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=12730739255199, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=12730752301671, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=12730527312073, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13631017726171, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13615471409903, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13624982192162 , https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13649886952409, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13618962781900, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13643892291642, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13637871113032, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13649842953637 (show fewer)

  Dataset

• Identifying Y candidate genes by transcriptome microarray assays

  Millar, A. (Creator), University of Edinburgh, 2007

  http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE19263 and one more link, http://affymetrix.arabidopsis.info/narrays/experimentpage.pl?experimentid=430 (show fewer)

  Dataset

• Data, Code and Models for Flis et al. RS Open Biology 2015

  Millar, A. (Creator), Zielinski, T. (Data Manager), Flis, A. (Creator), Mengin, V. (Creator), Stitt, M. (Creator), Fernández, A. P. (Creator), McWatters, H. G. (Creator) & Halliday, K. (Creator), The Royal Society, 2015

  https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=12820611467827 and 30 more links, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=12820610743262, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=12820611319996, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=12820611188065, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=12820611587928, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=12820606741450, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=12820610913763, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13228354371807, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=12962296599986, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=12962294335805, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=2841, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=2842, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=2843 , https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13228298288040, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13227619871305, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13228357183121, http://sourceforge.net/projects/biodare/, http://www.biodare.ed.ac.uk, http://sourceforge.net/projects/sbsi/, http://www.sbsi.ed.ac.uk, http://www.plasmo.ed.ac.uk/plasmo/models/model.shtml?accession=PLM_71&version=1, http://www.plasmo.ed.ac.uk/plasmo/models/model.shtml?accession=PLM_71&version=2, http://www.plasmo.ed.ac.uk/plasmo/models/model.shtml?accession=PLM_1041&version=1, http://www.plasmo.ed.ac.uk/plasmo/models/model.shtml?accession=PLM_1042&version=1, http://www.plasmo.ed.ac.uk/plasmo/models/model.shtml?accession=PLM_1043&version=1, http://www.plasmo.ed.ac.uk/plasmo/models/model.shtml?accession=PLM_1044&version=1, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13227622661196, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13228357183121, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=3488, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=3492, http://www.plasmo.ed.ac.uk/plasmo/models/model.shtml?accession=PLM_1045&version=1 (show fewer)

  Dataset

• Timeseries used in Zielinski et al. Strengths and Limitations of Period Estimation Methods

  Zielinski, T. (Creator) & Millar, A. (Creator), Edinburgh DataShare, 22 Oct 2019

  DOI: 10.7488/ds/2636, https://europepmc.org/abstract/MED/24809473 and one more link, https://doi.org/10.1371/journal.pone.0096462 (show fewer)

  Dataset

• Proteomic data from "Sample preparation for phosphoproteomic analysis of circadian time series in Arabidopsis thaliana"

  Krahmer, J. (Creator), Martin, S. (Creator), Hindle, M. (Creator), Le Bihan, T. (Creator) & Millar, A. (Creator), PRIDE database hosted by European Bioinformatics Institute, EBI, 2016

  DOI: 10.7488/ba4de74b-7d98-48c8-b587-c43f44dc37c9, http://www.ebi.ac.uk/pride/archive/projects/PXD001134

  Dataset

• PyOmeroUpload: A Python toolkit for uploading images and metadata to OMERO

  Hay, J. (Creator), Troup, E. (Creator), Clark, I. B. N. (Creator), Pietsch, J. (Creator), Zielinski, T. (Creator) & Millar, A. (Creator), Zenodo, 9 Apr 2020

  DOI: 10.5281/zenodo.3746486, https://github.com/SynthSys/pyOmeroUpload/releases/tag/v5.6.2_2.0.0

  Dataset

• A Decade of Progress: Open Data Practices in Bioscience at the University of Edinburgh

  Deeb, H. (Creator), Creasey, S. (Creator), de Ugarte, D. L. (Creator), Strevens, G. (Creator), Usman, T. (Creator), Yun Wong, H. (Creator), Kutzer, M. A. M. (Creator), Wilson, E. (Creator), Zieliński, T. (Creator) & Millar, A. J. (Creator), Zenodo, 25 Nov 2024

