David Tollervey

2014

Rio1 mediates ATP-dependent final maturation of 40S ribosomal subunits

Turowski, T. W., Lebaron, S., Zhang, E., Peil, L., Dudnakova, T., Petfalski, E., Granneman, S., Rappsilber, J. & Tollervey, D., 7 Oct 2014, In: Nucleic Acids Research. 42, 19, p. 12189-12199 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Lighting up pre-mRNA recognition

Delan-Forino, C. & Tollervey, D., 4 Sept 2014, In: Molecular Cell. 55, 5, p. 649-651 3 p.

Research output: Contribution to journal › Short survey › peer-review

Cotranscriptional events in eukaryotic ribosome synthesis

Turowski, T. W. & Tollervey, D., 1 Sept 2014, In: Wiley Interdisciplinary Reviews: RNA.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Identification of bacteriophage-encoded anti-sRNAs in pathogenic escherichia coli

Tree, J. J., Granneman, S., McAteer, S. P., Tollervey, D. & Gally, D. L., 17 Jul 2014, In: Molecular Cell. 55, 2, p. 199-213 15 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Ki-67 is a PP1-interacting protein that organises the mitotic chromosome periphery

Booth, D. G., Takagi, M., Sanchez-Pulido, L., Petfalski, E., Vargiu, G., Samejima, K., Imamoto, N., Ponting, C. P., Tollervey, D., Earnshaw, W. C. & Vagnarelli, P., 27 May 2014, In: eLIFE. 3, 22 p., e01641.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Final Pre-40S Maturation Depends on the Functional Integrity of the 60S Subunit Ribosomal Protein L3

García-Gómez, J. J., Fernández-Pevida, A., Lebaron, S., Rosado, I. V., Tollervey, D., Kressler, D. & de la Cruz, J., 6 Mar 2014, In: PLoS Genetics. 10, 3, e1004205.

Research output: Contribution to journal › Article › peer-review

Open Access

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Mapping the miRNA interactome by cross-linking ligation and sequencing of hybrids (CLASH)

Helwak, A. & Tollervey, D., 27 Feb 2014, In: Nature Protocols. 9, 3, p. 711-728 18 p.

Research output: Contribution to journal › Article › peer-review

A new system for naming ribosomal proteins

Ban, N., Beckmann, R., Cate, J. H., Dinman, J. D., Dragon, F., Ellis, S. R., Lafontaine, D. L., Lindahl, L., Liljas, A., Lipton, J. M., McAlear, M. A., Moore, P. B., Noller, H. F., Ortega, J., Panse, V. G., Ramakrishnan, V., Spahn, C. M., Steitz, T. A., Tchorzewski, M., Tollervey, D., & 5 othersWarren, A. J., Williamson, J. R., Wilson, D., Yonath, A. & Yusupov, M., 10 Feb 2014, In: Current opinion in structural biology. 24, p. 165-169

Research output: Contribution to journal › Article › peer-review

Kinetic analysis demonstrates a requirement for the Rat1 exonuclease in cotranscriptional pre-rRNA cleavage

Axt, K., French, S. L., Beyer, A. L. & Tollervey, D., 3 Feb 2014, In: PLoS ONE. 9, 2, e85703.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Looking into the barrel of the RNA exosome

Schneider, C. & Tollervey, D., 6 Jan 2014, In: Nature Structural and Molecular Biology. 21, 1, p. 17-18 2 p.

Research output: Contribution to journal › Comment/debate › peer-review

Coupled GTPase and remodelling ATPase activities form a checkpoint for ribosome export

Matsuo, Y., Granneman, S., Thoms, M., Manikas, R-G., Tollervey, D. & Hurt, E., 2 Jan 2014, In: Nature. 505, 7481, p. 112-6 14 p.

