Datasets
- 26 results
Search results
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Algal phospho- and protein rhythms mass spec data
Imrie, L. (Creator), Millar, A. (Creator), Noordally, Z. (Creator), Hindle, M. (Creator), Martin, S. (Creator), Seaton, D. (Creator), Simpson, I. (Creator), Le Bihan, T. (Creator), Imrie, L. (Data Manager) & Imrie, L. (Owner), Edinburgh DataVault, 2019
DOI: 10.7488/8a96caae-db2a-42c5-9361-e366faa26e3f, https://www.ebi.ac.uk/pride/archive/
Dataset
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Plant Systems Modelling database
Millar, A. (Creator), University of Edinburgh, 2009
https://fairdomhub.org/projects/129 and one more link, http://www.plasmo.ed.ac.uk (show fewer)
Dataset
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Spatiotemporal clock patterns in the leaf blade
Millar, A. (Creator), Wenden, B. (Creator) & Hodge, S. (Creator), Edinburgh DataShare, 4 May 2021
DOI: 10.7488/ds/3030, https://www.pnas.org/content/early/2012/04/09/1118814109
Dataset
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The reduced kinome of Ostreococcus tauri: core eukaryotic signalling components in a tractable model species
Hindle, M. (Creator) & Millar, A. (Creator), Edinburgh DataShare, 2014
DOI: 10.7488/ds/72
Dataset
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Data Sharing Practices in the MRC Circadian Mental Health Network.
Deeb, H. (Researcher), Zielinski, T. (Project Manager) & Millar, A. (Project Leader), Zenodo, 6 Sept 2024
Dataset
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Circadian expression of genes: modelling the Arabidopsis circadian clock
Edwards, K. D. (Creator) & Millar, A. (Creator), University of Edinburgh, 2005
http://affymetrix.arabidopsis.info/narrays/experimentpage.pl?experimentid=108 and one more link, http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5612 (show fewer)
Dataset
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Circadian gene expression under different light treatments by transcriptome profiling on microarrays
Edwards, K. D. (Creator) & Millar, A. (Creator), University of Edinburgh, 2007
http://affymetrix.arabidopsis.info/narrays/experimentpage.pl?experimentid=196
Dataset
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Data files and analysis scripts for Seaton et al. "Photoperiodic control of the Arabidopsis proteome reveals a translational coincidence mechanism", bioRxiv 2017, Mol. Syst. Biol. 2018
Seaton, D. D. (Creator) & Millar, A. (Creator), Edinburgh DataShare, 21 Feb 2018
DOI: 10.7488/ds/2309, https://fairdomhub.org/investigations/163
Dataset
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Absolute units for proteins in Arabidopsis clock models up to U2020.5
Urquiza Garcia, U. (Creator), Halliday, K. (Supervisor) & Millar, A. (Supervisor), Zenodo, 19 Dec 2024
Dataset
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Circadian Clock Experiments: rhythmic transcriptome of dark-grown, temperature-entrained seedlings
Hall, A. (Creator) & Millar, A. (Creator), University of Edinburgh, 2005
http://affymetrix.arabidopsis.info/narrays/experimentpage.pl?experimentid=2
Dataset
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Eleven partial DNA sequences of orthologues of the flowering time gene FLC in cultivars of Brassica oleracea.
