Research output per year
Research output per year
- 1 - 50 out of 90 results
Search results
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2023
Collaboration Across the Archival and Computational Sciences to Address Legacies of Gender Bias in Descriptive Metadata
Havens, L., Alex, B., Hosker, R., Bach, B. & Terras, M., 1 Jul 2023, p. 267-270.Research output: Contribution to conference › Abstract › peer-review
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Ontology-driven and weakly supervised rare disease identification from clinical notes
Dong, H., Suárez-Paniagua, V., Zhang, H., Wang, M., Casey, A., Davidson, E., Chen, J., Alex, B., Whiteley, W. & Wu, H., 5 May 2023, In: Bmc medical informatics and decision making. 23, 1Research output: Contribution to journal › Article › peer-review
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2022
Detecting Adverse Drug Events from social media: A brief literature review
Guellil, I., Chenni, N., Berrachedi, Y., Abboud, M-N., Wu, J., Wu, H. & Alex, B., 7 Dec 2022, The Sixth Widening NLP Workshop: Proceedings of the Workshop. ACL AnthologyResearch output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Automated clinical coding: What, why, and where we are?
Dong, H., Falis, M., Whiteley, W., Alex, B., Matterson, J., Ji, S., Chen, J. & Wu, H., 22 Oct 2022, In: npj Digital Medicine. 5, p. 1-8 8 p., 159.Research output: Contribution to journal › Review article › peer-review
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Edinburgh_UCL_Health@ SMM4H'22: From Glove to Flair for handling imbalanced healthcare corpora related to Adverse Drug Events, Change in medication and self-reporting vaccination
Guellil, I., Wu, J., Wu, H., Sun, T. & Alex, B., 11 Oct 2022, Proceedings of The Seventh Workshop on Social Media Mining for Health Applications, Workshop & Shared Task: The 29th International Conference on Computational Linguistics. ACL Anthology, p. 148-152Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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ISARIC-COVID-19 dataset: A Prospective, Standardized, Global Dataset of Patients Hospitalized with COVID-19
The Western Australian COVID-19 Research Response, Long COVID India Etienne, Mazankowski Heart Institute Ryckaert, ISARIC Collaborator Korten, ISARIC Clinical Characterization Group, Garcia-Gallo, E., Merson, L., Kennon, K., Kelly, S., Citarella, B. W., Fryer, D. V., Shrapnel, S., Lee, J., Duque, S., Fuentes, Y. V., Balan, V., Smith, S., Wei, J., Gonçalves, B. P., Russell, C. D., & 11 others, 30 Jul 2022, In: Scientific Data. 9, 1, p. 454 454.Research output: Contribution to journal › Article › peer-review
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Uncertainty and inclusivity in gender bias annotation: An annotation taxonomy and annotated datasets of British English text
Havens, L., Terras, M., Bach, B. & Alex, B., 15 Jul 2022, Proceedings of the 4th Workshop on Gender Bias in Natural Language Processing (GeBNLP). Hardmeier, C., Basta, C., Costa-jussà, M. R., Stanovsky, G. & Gonen, H. (eds.). ACL Anthology, p. 30-57 28 p.Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Beyond explanation: A case for exploratory text visualizations of non-aggregated, annotated datasets
Havens, L., Bach, B., Terras, M. & Alex, B., 20 Jun 2022.Research output: Contribution to conference › Paper › peer-review
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Developing automatic speech recognition for Scottish Gaelic
Evans, L., Lamb, W., Sinclair, M. & Alex, B., 15 Jun 2022, Proceedings of the 4th Celtic Language Technology Workshop at LREC 2022 (CLTW 4). Fransen, T., Lamb, W. & Prys, D. (eds.). European Language Resources Association (ELRA), p. 110-120 11 p.Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Handwriting recognition for Scottish Gaelic
Sinclair, M., Lamb, W. & Alex, B., 15 Jun 2022, Proceedings of the 4th Celtic Language Technology Workshop at LREC 2022 (CLTW 4). Fransen, T., Lamb, W. & Prys, D. (eds.). European Language Resources Association (ELRA), p. 60-70 11 p.Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Horses to Zebras: Ontology-Guided Data Augmentation and Synthesis for ICD-9 Coding
Falis, M., Dong, H., Birch, A. & Alex, B., 3 Jun 2022, Proceedings of the 21st Workshop on Biomedical Language Processing. Demner-Fushman, D., Cohen, K. B., Ananiadou, S. & Tsujii, J. (eds.). Dublin, Ireland: Association for Computational Linguistics, p. 389-401 13 p.Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Ontology-based and weakly supervised rare disease phenotyping from clinical notes
Dong, H., Suárez-Paniagua, V., Zhang, H., Wang, M., Casey, A., Davidson, E., Chen, J., Alex, B., Whiteley, W. & Wu, H., 1 May 2022, ArXiv.Research output: Working paper › Preprint
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Automated Clinical Coding: What, Why, and Where We Are?
