Andrew Millar

Search results

• 2022

  SARS-CoV-2 monitoring in Scottish wastewater: Variant Detection, FAIR data Outputs and Lessons Learned

  Gilbert, N., Fletcher, I., Lyall, C., Scorza, L. C. T., Zielinski, T., Baby, S. V. & Millar, A. J., 23 Nov 2022, CREW. 47 p.

  Research output: Book/Report › Commissioned report

  Open Access

• SARS-CoV-2 RNA levels in Scotland’s wastewater

  Scorza, L., Cameron, G. J., Murray Williams, R., Findlay, D., Bolland, J., Cerghizan, B., Campbell, K., Thomson, D., Corbishley, A., Gally, D., Fitzgerald, S., Low, A., McAteer, S., Roberts, A., Fang, Z., Mayer, C. D., Frantsuzova, A., Baby, S. V., Zielinski, T. & Millar, A. J., 18 Nov 2022, In: Scientific Data. 9, 713, 9 p., 713.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Waste Water 100%
  • Severe Acute Respiratory Syndrome 96%
  • RNA 74%
  • Wastewater 65%
  • Scotland 55%

• The Arabidopsis Framework Model version 2 predicts the organism-level effects of circadian clock gene mis-regulation

  Chew, Y. H., Seaton, D. D., Mengin, V., Flis, A., Mugford, S. T., George, G. M., Moulin, M., Hume, A., Zeeman, S. C., Fitzpatrick, T. B., Smith, A. M., Stitt, M. & Millar, A. J., 30 May 2022, In: In Silico Plants. 4, 2, 15 p., diac010.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Arabidopsis 100%
  • Metabolism 65%
  • Circadian Clocks 64%
  • Phenotype 62%
  • circadian clocks 58%

• Not going to waste - preserving Scotland's COVID-19 wastewater data

  Scorza, L., Zielinski, T., Baby, S. V., Cameron, G. & Millar, A. J., 27 May 2022.

  Research output: Contribution to conference › Poster

  • wastewater 100%
  • severe acute respiratory syndrome 63%
  • program 21%
  • monitoring 21%
  • disease prevalence 20%

• SynBio2Easy – a biologist-friendly tool for batch operations on SBOL designs with Excel inputs

  Zielinski, T., Hay, J., Romanowski, A., Nenninger, A., McCormick, A. J. & Millar, A. J., 26 Jan 2022, In: Synthetic Biology. 7, 1, 9 p., ysac002.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Synthetic biology 100%
  • Foundry 94%
  • Synthetic Biology 93%
  • synthetic biology 87%
  • Ecosystem 80%

• The circadian clock gene circuit controls protein and phosphoprotein rhythms in Arabidopsis thaliana

  Krahmer, J., Hindle, M., Perby, L. K., Mogensen, H. K., Nielsen, T. H., Halliday, K. J., VanOoijen, G., LeBihan, T. & Millar, A. J., 1 Jan 2022, In: Molecular & Cellular Proteomics (MCP). 21, 1, 20 p., 100172.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Arabidopsis 100%
  • Circadian Clocks 95%
  • Phosphoproteins 90%
  • Gene Regulatory Networks 83%
  • Protein 31%
• 2021

  Period estimation and rhythm detection in timeseries data using BioDare2, the free, online, community resource

  Zieliński, T., Hay, J. & Millar, A. J., 22 Oct 2021, (E-pub ahead of print) Plant Circadian Networks: Methods and Protocols. Springer, Vol. 2398. p. 15-32 18 p. (Methods in molecular biology (Clifton, N.J.)).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

  Open Access

  File

  • Information Dissemination 100%
  • Data Analysis 63%

• Testing the inferred transcription rates of a dynamic, gene network model in absolute units

  Urquiza-García, U. & Millar, A. J., 5 Aug 2021, In: In Silico Plants. diab022.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Gene Networks 100%
  • Transcription 91%
  • Network Model 77%
  • gene regulatory networks 75%
  • Gene Regulatory Networks 73%
• 2020

  PyOmeroUpload: A Python toolkit for uploading images and metadata to OMERO

  Hay, J., Troup, E., Clark, I., Pietsch, J., Zielinski, T. & Millar, A. J., 18 May 2020, In: Wellcome Open Research .

