Bryan Wee

2024

PHA4GE quality control contextual data tags: standardized annotations for sharing public health sequence datasets with known quality issues to facilitate testing and training

Griffiths, E. J., Mendes, I., Maguire, F., Guthrie, J. L., Wee, B. A., Schmedes, S., Holt, K., Yadav, C., Cameron, R., Barclay, C., Dooley, D., MacCannell, D., Chindelevitch, L., Karsch-Mizrachi, I., Waheed, Z., Katz, L., Petit Iii, R., Dave, M., Oluniyi, P., Nasar, M. I., & 3 othersRaphenya, A., Hsiao, W. W. L. & Timme, R. E., 11 Jun 2024, (E-pub ahead of print) In: Microbial Genomics. 10, 6, p. 1-12 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

HtrA, fatty acids, and membrane protein interplay in Chlamydia trachomatis to impact stress response and trigger early cellular exit

Strange, N., Luu, L., Ong, V., Wee, B. A., Phillips, M. J. A., McCaughey, L., Steele, J. R., Barlow, C. K., Cranfield, C. G., Myers, G., Mazraani, R., Rock, C., Timms, P. & Huston, W. M., 18 Apr 2024, In: Journal of Bacteriology. 206, 4, p. 1-21 21 p., e0037123.

Research output: Contribution to journal › Article › peer-review

Open Access

File

2023

Distinctive hospital and community resistomes in Scottish urban wastewater: Metagenomics of a paired wastewater sampling design

Lepper, H. C., Perry, M. R., Wee, B. A., Wills, D., Nielsen, H., Otani, S., Simon, M., Aarestrup, F. M., Woolhouse, M. E. J. & van Bunnik, B. A. D., 1 Dec 2023, In: Science of the Total Environment. 902, p. 1-50 50 p., 165978.

Research output: Contribution to journal › Article › peer-review

Open Access

File

A Digital One Health framework to integrate data for public health decision-making

Redman-White, C., Loosli, K., Qarkaxhija, V., Lee, T., Mboowa, G., Wee, B. A. & Muwonge, A., 8 Nov 2023, (E-pub ahead of print) In: The International Journal of Infectious Diseases- One Health. p. 1-6 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Phylogenetic relationship and virulence composition of Escherichia coli O26:H11 cattle and human strain collections in Scotland; 2002-2020

Hoyle, D., Wee, B. A., Macleod, K., Chase-Topping, M., Bease, A., Tongue, S. C., Gally, D., Delannoy, S., Fach, P., Pearce, M. C., Gunn, G. J., Holmes, A. & Allison, L., 6 Nov 2023, (E-pub ahead of print) In: Frontiers in Microbiology. 14, p. 1-18 18 p., 1260422.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Rapid metagenomic sequencing for diagnosis and antimicrobial sensitivity prediction of canine bacterial infections

Ring, N., Low, A., Wee, B. A., Paterson, G., Nuttall, T., Gally, D., Mellanby, R. & Fitzgerald, R., 20 Jul 2023, (E-pub ahead of print) In: Microbial Genomics. 9, 7, p. 1-18 18 p.

Research output: Contribution to journal › Article › peer-review

Open Access

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An open-source digital contact tracing system tailored to haulage

Muwonge, A., Wee, B. A., Mugerwa, I., Nabunya, E., Mpyangu, C. M., Bronsvoort, M., Ssebaggala, E. R., Kiayias, A., Mwaka, E. S. & Joloba, M. L., 19 Jul 2023, (E-pub ahead of print) In: Frontiers in Digital Health. 5, p. 1-14 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Epidemiological connectivity between humans and animals across an urban landscape

Hassell, J. M., Muloi, D., VanderWaal, K. L., Ward, M. J., Bettridge, J., Gitahi, N., Ouko, T., Imboma, T., Akoko, J., Karani, M., Muinde, P., Nakamura, Y., Alumasa, L., Furmaga, E., Kaitho, T., Amanya, F., Ogendo, A., Fava, F., Wee, B. A., Phan, H., & 7 othersKiiru, J., Kang’ethe, E., Kariuki, S., Robinson, T., Begon, M., Woolhouse, M. E. J. & Fevre, E. M., 14 Jul 2023, In: Proceedings of the National Academy of Sciences (PNAS). 120, 29, 12 p., 2218860120.