Salathia, N. S. (Creator), Millar, A. (Creator) & King, G. J. (Creator), University of Edinburgh, 2003
http://www.ncbi.nlm.nih.gov/nuccore/EF158117 and 10 more links, http://www.ncbi.nlm.nih.gov/nuccore/EF158118, http://www.ncbi.nlm.nih.gov/nuccore/EF158119, http://www.ncbi.nlm.nih.gov/nuccore/EF158120, http://www.ncbi.nlm.nih.gov/nuccore/EF158121, http://www.ncbi.nlm.nih.gov/nuccore/EF158122, http://www.ncbi.nlm.nih.gov/nuccore/EF158123, http://www.ncbi.nlm.nih.gov/nuccore/EF158124, http://www.ncbi.nlm.nih.gov/nuccore/EF158125, http://www.ncbi.nlm.nih.gov/nuccore/EF158126, http://www.ncbi.nlm.nih.gov/nuccore/EF158127 (show fewer)
Dataset
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Identifying targets of FLC at 27oC by expression profiling
Edwards, K. D. (Creator) & Millar, A. (Creator), University of Edinburgh, 2006
Dataset
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Data sets for Millar et al. bioRxiv 2015
Millar, A. (Creator), Carrington, J. T. (Creator), Tee, W. V. (Creator) & Hodge, S. (Creator), bioRxiv, at Cold Spring Harbor Laboratory, 17 Dec 2015
DOI: 10.1101/034629, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=2841 and 21 more links, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13630953803730, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13618784212904, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13619780272531, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13615365050841, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13661271159675, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13650039169340, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13644021710933, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13631095320942, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13639713266200, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=12729899933214, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=12730739255199, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=12730752301671, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=12730527312073, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13631017726171, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13615471409903, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13624982192162 , https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13649886952409, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13618962781900, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13643892291642, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13637871113032, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13649842953637 (show fewer)
Dataset
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Data, Code and Models for Flis et al. RS Open Biology 2015
Millar, A. (Creator), Zielinski, T. (Data Manager), Flis, A. (Creator), Mengin, V. (Creator), Stitt, M. (Creator), Fernández, A. P. (Creator), McWatters, H. G. (Creator) & Halliday, K. (Creator), The Royal Society, 2015
https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=12820611467827 and 30 more links, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=12820610743262, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=12820611319996, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=12820611188065, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=12820611587928, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=12820606741450, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=12820610913763, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13228354371807, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=12962296599986, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=12962294335805, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=2841, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=2842, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=2843 , https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13228298288040, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13227619871305, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13228357183121, http://sourceforge.net/projects/biodare/, http://www.biodare.ed.ac.uk, http://sourceforge.net/projects/sbsi/, http://www.sbsi.ed.ac.uk, http://www.plasmo.ed.ac.uk/plasmo/models/model.shtml?accession=PLM_71&version=1, http://www.plasmo.ed.ac.uk/plasmo/models/model.shtml?accession=PLM_71&version=2, http://www.plasmo.ed.ac.uk/plasmo/models/model.shtml?accession=PLM_1041&version=1, http://www.plasmo.ed.ac.uk/plasmo/models/model.shtml?accession=PLM_1042&version=1, http://www.plasmo.ed.ac.uk/plasmo/models/model.shtml?accession=PLM_1043&version=1, http://www.plasmo.ed.ac.uk/plasmo/models/model.shtml?accession=PLM_1044&version=1, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13227622661196, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13228357183121, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=3488, https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=3492, http://www.plasmo.ed.ac.uk/plasmo/models/model.shtml?accession=PLM_1045&version=1 (show fewer)
Dataset
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Timeseries used in Zielinski et al. Strengths and Limitations of Period Estimation Methods