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Metadata 100%
  • Boidae 98%
  • Flexibility 54%
  • Microscopy 28%
  • Publications 28%
• 2019

  pyNMMSO, a python implementation of the Niching Migratory Multi-Swarm Optimiser

  Hume, A., Wood, C. & Millar, A. J., 24 Dec 2019

  Research output: Non-textual form › Software

  • documentation 100%

• Nurturing cross-disciplinary research: Institutional logics, hybrid spaces and meta-organization at a research university

  Freeman, P. L., Marr, I., Millar, A. J. & Kitagawa, F., 9 Dec 2019, SocArXiv.

  Research output: Working paper

  Open Access

  File

  • organization 100%
  • university 78%
  • research project 62%
  • life cycle 28%
  • stakeholder 19%

• Nurturing project organizations: A mode 2 mission for the university?

  Freeman, P. L., Marr, I., Millar, A. J. & Kitagawa, F., 9 Dec 2019, SocArXiv.

  Research output: Working paper

  Open Access

  File

  • project organization 100%
  • university 31%
  • management 26%
  • leadership 17%
  • staff 16%

• The grant is dead, long live the data - migration as a pragmatic exit strategy for research data preservation [version 2; peer review: 2 approved]

  Zielinski, T., Hay, J. & Millar, A. J., 23 Sep 2019, In: Wellcome Open Research .

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Data Management 100%
  • Peer Review 93%
  • Organized Financing 88%
  • Biological Property 72%
  • Safety 63%

• Circadian protein regulation in the green lineage II. The clock gene circuit controls a phospho-dawn in Arabidopsis thaliana

  Krahmer, J., Hindle, M., Perby, L. K., Nielsen, T. H., Van Ooijen, G., Halliday, K. J., Bihan, T. L. & Millar, A. J., 8 Sep 2019, bioRxiv, at Cold Spring Harbor Laboratory.

  Research output: Working paper

  Open Access

  • Arabidopsis 100%
  • Gene Regulatory Networks 83%
  • Proteins 28%
  • Plant Genes 20%
  • Phosphofructokinase-2 20%

• Expanding the bioluminescent reporter toolkit for plant science with NanoLUC

  Urquiza-garcía, U. & Millar, A. J., 8 Jul 2019, In: Plant Methods. 15, 1, 68.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • luciferase 100%
  • Firefly Luciferases 82%
  • transcription factors 27%
  • proteins 24%
  • signal-to-noise ratio 24%

• The grant is dead, long live the data - migration as a pragmatic exit strategy for research data preservation [version 1; peer review: 2 approved].

  Zielinski, T., Hay, J. & Millar, A. J., 2 Jul 2019, In: Wellcome Open Research . 4, 104.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Data Management 100%
  • Peer Review 93%
  • Organized Financing 88%
  • Biological Property 72%
  • Safety 63%

• Better research by efficient sharing: Evaluation of free management platforms for synthetic biology designs

  Urquiza-garcía, U., Zieliński, T. & Millar, A. J., 20 Jun 2019, (E-pub ahead of print) In: Synthetic Biology. 4, 1, ysz016.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Synthetic biology 100%
  • Synthetic Biology 93%
  • synthetic biology 87%
  • Cataloging 20%
  • Biological Sciences 19%

• An explanatory model of temperature influence on flowering through whole-plant accumulation of FT in Arabidopsis thaliana  

  Kinmonth-Schultz, H. A., MacEwen, M. J. S., Seaton, D. D., Millar, A. J., Imaizumi, T. & Kim, S-H., 15 May 2019, In: In Silico Plants. 1, 1, diz006.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Arabidopsis Thaliana 100%
  • Flowering 98%
  • Arabidopsis 73%
  • Leaf Like Crystal 47%
  • Arabidopsis thaliana 44%

• Practical steps to digital organism models, from laboratory model species to ‘Crops in silico’

  Millar, A. J., Urquiza Garcia, J., Freeman, P., Hume, A., Plotkin, G. D., Sorokina, O., Zardilis, A. & Zielinski, T., 15 Apr 2019, In: Journal of Experimental Botany. 70, 9, p. 2403–2418 16 p., JEXBOT/2018/235879.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  File