Research output: Contribution to journal › Article › peer-review

Open Access

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A network of assembly factors is involved in remodeling rRNA elements during preribosome maturation

Baßler, J., Paternoga, H., Holdermann, I., Thoms, M., Granneman, S., Barrio-Garcia, C., Nyarko, A., Stier, G., Clark, S. A., Schraivogel, D., Kallas, M., Beckmann, R., Tollervey, D., Barbar, E., Sinning, I. & Hurt, E., 1 Jan 2014, In: Journal of Cell Biology. 207, 4, p. 481-498 18 p.

Research output: Contribution to journal › Article › peer-review

Open Access

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RNA Mimicry by the Fap7 Adenylate Kinase in Ribosome Biogenesis

Loc'h, J., Blaud, M., Réty, S., Lebaron, S., Deschamps, P., Bareille, J., Jombart, J., Robert-Paganin, J., Delbos, L., Chardon, F., Zhang, E., Charenton, C., Tollervey, D. & Leulliot, N., 1 Jan 2014, In: PLoS Biology. 12, 5, e1001860.

Research output: Contribution to journal › Article › peer-review

Integrity of SRP RNA is ensured by La and the nuclear RNA quality control machinery

Leung, E., Schneider, C., Yan, F., Mohi-El-Din, H., Kudla, G., Tuck, A., Wlotzka, W., Doronina, V. A., Bartley, R., Watkins, N. J., Tollervey, D. & Brown, J. D., 2014, In: Nucleic Acids Research. 42, 16, p. 10698-10710 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

2013

Rrp5 binding at multiple sites coordinates pre-rRNA processing and assembly

Lebaron, S., Segerstolpe, A., French, S. L., Dudnakova, T., de Lima Alves, F., Granneman, S., Rappsilber, J., Beyer, A. L., Wieslander, L. & Tollervey, D., 12 Dec 2013, In: Molecular Cell. 52, 5, p. 707-19 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Hyb: A bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data

Travis, A. J., Moody, J., Helwak, A., Tollervey, D. & Kudla, G., 6 Nov 2013, In: Methods. 65, 3, p. 263–273

Research output: Contribution to journal › Article › peer-review

Open Access

File

Functions of long non-coding RNAs in non-mammalian systems

Tuck, A. & Tollervey, D., 1 Nov 2013, Molecular Biology of Long Non-Coding RNAs. Springer, p. 137-162 26 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

A transcriptome-wide atlas of RNP composition reveals diverse classes of mRNAs and lncRNAs

Tuck, A. C. & Tollervey, D., 29 Aug 2013, In: Cell. 154, 5, p. 996-1009 14 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Threading the barrel of the RNA exosome

Schneider, C. & Tollervey, D., 2 Aug 2013, In: Trends in biochemical sciences. 38, 10, p. 485-493

Research output: Contribution to journal › Article › peer-review

Open Access

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Mapping the Human miRNA Interactome by CLASH Reveals Frequent Noncanonical Binding

Helwak, A., Kudla, G., Dudnakova, T. & Tollervey, D., 25 Apr 2013, In: Cell. 153, 3, p. 654-665 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Both endonucleolytic and exonucleolytic cleavage mediate ITS1 removal during human ribosomal RNA processing

Sloan, K. E., Watkins, N. J., Mattijssen, S., Pruijn, G. J. M., Lebaron, S. & Tollervey, D., Mar 2013, In: Journal of Cell Biology. 200, 5, p. 577-588 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Multiple RNA interactions position Mrd1 at the site of the small subunit pseudoknot within the 90S pre-ribosome

Segerstolpe, A., Björk, P., Wieslander, L., Granneman, S., De Lima Alves, F., Rappsilber, J., Tollervey, D., Andersson, C. & Högbom, M., 1 Jan 2013, In: Nucleic Acids Research. 41, 2, p. 1178-1190 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

2012

Kinetic analysis of pre-ribosome structure in vivo

Swiatkowska, A., Wlotzka, W., Tuck, A., Barrass, J. D., Beggs, J. D. & Tollervey, D., 1 Dec 2012, In: RNA. 18, 12, p. 2187-2200 14 p.