Dong, H., Falis, M., Whiteley, W., Alex, B., Ji, S., Chen, J. & Wu, H., 21 Mar 2022, ArXiv, 8 p.Research output: Working paper › Preprint
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The Lothian Diary Project: Sociolinguistic methods during the COVID-19 lockdown
Hall-Lew, L., Cowie, C., Lai, C., Markl, N., McNulty, S., Liu, S-J. S., Llewellyn, C., Alex, B., Elliott Slosarova, Z. & Klingler, A., 1 Mar 2022, In: Linguistics Vanguard. 8, S3, p. 321-330 10 p.Research output: Contribution to journal › Article › peer-review
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2021
The impact of viral mutations on recognition by SARS-CoV-2 specific T cells
COVID-19 Genomics UK (COG-UK) Consortium, ISARIC4C Investigators, de Silva, T. I., Liu, G., Lindsey, B. B., Dong, D., Moore, S. C., Hsu, N. S., Shah, D., Wellington, D., Mentzer, A. J., Angyal, A., Brown, R., Parker, M. D., Ying, Z., Yao, X., Turtle, L., Dunachie, S., Maini, M. K., Ogg, G., & 4 others, 19 Nov 2021, In: iScience. 24, 11, 103353.Research output: Contribution to journal › Article › peer-review
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CoPHE: A Count-Preserving Hierarchical Evaluation Metric in Large-Scale Multi-Label Text Classification
Falis, M., Dong, H., Birch, A. & Alex, B., 7 Nov 2021, Proceedings of the 2021 Conference on Empirical Methods in Natural Language Processing. Stroudsburg, PA: Association for Computational Linguistics (ACL), p. 907-912 6 p.Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Extending defoe for the efficient analysis of historical texts at scale
Filgueira, R., Grover, C., Karaiskos, V., Alex, B., Van Eyndhoven, S., Gotthard, L. & Terras, M., 26 Oct 2021, 2021 IEEE 17th International Conference on eScience (eScience). IEEE, p. 21-29 9 p.Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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The reporting quality of natural language processing studies - systematic review of studies of radiology reports
Davidson, E., Poon, M., Casey, A., Grivas, A., Duma, D., Dong, H., Suarez Paniagua, V., Grover, C., Tobin, RICHARD., Whalley, H., Wu, H., Alex, B. & Whiteley, W. N., 2 Oct 2021, In: BMC medical imaging. 142.Research output: Contribution to journal › Article › peer-review
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COVID-19 symptoms at hospital admission vary with age and sex: results from the ISARIC prospective multinational observational study
ISARIC clinical characterisation group, 1 Oct 2021, In: Infection. 49, p. 889-905 17 p.Research output: Contribution to journal › Article › peer-review
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Classifying patient and professional voice in social media health posts
Alex, B., Whyte, D., Duma, D., Owen, R. E. & Fairley, E. A. L., 18 Aug 2021, In: Bmc medical informatics and decision making. 21, 1, p. 1-10 10 p., 244.Research output: Contribution to journal › Article › peer-review
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Towards Better Use of Ontological Structure in the Evaluation of Automated ICD Coding
Falis, M., Birch-Mayne, A. & Alex, B., 18 Jun 2021. 5 p.Research output: Contribution to conference › Paper › peer-review
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A systematic review of natural language processing applied to radiology reports
Casey, A., Davidson, E., Poon, M., Dong, H., Duma, D., Grivas, A., Grover, C., Suarez Paniagua, V., Tobin, RICHARD., Whiteley, W. N., Wu, H. & Alex, B., 3 Jun 2021, In: Bmc medical informatics and decision making. 21, 179.Research output: Contribution to journal › Article › peer-review
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A systematic review of natural language processing applied to radiology reports
Casey, A., Davidson, E., Poon, M., Dong, H., Duma, D., Grivas, A., Grover, C., Suárez-Paniagua, V., Tobin, R., Whiteley, W., Wu, H. & Alex, B., 3 Jun 2021, In: Bmc medical informatics and decision making. 21, 1, 18 p., 179 .Research output: Contribution to journal › Article › peer-review