  • Computer Simulation 100%
  • systems biology 78%
  • Systems Biology 76%
  • organisms 60%
  • crops 56%

• A multi-model Framework for the Arabidopsis life cycle

  Zardilis, A., Hume, A. & Millar, A., 19 Feb 2019, In: Journal of Experimental Botany. 70, 9, p. 2463–2477 16 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Arabidopsis 100%
  • Life Cycle Stages 82%
  • life cycle (organisms) 64%
  • Growth 38%
  • Plant Dormancy 33%

• Multiple circadian clock outputs regulate diel turnover of carbon and nitrogen reserves

  Flis, A., Mengin, V., Ivakov, A. A., Mugford, S. T., Hubberten, H-M., Encke, B., Krohn, N., Höhne, M., Feil, R., Hoefgen, R., Lunn, J. E., Millar, A. J., Smith, A. M., Sulpice, R. & Stitt, M., 1 Feb 2019, In: Plant, Cell and Environment. 42, 2, p. 549-573 25 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Circadian Clocks 100%
  • Starch 91%
  • circadian clocks 89%
  • Carbon 79%
  • Nitrogen 79%

• Time-resolved Interaction Proteomics of the GIGANTEA Protein Under Diurnal Cycles in Arabidopsis

  Krahmer, J., Goralogia, G. S., Kubota, A., Zardilis, A., Johnson, R. S., Song, Y. H., MacCoss, M. J., LeBihan, T., Halliday, K. J., Imaizumi, T. & Millar, A. J., Feb 2019, In: FEBS Letters. 593, 3, 20 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Arabidopsis 100%
  • Proteomics 70%
  • Tumor Necrosis Factor Ligand Superfamily Member 14 39%
  • Kelch Repeat 33%
  • Protein 31%
• 2018

  Molecular basis of flowering under natural long-day conditions in Arabidopsis

  Song, Y. H., Kubota, A., Kwon, M. S., Covington, M. F., Lee, N., Taagen, E. R., Laboy Cintrón, D., Hwang, D. Y., Akiyama, R., Hodge, S. K., Huang, H., Nguyen, N. H., Nusinow, D. A., Millar, A. J., Shimizu, K. K. & Imaizumi, T., 1 Oct 2018, In: Nature Plants. 4, 10, p. 824-835 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Arabidopsis 100%
  • flowering 93%
  • flowering time 82%
  • Florigen 62%
  • florigen 58%

• A multi-model Framework for the Arabidopsis life cycle

  Zardilis, A., Hume, A. & Millar, A., 29 Jun 2018, Cold Spring Harbor: bioRxiv, at Cold Spring Harbor Laboratory.

  Research output: Working paper

  Open Access

  • life cycle (organisms) 100%
  • Arabidopsis 87%
  • ecophysiology 36%
  • plant growth 31%
  • phenology 27%

• Circadian clock components control daily growth activities by modulating cytokinin levels and cell division-associated gene expression in Populus trees

  Edwards, K. D., Takata, N., Johansson, M., Jurca, M., Novák, O., Hényková, E., Liverani, S., Kozarewa, I., Strnad, M., Millar, A. J., Ljung, K. & Eriksson, M. E., 15 Apr 2018, In: Plant, Cell and Environment. 15 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Populus 100%
  • Cytokinins 99%
  • control components 84%
  • Circadian Clocks 71%
  • circadian clocks 64%

• Chromar, a Rule-based Language of Parameterised Objects

  Honorato-Zimmer, R., Millar, A. J., Plotkin, G. D. & Zardilis, A., 10 Apr 2018, In: Electronic Notes in Theoretical Computer Science. 335, p. 49-66 18 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Language 100%
  • Object 79%
  • Computer programming languages 62%
  • Rate Equations 51%
  • Programming Languages 42%

• Circadian protein regulation in the green lineage I. A phospho-dawn anticipates light onset before proteins peak in daytime

  Noordally, Z. B., Hindle, M., Martin, S., Seaton, D. D., Simpson, T., Le Bihan, T. & Millar, A., 4 Apr 2018, bioRxiv, at Cold Spring Harbor Laboratory, 35 p.