Research output: Contribution to journal › Article › peer-review

Open Access

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Transcriptome-wide analysis of exosome targets

Schneider, C., Kudla, G., Wlotzka, W., Tuck, A. & Tollervey, D., 9 Nov 2012, In: Molecular Cell. 48, 3, p. 422-433 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

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Brr2p-mediated conformational rearrangements in the spliceosome during activation and substrate repositioning

Hahn, D., Kudla, G., Tollervey, D. & Beggs, J. D., 1 Nov 2012, In: Genes & Development. 26, 21, p. 2408-21 14 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Identification of RNA helicase target sites by UV cross-linking and analysis of cDNA

Bohnsack, M. T., Tollervey, D. & Granneman, S., 16 Jun 2012, In: Methods in enzymology. 511, p. 275-88 14 p.

Research output: Contribution to journal › Article › peer-review

An RNA reset button

Tollervey, D. & Tuck, A. C., 24 Feb 2012, In: Molecular Cell. 45, 4, p. 435-436 2 p.

Research output: Contribution to journal › Editorial › peer-review

Murine cytomegalovirus encodes a miR-27 inhibitor disguised as a target

Libri, V., Helwak, A., Miesen, P., Santhakumar, D., Borger, J. G., Kudla, G., Grey, F., Tollervey, D. & Buck, A. H., Jan 2012, In: Proceedings of the National Academy of Sciences (PNAS). 109, 1, p. 279-284 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

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Proofreading of pre-40S ribosome maturation by a translation initiation factor and 60S subunits

Lebaron, S., Schneider, C., van Nues, R. W., Swiatkowska, A., Walsh, D., Böttcher, B., Granneman, S., Watkins, N. J. & Tollervey, D., 2012, In: Nature Structural & Molecular Biology. 19, 8, p. 744–753

Research output: Contribution to journal › Article › peer-review

Open Access

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Structure of the pre-60S ribosomal subunit with nuclear export factor Arx1 bound at the exit tunnel

Bradatsch, B., Leidig, C., Granneman, S., Gnädig, M., Tollervey, D., Böttcher, B., Beckmann, R. & Hurt, E., 2012, In: Nature Structural & Molecular Biology.

Research output: Contribution to journal › Article › peer-review

Open Access

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Using High Throughput Sequencing to Characterise Key Regulators of the Cold Shock Response.

McGibbon, L., Tree, J., Granneman, S., Woodall, K., Gally, D., Blakely, G., Tollervey, D. & Gallagher, M., 2012, p. 74.

Research output: Contribution to conference › Poster

2011

Repeat expansion in the budding yeast ribosomal DNA can occur independently of the canonical homologous recombination machinery

Houseley, J. & Tollervey, D., Nov 2011, In: Nucleic Acids Research. 39, 20, p. 8778-8791 14 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

RNA in pieces

Tuck, A. C. & Tollervey, D., 1 Oct 2011, In: Trends in Genetics. 27, 10, p. 422-432 11 p.

Research output: Contribution to journal › Literature review › peer-review

A cluster of ribosome synthesis factors regulate pre-rRNA folding and 5.8S rRNA maturation by the Rat1 exonuclease

Granneman, S., Petfalski, E. & Tollervey, D., Oct 2011, In: EMBO Journal. 30, 19, p. 4006-4019 14 p.

Research output: Contribution to journal › Article › peer-review

Open Access

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Box C/D snoRNP catalysed methylation is aided by additional pre-rRNA base-pairing

Van Nues, R. W., Granneman, S., Kudla, G., Sloan, K. E., Chicken, M., Tollervey, D. & Watkins, N. J., 15 Jun 2011, In: EMBO Journal. 30, 12, p. 2420-2430 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

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The nuclear RNA polymerase II surveillance system targets polymerase III transcripts

Wlotzka, W., Kudla, G., Granneman, S. & Tollervey, D., 4 May 2011, In: EMBO Journal. 30, 9, p. 1790-1803 14 p.