  DOI: 10.5281/zenodo.14169649, https://doi.org/10.5281/zenodo.10636797

  Dataset

• Absolute units in Arabidopsis clock models up to U2020.3

  Urquiza Garcia, U. (Creator) & Millar, A. (Creator), Edinburgh DataShare, 6 Aug 2021

  DOI: 10.7488/ds/3109, https://doi.org/10.1101/2021.03.18.436071 and 2 more links, https://doi.org/10.1093/insilicoplants/diab022, https://zenodo.org/record/5458044 (show fewer)

  Dataset

• Processed proteomic and phosphoproteomic timeseries from Ostreococcus tauri, with Gene Ontology enrichment, from "A phospho-dawn of protein modification anticipates light onset in the picoeukaryote O. tauri"

  Hindle, M. M. (Creator), Martin, S. F. (Creator), Noordally, Z. (Creator), Millar, A. (Creator), Simpson, I. (Creator) & Le Bihan, T. (Creator), Zenodo, 16 Mar 2023

  DOI: 10.5281/zenodo.7742118, https://dx.doi.org/10.6019/PXD001735 and 2 more links, https://dx.doi.org/10.6019/PXD001734, https://dx.doi.org/10.6019/PXD002909 (show fewer)

  Dataset

• Circadian rhythms study of the unicellular algae Ostreococcus tauri by shotgun proteomics (LD global proteomics)

  Hindle, M. M. (Creator), Martin, S. F. (Creator), Noordally, Z. (Creator), Millar, A. (Creator), Simpson, I. (Creator) & Le Bihan, T. (Creator), ProteomeXchange, 1 Dec 2022

  DOI: 10.6019/PXD001735, https://doi.org/10.5281/zenodo.7742118 and 2 more links, https://dx.doi.org/10.6019/PXD001734, https://dx.doi.org/10.6019/PXD002909 (show fewer)

  Dataset

• Circadian rhythms study of the unicellular algae Ostreococcus tauri by shotgun proteomics (LD phosphoproteomics)

  Hindle, M. M. (Creator), Martin, S. F. (Creator), Noordally, Z. (Creator), Millar, A. (Creator), Simpson, I. (Creator) & Le Bihan, T. (Creator), ProteomeXchange, 1 Dec 2022

  DOI: 10.6019/PXD001734, https://doi.org/10.5281/zenodo.7742118 and 2 more links, https://dx.doi.org/10.6019/PXD001735, https://dx.doi.org/10.6019/PXD002909 (show fewer)

  Dataset

• Circadian rhythms study of the unicellular algae Ostreococcus tauri by shotgun proteomics (Dark adaptation, global proteomics)

  Hindle, M. M. (Creator), Martin, S. F. (Creator), Noordally, Z. (Creator), Millar, A. (Creator), Simpson, I. (Creator) & Le Bihan, T. (Creator), ProteomeXchange, 1 Dec 2022

  DOI: 10.6019/PXD002909, https://dx.doi.org/10.6019/PXD001735 and 2 more links, https://dx.doi.org/10.6019/PXD001734, https://doi.org/10.5281/zenodo.7742118 (show fewer)

  Dataset

• Data curation materials in "Daily life in the Open Biologist's second job, as a Data Curator"

  Scorza, L. (Creator), Zielinski, T. (Project Manager), Millar, A. (Project Leader) & Zieliński, T. (Creator), Zenodo, 14 Aug 2024

  DOI: 10.5281/zenodo.13321937, https://zenodo.org/records/13321937

  Dataset

• Prediction and analysis of phenotypes in the Arabidopsis clock mutant prr7prr9 using the Framework Model v2 (FMv2)

  Chew, Y. H. (Creator), Seaton, D. (Creator), Mengin, V. (Creator), Flis, A. (Creator), Mugford, S. T. (Creator), George, G. M. (Creator), Moulin, M. (Creator), Hume, A. (Creator), Zeeman, S. C. (Creator), Fitzpatrick, T. B. (Creator), Smith, A. M. (Creator), Millar, A. (Creator) & Stitt, M. (Creator), Edinburgh DataShare, 17 May 2022

  DOI: 10.7488/ds/3453, https://doi.org/10.1101/105437 and one more link, https://zenodo.org/records/6536645 (show fewer)

  Dataset