  Research output: Working paper

  Open Access

  File

  • Light 100%
  • Photoperiod 76%
  • Proteome 63%
  • Proteins 52%
  • Phosphoproteins 47%

• Photoperiodic control of the Arabidopsis proteome reveals a translational coincidence mechanism

  Seaton, D. D., Graf, A., Baerenfaller, K., Stitt, M., Millar, A. J. & Gruissem, W., 1 Mar 2018, In: Molecular Systems Biology. 14, 3, p. e7962 19 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Photoperiod 100%
  • Arabidopsis 95%
  • Coincidence 52%
  • Proteome 51%
  • Protein 51%

• Optimisation of plant traits using optimal control of environmental variables

  Zardilis, A., Menolascina, F. & Millar, A., 2018, (Unpublished) Proceedings of the European Control Conference 2019.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• 2017

  Guidelines for Genome-Scale Analysis of Biological Rhythms

  Hughes, M. E., Abruzzi, K. C., Allada, R., Anafi, R., Arpat, A. B., Asher, G., Baldi, P., de Bekker, C., Bell-Pedersen, D., Blau, J., Brown, S., Ceriani, M. F., Chen, Z., Chiu, J. C., Cox, J., Crowell, A. M., DeBruyne, J. P., Dijk, D-J., DiTacchio, L., Doyle, F. J., & 73 othersDuffield, G. E., Dunlap, J. C., Eckel-Mahan, K., Esser, K. A., FitzGerald, G. A., Forger, D. B., Francey, L. J., Fu, Y-H., Gachon, F., Gatfield, D., de Goede, P., Golden, S. S., Green, C., Harer, J., Harmer, S., Haspel, J., Hastings, M. H., Herzel, H., Herzog, E. D., Hoffmann, C., Hong, C., Hughey, J. J., Hurley, J. M., de la Iglesia, H. O., Johnson, C., Kay, S. A., Koike, N., Kornacker, K., Kramer, A., Lamia, K., Leise, T., Lewis, S. A., Li, J., Li, X., Liu, A. C., Loros, J. J., Martino, T. A., Menet, J. S., Merrow, M., Millar, A. J., Mockler, T., Naef, F., Nagoshi, E., Nitabach, M. N., Olmedo, M., Nusinow, D. A., Ptáček, L. J., Rand, D., Reddy, A. B., Robles, M. S., Roenneberg, T., Rosbash, M., Ruben, M. D., Rund, S. S. C., Sancar, A., Sassone-Corsi, P., Sehgal, A., Sherrill-Mix, S., Skene, D. J., Storch, K-F., Takahashi, J. S., Ueda, H. R., Wang, H., Weitz, C., Westermark, P. O., Wijnen, H., Xu, Y., Wu, G., Yoo, S-H., Young, M., Zhang, E. E., Zielinski, T. & Hogenesch, J. B., 1 Oct 2017, In: Journal of biological rhythms. 32, 5, p. 380-393 14 p., 748730417728663.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Periodicity 100%
  • Genome 60%
  • Guidelines 57%
  • Synthetic Biology 31%
  • Big Data 30%

• Photoperiodic control of the Arabidopsis proteome reveals a translational coincidence mechanism

  Seaton, D., Graf, A., Baerenfaller, K., Stitt, M., Millar, A. & Gruissem, W., 29 Aug 2017, bioRxiv, at Cold Spring Harbor Laboratory, 43 p.

  Research output: Working paper

  • proteome 100%
  • photoperiod 83%
  • Arabidopsis 76%
  • translation (genetics) 44%
  • proteins 34%

• Time-resolved Interaction Proteomics of the Putative Scaffold Protein GIGANTEA in Arabidopsis thaliana

  Krahmer, J., Goralogia, G., Kubota, A., Johnson, R. S., Song, Y. H., Halliday, K., MacCoss, M. J., LeBihan, T., Imaizumi, T. & Millar, A., 28 Aug 2017, bioRxiv, at Cold Spring Harbor Laboratory, 58 p.

