Davide Marenduzzo

Search results

• Polymer Simulations of Heteromorphic Chromatin Predict the 3-D Folding of Complex Genomic Loci

  Buckle, A. (Creator), Brackley, C. (Creator), Marenduzzo, D. (Creator) & Gilbert, N. (Creator), Edinburgh DataShare, 4 Sept 2018

  DOI: 10.7488/ds/2434

  Dataset

• Interaction between Nearly Hard Colloidal Spheres at an Oil-Water Interface v2

  Muntz, I. (Creator), Hunter, M. (Creator), Waggett, F. (Creator), Schofield, A. (Creator), Bartlett, P. (Creator), Marenduzzo, D. (Creator) & Thijssen, J. (Creator), Edinburgh DataShare, 20 May 2020

  DOI: 10.7488/ds/2848

  Dataset

• Complex small-world regulatory networks emerge from the 3D organisation of the human genome

  Papantonis, A. (Creator), Pereira, M. (Creator), Marenduzzo, D. (Creator), Cook, P. (Creator), Brackley, C. (Creator), Gilbert, N. (Creator) & Michieletto, D. (Creator), Edinburgh DataShare, 9 Aug 2021

  DOI: 10.7488/ds/3110

  Dataset

• Intercellular friction and motility drive orientational order in cell monolayers

  Loewe, B. (Creator), Marenduzzo, D. (Creator), Marchetti, C. M. (Creator), Chiang, M. (Creator) & Hopkins, A. (Creator), Edinburgh DataShare, 16 Sept 2024

  DOI: 10.7488/ds/7799

  Dataset

• To promote network connectivity in colloidal-rod suspensions, end with a tip

  Melaugh, G. (Creator), Charlton, S. G. V. (Creator), McCallion, B. (Creator), Marenduzzo, D. (Creator) & MacPhee, C. (Creator), Edinburgh DataShare, 1 Oct 2025

  DOI: 10.7488/ds/7905

  Dataset

• Nucleosome positions alone can be used to predict domains in yeast chromosomes

  Marenduzzo, D. (Creator), Wiese, O. (Creator) & Brackley, C. (Creator), Edinburgh DataShare, 21 Aug 2019

  DOI: 10.7488/ds/2610, https://doi.org/10.1073/pnas.1817829116

  Dataset

• Genome-wide chromosome architecture prediction reveals biophysical principles underlying gene structure

  Marenduzzo, D. (Creator), Gilbert, N. (Creator), Chiang, M. (Creator), Brackley, C. (Creator), Naughton, C. (Creator), Nozawa, R.-S. (Creator) & Battaglia, C. (Creator), Edinburgh DataShare, 22 Oct 2024

  DOI: 10.7488/ds/7821

  Dataset

• Swimming suppresses correlations in dilute suspensions of pusher microorganisms

  Skultety, V. (Creator), Marenduzzo, D. (Creator) & Morozov, A. (Creator), Edinburgh DataShare, 5 Aug 2020

  DOI: 10.7488/ds/2894, https://arxiv.org/abs/2001.01954

  Dataset

• A 1-dimensional statistical mechanics model for nucleosome positioning on genomic DNA

  Morozov, A. (Creator), Tesoro, S. (Creator), Ali, I. (Creator), Sulaiman, N. (Creator) & Marenduzzo, D. (Creator), Edinburgh DataShare, 1 Feb 2016

  DOI: 10.7488/ds/1331, http://arxiv.org/abs/1510.07257

  Dataset

• Transcription modulates chromatin dynamics and locus configuration sampling

  Forte, G. (Creator), Boyle, S. (Creator), Brackley, C. (Creator), Buckle, A. (Creator), Marenduzzo, D. (Creator) & Gilbert, N. (Creator), Edinburgh DataShare, 26 Jun 2023

  DOI: 10.7488/ds/7477

  Dataset

• Nonequilibrium chromosome looping via molecular slip links

  Marenduzzo, D. (Creator), Edinburgh DataShare, 4 Sept 2017

  DOI: 10.7488/ds/2129

  Dataset

• Data for "Mixtures of blue phase liquid crystal with simple liquids: elastic emulsions and cubic fluid cylinders"

  Stratford, K. (Creator), Lintuvuori, J. (Creator), Marenduzzo, D. (Creator) & Cates, M. (Creator), Edinburgh DataShare, 27 Jul 2018

  DOI: 10.7488/ds/2396

  Dataset

• Polymer Modelling Predicts Chromosome Reorganisation in Senescence

  Chandra, T. (Creator), Michieletto, D. (Creator), Chiang, M. (Creator), Brackley, C. (Creator), Rattanavirotkul, N. (Creator), Mohammed, H. (Creator) & Marenduzzo, D. (Creator), Edinburgh DataShare, 26 Jul 2019

  DOI: 10.7488/ds/2593

  Dataset

• Mechanisms for destabilisation of RNA viruses at air-water and liquid-liquid interfaces

  Brackley, C. (Creator), Lips, A. (Creator), Morozov, A. (Creator), Poon, W. (Creator) & Marenduzzo, D. (Creator), Edinburgh DataShare, 22 Oct 2021

  DOI: 10.7488/ds/3152

  Dataset

• Bridging-induced phase separation and loop extrusion drive noise in chromatin transcription

  Forte, G. (Creator), Brackley, C. (Creator), Gilbert, N. (Creator), Marenduzzo, D. (Creator), Chiang, M. (Creator) & Battaglia, C. (Creator), Edinburgh DataShare, 21 Nov 2025

  DOI: 10.7488/ds/7942, https://doi.org/10.48550/arXiv.2407.04907

  Dataset

• Data accompanying 'A growing bacterial colony in two dimensions as an active nematic'

  Dell'arciprete, D. (Creator), Blow, M. (Creator), Brown, A. (Creator), Farrell, F. D. (Creator), Lintuvuori, J. (Creator), McVey, A. F. (Creator), Marenduzzo, D. (Creator) & Poon, W. (Creator), Edinburgh DataShare, 24 Sept 2018

  DOI: 10.7488/ds/2444

  Dataset

• Predicting the three-dimensional folding of cis-regulatory regions in mammalian genomes using bioinformatic data and polymer models

  Brackley, C. (Creator), Brown, J. M. (Creator), Waithe, D. (Creator), Babbs, C. (Creator), Davies, J. A. (Creator), Hughes, J. R. (Creator), Buckle, V. J. (Creator) & Marenduzzo, D. (Creator), Edinburgh DataShare, 8 Jan 2016

  DOI: 10.7488/ds/1306, http://arxiv.org/pdf/1601.02822.pdf

  Dataset