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Documenting gender identities: Challenges and approaches to records of gender in archival metadata descriptions
Havens, L., Terras, M. & Alex, B., 1 Jun 2021.Research output: Contribution to conference › Abstract › peer-review
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The online pivot: Lessons learned from teaching a text and data mining course in lockdown, enhancing online teaching with pair programming and digital badges
Alex, B., Llewellyn, C., Orzechowski, P. & Boutchkova, M., 26 May 2021, Proceedings of the Fifth Workshop on Teaching NLP. Jurgens, D., Kolhatkar, V., Li, L., Mieskes, M. & Pedersen, T. (eds.). Association for Computational Linguistics, p. 138-148 11 p.Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Changes in in-hospital mortality in the first wave of COVID-19: a multicentre prospective observational cohort study using the WHO Clinical Characterisation Protocol UK
ISARIC investigators, 1 May 2021, In: The Lancet Respiratory Medicine.Research output: Contribution to journal › Article › peer-review
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The Lothian Diary Project: Investigating the impact of the COVID-19 pandemic on Edinburgh and Lothian residents
Hall-Lew, L., Cowie, C., McNulty, S. J., Markl, N., Liu, S., Lai, C., Llewellyn, C., Alex, B., Fang, N., Elliott Slosarova, Z. & Klingler, A., 16 Apr 2021, In: Journal of Open Humanities Data. 7, p. 1-5 5 p., 4.Research output: Contribution to journal › Special issue › peer-review
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Comparison of Rule-based and Neural Network Models for Negation Detection in Radiology Reports
Sykes, D., Grivas, A., Grover, C., Tobin, RICHARD., Sudlow, C., Whiteley, W., McIntosh, A., Whalley, H. & Alex, B., 1 Mar 2021, In: Natural Language Engineering. 27, 2, p. 203-224 22 p.Research output: Contribution to journal › Article › peer-review
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Plague Dot Text: Text mining and annotation of outbreak reports of the Third Plague Pandemic (1894-1952)
Casey, A., Bennett, M., Tobin, RICHARD., Grover, C., Walker, I., Engelmann, L. & Alex, B., 20 Jan 2021, In: Journal of Data Mining and Digital Humanities. 2021, p. 1-22 22 p.Research output: Contribution to journal › Article › peer-review
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2020
Enhanced labelling in active learning for coreference resolution
Espeland, V., Bach, B. & Alex, B., 12 Dec 2020, Proceedings of the Third Workshop on Computational Models of Reference, Anaphora and Coreference 2020. Association for Computational Linguistics, p. 111-121 11 p.Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Not a cute stroke: Analysis of Rule- and Neural Network-based Information Extraction Systems for Brain Radiology Reports
Grivas, A., Alex, B., Grover, C., Tobin, RICHARD. & Whiteley, W., 20 Nov 2020, Proceedings of the 11th International Workshop on Health Text Mining and Information Analysis. Association for Computational Linguistics, p. 24–37 14 p.Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Detection of neutralising antibodies to SARS-CoV-2 to determine population exposure in Scottish blood donors between March and May 2020
ISARIC4C Investigators, 22 Oct 2020, In: Eurosurveillance. 25, 42, 9 p.Research output: Contribution to journal › Article › peer-review
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Situated Data, Situated Systems: A Methodology to Engage with Power Relations in Natural Language Processing Research
Havens, L., Terras, M., Bach, B. & Alex, B., 9 Oct 2020, (Accepted/In press).Research output: Contribution to conference › Paper › peer-review
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The challenges and prospects of the intersection of humanities and data science: A White Paper from The Alan Turing Institute.