  Research output: Working paper

  • scaffolding proteins 100%
  • proteomics 65%
  • Arabidopsis thaliana 58%
  • flowering 26%
  • proteins 24%

• Chromar, a language of parameterised objects

  Honorato Zimmer, R., Millar, A. J., Plotkin, G. D. & Zardilis, A., 8 Aug 2017, (E-pub ahead of print) In: Theoretical Computer Science. 25 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Language 100%
  • Object 92%
  • Modeling Language 59%
  • Haskell 55%
  • Modeling languages 43%

• BioDare2, online data analysis resource

  Zielinski, T. & Millar, A., Jun 2017

  Research output: Non-textual form › Software

  Open Access

• Crops In Silico: Generating Virtual Crops Using an Integrative and Multi-scale Modeling Platform

  Marshall-colon, A., Long, S. P., Allen, D. K., Allen, G., Beard, D. A., Benes, B., Von Caemmerer, S., Christensen, A. J., Cox, D. J., Hart, J. C., Hirst, P. M., Kannan, K., Katz, D. S., Lynch, J. P., Millar, A. J., Panneerselvam, B., Price, N. D., Prusinkiewicz, P., Raila, D., Shekar, R. G., & 9 othersShrivastava, S., Shukla, D., Srinivasan, V., Stitt, M., Turk, M. J., Voit, E. O., Wang, Y., Yin, X. & Zhu, X., 15 May 2017, In: Frontiers in plant science. 8, 786.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • crops 100%
  • engineering 48%
  • ecosystems 40%
  • climate models 37%
  • plant biology 32%

• Linking circadian time to growth rate quantitatively via carbon metabolism

  Chew, Y. H., Seaton, D., Mengin, V., Flis, A., Mugford, S. T., Smith, A. M., Stitt, M. & Millar, A., 6 Feb 2017, bioRxiv, at Cold Spring Harbor Laboratory.

  Research output: Working paper

  Open Access

  File

  • carbon metabolism 100%
  • phenotype 57%
  • metabolism 38%
  • organisms 37%
  • starch 31%

• Valuing the project: A knowledge-action response to network governance in collaborative research

  Freeman, P. & Millar, A., Jan 2017, In: Public Money & Management. 37, 1, p. 23-30

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Network Governance 100%
  • Collaborative Research 88%
  • Public Value 70%
  • governance 46%
  • Governance 33%
• 2016

  Organ specificity in the plant circadian system is explained by different light inputs to the shoot and root clocks

  Bordage, S., Sullivan, S., Laird, J., Millar, A. J. & Nimmo, H. G., 1 Oct 2016, In: New Phytologist. 212, 1, p. 136–149 14 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Organ Specificity 100%
  • Light 55%
  • shoots 49%
  • circadian clocks 35%
  • Arabidopsis 34%

• Chromar, a rule-based language of parameterised objects

  Honorato Zimmer, R., Millar, A., Plotkin, G. & Zardilis, A., 7 Sep 2016, The Seventh International Workshop on Static Analysis and Systems Biology (SASB 2016). 14 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  File

  • Computer programming languages 100%
  • Reaction rates 62%
  • Modeling languages 60%
  • Knowledge representation 59%
  • Molecules 53%

• Photoperiod-dependent changes in the phase of core clock transcripts and global transcriptional outputs at dawn and dusk in Arabidopsis

  Flis, A., Sulpice, R., Seaton, D. D., Ivakov, A. A., Liput, M., Abel, C., Millar, A. J. & Stitt, M., 4 Aug 2016, In: Plant, Cell and Environment. 39, 9, p. 1955-1981

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Arabidopsis 100%
  • Photoperiod 97%
  • phase transition 86%
  • photoperiod 61%
  • Starch 28%

• qpMerge: Merging different peptide isoforms using a motif centric strategy

  Hindle, M. M., Le Bihan, T., Krahmer, J., Martin, S. F., Noordally, Z. B., Simpson, T. I. & Millar, A. J., 5 Apr 2016, bioRxiv, at Cold Spring Harbor Laboratory, 9 p.