Research output: Contribution to journal › Article › peer-review

Open Access

File

2022

Genomic epidemiology of Escherichia coli: Antimicrobial resistance through a One Health lens in sympatric humans, livestock and peri-domestic wildlife in Nairobi, Kenya

Muloi, D. M., Hassell, J. M., Wee, B. A., Ward, M. J., Bettridge, J. M., Kivali, V., Kiyong’a, A., Ndinda, C., Gitahi, N., Ouko, T., Imboma, T., Akoko, J., Murungi, M. K., Njoroge, S. M., Muinde, P., Alumasa, L., Kaitho, T., Amanya, F., Ogendo, A., van Bunnik, B. A. D., & 7 othersKiiru, J., Robinson, T. P., Kang’ethe, E. K., Kariuki, S., Pedersen, A. B., Fèvre, E. M. & Woolhouse, M. E. J., 8 Dec 2022, In: BMC Medicine. 20, 1, 471.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Epidemiological analysis of Legionnaires’ disease in Scotland: a genomic study

Gorzynski, J., Wee, B. A., Llano, M., Alves, J., Cameron, R. L., McMenamin, J., Smith, A., Lindsay, D. & Fitzgerald, R., 11 Oct 2022, (E-pub ahead of print) In: The Lancet Microbe. 3, p. e835–45

Research output: Contribution to journal › Article › peer-review

Open Access

File

Population genomics of Escherichia coli in livestock-keeping households across a rapidly developing urban landscape

Muloi, D., Wee, B. A., Mcclean, D., Ward, M., Pankhurst, L., Phan, H., Ivens, A., Kivali, V., Kiyonga, A., Ndinda, C., Gitahi, N., Ouko, T., Hassell, J. M., Imboma, T., Akoko, J., Murungi, M. K., Njoroge, S. M., Muinde, P., Nakamura, Y., Alumasa, L., & 17 othersFurmaga, E., Kaitho, T., Öhgren, E., Amanya, F., Ogendo, A., Wilson, D., Bettridge, J., Kiiru, J., Kyobutungi, C., Tacoli, C., Kang'ethe, E., Davila, J., Kariuki, S., Robinson, T., Rushton, J., Woolhouse, M. & Fèvre, E. M., 14 Mar 2022, In: Nature Microbiology. 7, 4, p. 581-589

Research output: Contribution to journal › Article › peer-review

Open Access

File

2021

Population analysis of Legionella pneumophila reveals a basis for resistance to complement-mediated killing

Wee, B. A., Alves, J., Lindsay, D. S. J., Klatt, A-B., Sargison, F. A., Cameron, R. L., Pickering, A., Gorzynski, J., Corander, J., Marttinen, P., Opitz, B., Smith, A. J. & Fitzgerald, J. R., 9 Dec 2021, In: Nature Communications. 12, 1, 7165.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Secrets of the hospital underbelly: patterns of abundance of antimicrobial resistance genes in hospital wastewater vary by specific antimicrobial and bacterial family

Perry, M., Lepper, H., McNally, L., Wee, B. A., Munk, P., Warr, A., Moore, B., Kalima, P., Philip, C., Husman, A. M. D. R., Aarestrup, F. M., Woolhouse, M. & van Bunnik, B. A. D., 10 Sept 2021, (E-pub ahead of print) In: Frontiers in Microbiology.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Evolutionary and functional analysis of coagulase-positivity among the Staphylococci

Pickering, A., Yebra, G., Gong, X., Goncheva, M., Wee, B. A., Macfadyen, A., Muehlbauer, L. F., Alves, J., Cartwright, R., Paterson, G. & Fitzgerald, R., 4 Aug 2021, (E-pub ahead of print) In: mSphere. e0038121.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Radical genome remodelling accompanied the emergence of a novel host-restricted bacterial pathogen

Yebra, G., Haag, A. F., Neamah, M. M., Wee, B. A., Richardson, E. J., Horcajo, P., Granneman, S., Tormo-Más, M. Á., de la Fuente, R., Fitzgerald, J. R. & Penadés, J. R., 20 May 2021, (E-pub ahead of print) In: PLoS Pathogens. 17, 5, e1009606.

Research output: Contribution to journal › Article › peer-review

Open Access

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Transmission, adaptation and geographical spread of the Pseudomonas aeruginosa Liverpool epidemic strain

Moore, M. P., Lamont, I. L., Williams, D., Paterson, S., Kukavica-Ibrulj, I., Tucker, N. P., Kenna, D. T. D., Turton, J. F., Jeukens, J., Freschi, L., Wee, B. A., Loman, N. J., Holden, S., Manzoor, S., Hawkey, P., Southern, K. W., Walshaw, M. J., Levesque, R. C., Fothergill, J. L. & Winstanley, C., 15 Mar 2021, In: Microbial Genomics.