McGillivray, B., Alex, B., Ames, S., Armstrong, G., Beavan, D., Ciula, A., Colavizza, G., Cummings, J., David, D. R., Farquhar, A., Hengchen, S., Lang, A., Loxley, J., Goudarouli, E., Nanni, F., Nini, A., Nyhan, J., Osborne, N., Poibeau, T., Ridge, M., & 5 others, Aug 2020, The Alan Turing Institute, p. 1, 30 p.Research output: Working paper › Discussion paper
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Teaching a Text Mining Bootcamp in Lockdown
Llewellyn, C., Orzechowski, P. & Alex, B., Jun 2020, Edinburgh, p. 1-7, 7 p.Research output: Working paper
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Geoparsing the Historical Gazetteers of Scotland: Accurately Computing Location in Mass Digitised Texts
Filgueira Vicente, R., Grover, C., Terras, M. & Alex, B., 16 May 2020, Proceedings of the 8th Workshop on Challenges in the Management of Large Corpora. Marseille, France: European Language Resources Association (ELRA), p. 24–30 7 p.Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Library Carpentry: Text & Data Mining
Alex, B. & Llewellyn, C., 2020, Library Carpentries.Research output: Other contribution
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2019
Geoparsing Historical and Contemporary Literary Text set in the City of Edinburgh
Alex, B., Grover, C., Tobin, R. & Oberlander, J., 1 Dec 2019, In: Language Resources and Evaluation. 53, 4, p. 651–675 24 p.Research output: Contribution to journal › Article › peer-review
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Text Mining Brain Imaging Reports
Alex, B., Grover, C., Tobin, R., Sudlow, C., Mair, G. & Whiteley, W., 12 Nov 2019, In: Journal of Biomedical Semantics. 10, 23.Research output: Contribution to journal › Article › peer-review
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Automatic coding of occupation and cause-of-death records
Tobin, R., Farrow, E., Grover, C. & Alex, B., 8 Nov 2019, In: International Journal of Population Data Science. 4, 3, 1 p.Research output: Contribution to journal › Meeting abstract
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Detecting Topic-Oriented Speaker Stance in Conversational Speech
Lai, C., Alex, B., Moore, J. D., Tian, L., Hori, T. & Francesca, G., 19 Sept 2019, Proceedings of Interspeech 2019. International Speech Communication Association, p. 46-50 5 p. (Interspeech).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Plague Dot Text: Text mining and annotation of outbreak reports of the Third Plague Pandemic (1894-1952)
Casey, A., Bennett, M., Tobin, R., Grover, C., Engelmann, L. & Alex, B., 12 Sept 2019, HistoInformatics 2019: International Workshop on Computational History 2019. Wevers, M., Hasanuzzaman, M., Dias, G., Düring, M. & Jatowt, A. (eds.). CEUR Workshop Proceedings, Vol. 2461. p. 50-59 (CEUR Workshop Proceedings).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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A validated natural language processing algorithm for brain imaging phenotypes from radiology reports in UK electronic health records
Wheater, E., Mair, G., Sudlow, C., Alex, B., Grover, C. & Whiteley, W., 9 Sept 2019, (E-pub ahead of print) In: Bmc medical informatics and decision making.Research output: Contribution to journal › Article › peer-review
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"Why is the Doctor a Man?" Reactions of Older Adults to a Virtual Training Doctor
Constantin, A., Lai, C., Farrow, E., Alex, B., Pel-Littel, R., Nap, H. H. & Jeuring, J., 2 May 2019, Extended Abstracts of the 2019 CHI Conference on Human Factors in Computing Systems. Glasgow, Scotland UK: ACM, 6 p. LBW1719. (CHI EA '19).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Named Entity Recognition for Electronic Health Records: A Comparison of Rule-based and Machine Learning Approaches
Gorinski, P. J., Wu, H., Grover, C., Tobin, R., Talbot, C., Whalley, H., Whiteley, W. & Alex, B., 26 Feb 2019, (Accepted/In press). 8 p.Research output: Contribution to conference › Paper › peer-review
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2018
Text Mining Brain Imaging Reports
Grover, C., Tobin, R., Alex, B., Sudlow, C., Mair, G. & Whiteley, W., Apr 2018.Research output: Contribution to conference › Paper › peer-review
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'Multiplicity embarrasses the eye': The digital mapping of literary Edinburgh
Loxley, J., Alex, B., Anderson, M., Hinrichs, U., Grover, C., Harris-Birtill, D., Thomson, T., Quigley, A. & Oberlander, J., 18 Jan 2018, The Routledge Companion to Spatial History . Gregory, I., DeBats, D. & Lafreniere, D. (eds.). Abingdon; New York: Routledge, p. 604-628 25 p. (Routledge Companions).Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review
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2017
Palimpsest: Improving Assisted Curation of Loco-specific Literature
Alex, B., Grover, C., Oberlander, J., Thomson, T., Anderson, M., Loxley, J., Hinrichs, U. & Zhou, K., 1 Apr 2017, In: Digital Scholarship in the Humanities. 32, 1, p. i4-i16 13 p.Research output: Contribution to journal › Article › peer-review
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Sensitizing social data science: Combining empirical social research with computational approaches to the analysis of career data
Campagnolo, G., Williams, R., Alex, B., Acerbi, A. & Chapple, D., 2017, (In preparation) p. 1-49, 49 p.Research output: Working paper
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Sensitizing social data science: combining empirical social research with computational approaches to influencer detection
Campagnolo, G., Williams, R., Alex, B., Acerbi, A. & Chapple, D., 2017, (Submitted).Research output: Working paper