  Research output: Working paper

  • redundancy 100%
  • peptides 88%
  • galaxies 58%
  • acetylation 45%
  • phosphorylation 37%

• The intracellular dynamics of circadian clocks reach for the light of ecology and evolution

  Millar, A., Apr 2016, In: Annual Review of Plant Biology. 67, p. 595-618

  Research output: Contribution to journal › Literature review › peer-review

  Open Access

  • Circadian Clocks 100%
  • Ecology 96%
  • circadian clocks 89%
  • ecology 59%
  • Biological Clocks 58%

• Practical evaluation of SEEK and OpenBIS for biological data management in SynthSys; second report

  Troup, E., Tomlinson, K., D'Mellow, K., Richards, O., Millar, A. & Zielinski, T., 11 Mar 2016, University of Edinburgh. 13 p.

  Research output: Book/Report › Other report

  Open Access

  File

  • Information management 100%
  • Information services 30%

• Multi-scale modelling to synergise plant systems biology and crop science

  Chew, Y. H., Seaton, D. & Millar, A., 26 Feb 2016, In: Field crops research. 202

  Research output: Contribution to journal › Literature review › peer-review

  Open Access

  File

  • systems biology 100%
  • crop 58%
  • science 52%
  • crop improvement 46%
  • crops 43%
• 2015

  Changing planetary rotation rescues the biological clock mutant lhy cca1 of Arabidopsis thaliana

  Millar, A., Carrington, J. T., Tee, W. V. & Hodge, S., 17 Dec 2015, bioRxiv, at Cold Spring Harbor Laboratory.

  Research output: Working paper

  File

  • biological clocks 100%
  • Arabidopsis thaliana 56%
  • mutants 42%
  • photoperiod 26%
  • genes 11%

• Plants in silico: Why, why now and what? --- An integrative platform for plant systems biology research

  Zhu, X-G., Lynch, J. P., LeBauer, D. S., Millar, A. J., Stitt, M. & Long, S. P., 2 Nov 2015, (E-pub ahead of print) In: Plant, Cell and Environment. 39 , 5, p. 1049–1057

  Research output: Contribution to journal › Literature review › peer-review

  Open Access

  File

  • systems biology 100%
  • Systems Biology 97%
  • Computer Simulation 76%
  • Plant Organogenesis 22%
  • Ecosystem 22%

• Low-temperature-specific effects of PHYTOCHROME C on the circadian clock in Arabidopsis suggest that PHYC underlies natural variation in biological timing

  Edwards, K. D., Guerineau, F., Devlin, P. & Millar, A., Nov 2015, bioRxiv, at Cold Spring Harbor Laboratory.

  Research output: Working paper

  Open Access

  File

  • circadian clocks 100%
  • quantitative trait loci 77%
  • Arabidopsis 66%
  • temperature 35%
  • Cape Verde 32%

• Practical evaluation of SEEK and OpenBIS for biological data management in SynthSys; first report.

  Troup, E., Clark, I., Swain, P., Millar, A. & Zielinski, T., 30 Oct 2015, University of Edinburgh. 22 p.

  Research output: Book/Report › Other report

  Open Access

  File

  • data management 100%
  • need 49%
  • project 48%
  • evaluation 43%

• Defining the robust behaviour of the plant clock gene circuit with absolute RNA timeseries and open infrastructure

  Flis, A., Fernández, A. P., Zielinski, T., Mengin, V., Sulpice, R., Stratford, K., Hume, A., Pokhilko, A., Southern, M. M., Seaton, D. D., McWatters, H. G., Stitt, M., Halliday, K. J. & Millar, A. J., 14 Oct 2015, In: Open Biology. 5, 10, 150042.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Plant Genes 100%
  • Gene Regulatory Networks 66%
  • Sucrose 57%
  • Leaf Like Crystal 52%
  • RNA 42%

• A Bayesian approach for structure learning in oscillating regulatory networks

  Trejo-Banos, D., Millar, A. & Sanguinetti, G., 14 Jul 2015, In: Bioinformatics. 31, 22, p. 3617-3624 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Structure Learning 100%
  • Regulatory Networks 96%
  • Bayes Theorem 78%
  • Bayesian Approach 63%
  • Oscillation 50%