Research output: Contribution to journal › Article › peer-review

Open Access

File

2020

Quantifying the transmission of antimicrobial resistance at the human and livestock interface with genomics

Wee, B. A., Muloi, D. & van Bunnik, B. A. D., 1 Dec 2020, In: Clinical Microbiology and Infection. 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

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The Aedes aegypti Domino Ortholog p400 Regulates Antiviral Exogenous Small Interfering RNA Pathway Activity and ago-2 Expression

McFarlane, M., Almire, F., Kean, J., Donald, C. L., McDonald, A., Wee, B., Lauréti, M., Varjak, M., Terry, S., Vazeille, M., Gestuveo, R. J., Dietrich, I., Loney, C., Failloux, A-B., Schnettler, E., Pondeville, E. & Kohl, A., 8 Apr 2020, In: mSphere. 5, 2

Research output: Contribution to journal › Article › peer-review

Open Access

File

Metagenomic sequencing of clinical samples reveals a single widespread clone of Lawsonia intracellularis responsible for porcine proliferative enteropathy.

Bengtsson, R., Wee, B., Yebra, G., Bacigalupe, R., Watson, E., Guedes, R. M. C., Jacobson, M., Stadejek, T., Archibald, A., Fitzgerald, R. & Ait-Ali, T., 2 Apr 2020, In: Microbial Genomics.

Research output: Contribution to journal › Article › peer-review

Open Access

File

2019

Antimicrobial resistance in hospital wastewater in Scotland: a cross-sectional metagenomics study

Perry, M., van Bunnik, B., McNally, L., Wee, B., Munk, P., Warr, A., Moore, B., Kalima, P., Philip, C., Husman, A. M. D. R., Aarestrup, F. & Woolhouse, M., 1 Nov 2019, In: The Lancet. 394, p. 1-1

Research output: Contribution to journal › Meeting abstract › peer-review

2018

Bovine Staphylococcus aureus superantigens stimulate the entire T 2 cell repertoire of cattle.

Wilson, G., Tuffs, S., Wee, B. A., Seo, K. S., Park, N., Connelley, T., Guinane, C. M., Morrison, W. & Fitzgerald, J., Nov 2018, In: Infection and Immunity. 86, 11, p. 1-16 16 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Whole genome sequencing reveals the emergence of a Pseudomonas aeruginosa shared strain sub-lineage among patients treated within a single cystic fibrosis centre

Wee, B. A., Tai, A. S., Sherrard, L. J., Ben Zakour, N. L., Hanks, K. R., Kidd, T. J., Ramsay, K. A., Lamont, I., Whiley, D. M., Bell, S. C. & Beatson, S. A., 30 Aug 2018, In: BMC Genomics. 19, 1, p. 644

Research output: Contribution to journal › Article › peer-review

Open Access

File

2017

The Staphylococcus aureus superantigen SElX is a bifunctional toxin that inhibits neutrophil function: SElX Inhibits Neutrophil Function

Tuffs, S., James, D., Bestebroer, J., Richards, A., Goncheva, M., O'Shea, M., Wee, B. A., Seo, K. S., Schlievert, P. M., Lengeling, A., van Strijp, J. A. G., Torres, V. J. & Fitzgerald, J., 7 Sept 2017, In: PLoS Pathogens. 13, 9, e1006461.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Tandem amplification of SCCmec can drive high level methicillin resistance in MRSA

Gallagher, L. A., Coughlan, S., Black, N. S., Lalor, P., Waters, E. M., Wee, B., Watson, M., Downing, T., Fitzgerald, J. R., Fleming, G. T. A. & O'gara, J. P., Sept 2017, In: Antimicrobial Agents and Chemotherapy. 61, 9, e00869-17.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Within-host whole genome analysis of an antibiotic resistant Pseudomonas aeruginosa strain sub-type in cystic fibrosis

Sherrard, L. J., Tai, A. S., Wee, B. A., Ramsay, K. A., Kidd, T. J., Ben Zakour, N. L., Whiley, D. M., Beatson, S. A., Bell, S. C. & Chotirmall, S. H. (ed.), 8 Mar 2017, In: PLoS ONE. 12, 3, e0172179.

Research output: Contribution to journal › Article › peer-review

Open Access

File

2016

Within-host whole genome analysis of an antibiotic resistant Pseudomonas aeruginosa sub-lineage in cystic fibrosis

Sherrard, L. J., Tai, A., Wee, B., Ramsay, K. A., Stockwell, R. E., Kidd, T. J., Whiley, D. M., Beatson, S. A. & Bell, S. C., 1 Jun 2016, p. S2.

Research output: Contribution to conference › Abstract › peer-review

Bryan Wee

Research output

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