Zielinski, T. (Creator) & Millar, A. (Creator), Edinburgh DataShare, 22 Oct 2019
DOI: 10.7488/ds/2636, https://europepmc.org/abstract/MED/24809473 and one more link, https://doi.org/10.1371/journal.pone.0096462 (show fewer)
Dataset
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Proteomic data from "Sample preparation for phosphoproteomic analysis of circadian time series in Arabidopsis thaliana"
Krahmer, J. (Creator), Martin, S. (Creator), Hindle, M. (Creator), Le Bihan, T. (Creator) & Millar, A. (Creator), PRIDE database hosted by European Bioinformatics Institute, EBI, 2016
DOI: 10.7488/ba4de74b-7d98-48c8-b587-c43f44dc37c9, http://www.ebi.ac.uk/pride/archive/projects/PXD001134
Dataset
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PyOmeroUpload: A Python toolkit for uploading images and metadata to OMERO
Hay, J. (Creator), Troup, E. (Creator), Clark, I. B. N. (Creator), Pietsch, J. (Creator), Zielinski, T. (Creator) & Millar, A. (Creator), Zenodo, 9 Apr 2020
DOI: 10.5281/zenodo.3746486, https://github.com/SynthSys/pyOmeroUpload/releases/tag/v5.6.2_2.0.0
Dataset
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A Decade of Progress: Open Data Practices in Bioscience at the University of Edinburgh
Deeb, H. (Creator), Creasey, S. (Creator), de Ugarte, D. L. (Creator), Strevens, G. (Creator), Usman, T. (Creator), Yun Wong, H. (Creator), Kutzer, M. A. M. (Creator), Wilson, E. (Creator), Zieliński, T. (Creator) & Millar, A. J. (Creator), Zenodo, 25 Nov 2024
DOI: 10.5281/zenodo.14169649, https://doi.org/10.5281/zenodo.10636797
Dataset
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Absolute units in Arabidopsis clock models up to U2020.3
Urquiza Garcia, U. (Creator) & Millar, A. (Creator), Edinburgh DataShare, 6 Aug 2021
DOI: 10.7488/ds/3109, https://doi.org/10.1101/2021.03.18.436071 and 2 more links, https://doi.org/10.1093/insilicoplants/diab022, https://zenodo.org/record/5458044 (show fewer)
Dataset
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Processed proteomic and phosphoproteomic timeseries from Ostreococcus tauri, with Gene Ontology enrichment, from "A phospho-dawn of protein modification anticipates light onset in the picoeukaryote O. tauri"
Hindle, M. M. (Creator), Martin, S. F. (Creator), Noordally, Z. (Creator), Millar, A. (Creator), Simpson, I. (Creator) & Le Bihan, T. (Creator), Zenodo, 16 Mar 2023
DOI: 10.5281/zenodo.7742118, https://dx.doi.org/10.6019/PXD001735 and 2 more links, https://dx.doi.org/10.6019/PXD001734, https://dx.doi.org/10.6019/PXD002909 (show fewer)
Dataset
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Circadian rhythms study of the unicellular algae Ostreococcus tauri by shotgun proteomics (LD global proteomics)
Hindle, M. M. (Creator), Martin, S. F. (Creator), Noordally, Z. (Creator), Millar, A. (Creator), Simpson, I. (Creator) & Le Bihan, T. (Creator), ProteomeXchange, 1 Dec 2022
DOI: 10.6019/PXD001735, https://doi.org/10.5281/zenodo.7742118 and 2 more links, https://dx.doi.org/10.6019/PXD001734, https://dx.doi.org/10.6019/PXD002909 (show fewer)
Dataset
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Circadian rhythms study of the unicellular algae Ostreococcus tauri by shotgun proteomics (LD phosphoproteomics)
Hindle, M. M. (Creator), Martin, S. F. (Creator), Noordally, Z. (Creator), Millar, A. (Creator), Simpson, I. (Creator) & Le Bihan, T. (Creator), ProteomeXchange, 1 Dec 2022
DOI: 10.6019/PXD001734, https://doi.org/10.5281/zenodo.7742118 and 2 more links, https://dx.doi.org/10.6019/PXD001735, https://dx.doi.org/10.6019/PXD002909 (show fewer)
Dataset
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Circadian rhythms study of the unicellular algae Ostreococcus tauri by shotgun proteomics (Dark adaptation, global proteomics)
Hindle, M. M. (Creator), Martin, S. F. (Creator), Noordally, Z. (Creator), Millar, A. (Creator), Simpson, I. (Creator) & Le Bihan, T. (Creator), ProteomeXchange, 1 Dec 2022
DOI: 10.6019/PXD002909, https://dx.doi.org/10.6019/PXD001735 and 2 more links, https://dx.doi.org/10.6019/PXD001734, https://doi.org/10.5281/zenodo.7742118 (show fewer)
Dataset
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Data curation materials in "Daily life in the Open Biologist's second job, as a Data Curator"
Scorza, L. (Creator), Zielinski, T. (Project Manager), Millar, A. (Project Leader) & Zieliński, T. (Creator), Zenodo, 14 Aug 2024
DOI: 10.5281/zenodo.13321937, https://zenodo.org/records/13321937
Dataset
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Prediction and analysis of phenotypes in the Arabidopsis clock mutant prr7prr9 using the Framework Model v2 (FMv2)
Chew, Y. H. (Creator), Seaton, D. (Creator), Mengin, V. (Creator), Flis, A. (Creator), Mugford, S. T. (Creator), George, G. M. (Creator), Moulin, M. (Creator), Hume, A. (Creator), Zeeman, S. C. (Creator), Fitzpatrick, T. B. (Creator), Smith, A. M. (Creator), Millar, A. (Creator) & Stitt, M. (Creator), Edinburgh DataShare, 17 May 2022
DOI: 10.7488/ds/3453, https://doi.org/10.1101/105437 and one more link, https://zenodo.org/records/6536645 (show fewer)
Dataset