Research output: Contribution to journal › Article › peer-review

Open Access

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Distinguishing the Roles of Topoisomerases I and II in Relief of Transcription-Induced Torsional Stress in Yeast rRNA Genes

French, S. L., Sikes, M. L., Hontz, R. D., Osheim, Y. N., Lambert, T. E., El Hage, A., Smith, M. M., Tollervey, D., Smith, J. S. & Beyer, A. L., Feb 2011, In: Molecular and Cellular Biology. 31, 3, p. 482-494 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

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Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast

Kudla, G., Granneman, S., Hahn, D., Beggs, J. D. & Tollervey, D., 2011, In: Proceedings of the National Academy of Sciences (PNAS). 108, 24, p. 10010–10015 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

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In vivo targets of the cold shock proteins CspA and CspE

McGibbon, L., Tree, J., Woodall, K., Wlotzka, W., Granneman, S., Blakely, G., Gally, D., Tollervey, D. & Gallagher, M., 2011, p. 44.

Research output: Contribution to conference › Abstract

2010

RiboSys, a high-resolution, quantitative approach to measure the in vivo kinetics of pre-mRNA splicing and 3 '-end processing in Saccharomyces cerevisiae

Alexander, R. D., Barrass, J. D., Dichtl, B., Kos, M., Obtulowicz, T., Robert, M-C., Koper, M., Karkusiewicz, I., Mariconti, L., Tollervey, D., Dichtl, B., Kufel, J., Bertrand, E. & Beggs, J. D., Dec 2010, In: RNA. 16, 12, p. 2570-2580 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

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Apparent Non-Canonical Trans-Splicing Is Generated by Reverse Transcriptase In Vitro

Houseley, J. & Tollervey, D., 18 Aug 2010, In: PLoS ONE. 5, 8, p. - 7 p., e12271.

Research output: Contribution to journal › Article › peer-review

Open Access

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Loss of Topoisomerase I leads to R-loop-mediated transcriptional blocks during ribosomal RNA synthesis

El Hage, A., French, S. L., Beyer, A. L. & Tollervey, D., 15 Jul 2010, In: Genes & Development. 24, 14, p. 1546-1558 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

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Cracking pre-40S ribosomal subunit structure by systematic analyses of RNA-protein cross-linking

Granneman, S., Petfalski, E., Swiatkowska, A. & Tollervey, D., 16 Jun 2010, In: EMBO Journal. 29, 12, p. 2026-2036 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

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Yeast Pre-rRNA Processing and Modification Occur Cotranscriptionally

Kos, M. & Tollervey, D., 26 Mar 2010, In: Molecular Cell. 37, 6, p. 809-820 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

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The Final Step in 5.8S rRNA Processing Is Cytoplasmic in Saccharomyces cerevisiae

Thomson, E. & Tollervey, D., 15 Feb 2010, In: Molecular and Cellular Biology. 30, 4, p. 976-984 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

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FINDING THE EXOSOME

Mitchell, P. & Tollervey, D., 2010, RNA EXOSOME. BERLIN: Springer, p. 1-8 8 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2009

RNA Helicase Prp43 and Its Co-factor Pfa1 Promote 20 to 18 S rRNA Processing Catalyzed by the Endonuclease Nob1

Pertschy, B., Schneider, C., Gnaedig, M., Schaefer, T., Tollervey, D. & Hurt, E., 11 Dec 2009, In: Journal of Biological Chemistry. 284, 50, p. 35079-35091 13 p.

Research output: Contribution to journal › Article › peer-review

Rrp17p Is a Eukaryotic Exonuclease Required for 5 ' End Processing of Pre-60S Ribosomal RNA

Oeffinger, M., Zenklusen, D., Ferguson, A., Wei, K. E., El Hage, A., Tollervey, D., Chait, B. T., Singer, R. H. & Rout, M. P., 11 Dec 2009, In: Molecular Cell. 36, 5, p. 768-781 14 p.

Research output: Contribution to journal › Article › peer-review

Open Access

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