Research output per year
Research output per year
- 1 - 50 out of 194 results
Search results
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2025
Oscillation in the SIRS model
Marenduzzo, D., Brown, A. T., Miller, C. W. & Ackland, G. J., 21 Aug 2025, In: Journal of Theoretical Biology. 611, p. 1-12 12 p., 112169.Research output: Contribution to journal › Article › peer-review
Open Access -
Equilibrium phases and phase transitions in multicritical magnetic polymers
Raiola, A., Locatelli, E., Marenduzzo, D. & Orlandini, E., 22 May 2025, In: Soft Matter. 20, 26, p. 5296-5311 16 p., 21.Research output: Contribution to journal › Article › peer-review
Open Access -
Bridging-mediated compaction of mitotic chromosomes
Forte, G., Boteva, L., Gilbert, N., Cook, P. R. & Marenduzzo, D., 9 May 2025, In: Nucleus. 16, 1, p. 1-10 10 p., 2497765.Research output: Contribution to journal › Review article › peer-review
Open Access -
Formation of Topological Bigels in Mixtures of Colloidal Rings and Polymers
Bonato, A., Marenduzzo, D. & Orlandini, E., 9 May 2025, In: Physical Review Letters. 134, 18, p. 1-6 6 p., 188203.Research output: Contribution to journal › Article › peer-review
Open Access -
To promote network connectivity in colloidal rod suspensions, end with a tip
Melaugh, G., Charlton, S. G. V., Mccallion, B., Marenduzzo, D. & Macphee, C. E., 17 Apr 2025, In: Physical Review E. 111, 4, p. 1-11 11 p., 045419.Research output: Contribution to journal › Article › peer-review
Open Access -
Diffusive evaporation dynamics in polymer solutions is ubiquitous
Huisman, M., Poon, W. C. K., Warren, P. B., Titmuss, S. & Marenduzzo, D., 22 Jan 2025, In: Soft Matter. 21, 8, p. 1508-1515 8 p.Research output: Contribution to journal › Article › peer-review
Open Access -
2024
A unified-field theory of genome organization and gene regulation
Negro, G., Semeraro, M., Cook, P. R. & Marenduzzo, D., 20 Dec 2024, In: iScience. 27, 12, p. 1-16 16 p., 111218.Research output: Contribution to journal › Article › peer-review
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Majorana quasiparticles and topological phases in 3D active nematics
Head, L. C., Negro, G., Carenza, L. N., Johnson, N., Keogh, R. R., Gonnella, G., Morozov, A., Orlandini, E., Shendruk, T. N., Tiribocchi, A. & Marenduzzo, D., 19 Dec 2024, In: Proceedings of the National Academy of Sciences of the United States of America. 121, 52, e2405304121.Research output: Contribution to journal › Article › peer-review
Open Access -
Multiphase field model of cells on a substrate: From three dimensional to two dimensional
Chiang, M., Hopkins, A., Loewe, B., Marenduzzo, D. & Marchetti, M. C., 17 Oct 2024, In: Physical Review E. 110, 4, p. 1-15 15 p., 044403.Research output: Contribution to journal › Article › peer-review
Open Access -
Intercellular Friction and Motility Drive Orientational Order in Cell Monolayers
Chiang, M., Hopkins, A., Loewe, B., Marchetti, M. C. & Marenduzzo, D., 1 Oct 2024, In: Proceedings of the National Academy of Sciences (PNAS). 121, 40, p. 1-7 7 p., e2319310121.Research output: Contribution to journal › Article › peer-review
Open Access -
Modeling the 3D Spatiotemporal Organization of Chromatin Replication
Forte, G., Buonomo, S., Cook, P. R., Gilbert, N., Marenduzzo, D. & Orlandini, E., 26 Sept 2024, In: PRX Life. 2, 3, 11 p., 033014.Research output: Contribution to journal › Article › peer-review
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Entangled nematic disclinations using multi-particle collision dynamics
Head, L. C., Fosado, Y. A. G., Marenduzzo, D. & Shendruk, T. N., 18 Sept 2024, In: Soft Matter. 20, 36, p. 7157-7173 17 p.Research output: Contribution to journal › Article › peer-review
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Can the AMOEBA forcefield be used for high pressure simulations? The extreme case of methane and water
Kerr, M., Ackland, G. J., Marenduzzo, D., Brandani, G. B. & Pruteanu, C. G., 7 Aug 2024, In: The Journal of Chemical Physics. 161, 5, p. 1-9 9 p., 054506.Research output: Contribution to journal › Article › peer-review
Open Access -
Combinatorics and topological weights of chromatin loop networks
Bonato, A., Chiang, M., Corbett, D., Kitaev, S., Marenduzzo, D., Morozov, A. & Orlandini, E., 14 Jun 2024, In: Physical Review E. 109, 6, p. 1-13 13 p., 064405.Research output: Contribution to journal › Article › peer-review
Open Access -
Topological Spectra and Entropy of Chromatin Loop Networks
Bonato, A., Chiang, M., Corbett, D., Kitaev, S., Marenduzzo, D., Morozov, A. & Orlandini, E., 14 Jun 2024, In: Physical Review Letters. 132, 24, p. 1-6 6 p., 248403.Research output: Contribution to journal › Article › peer-review
Open Access -
Vertebrate centromeres in mitosis are functionally bipartite structures stabilized by cohesin
Sacristan, C., Samejima, K., Ruiz, L. A., Deb, M., Lambers, M. L. A., Buckle, A., Brackley, C. A., Robertson, D., Hori, T., Webb, S., Kiewisz, R., Bepler, T., van Kwawegen, E., Risteski, P., Vukušić, K., Tolić, I. M., Müller-Reichert, T., Fukagawa, T., Gilbert, N. & Marenduzzo, D. & 2 others, , 6 Jun 2024, In: Cell. 187, 12, p. 3006-3023.e26 45 p.Research output: Contribution to journal › Article › peer-review
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2023
Bridging condensins mediate compaction of mitotic chromosomes
Forte, G., Boteva, L., Conforto, F., Gilbert, N., Cook, P. R. & Marenduzzo, D., 17 Nov 2023, In: Journal of Cell Biology. 223, 1, p. 1-14 14 p., e202209113.Research output: Contribution to journal › Article › peer-review
Open Access -
Transcription modulates chromatin dynamics and locus configuration sampling
Forte, G., Buckle, A., Boyle, S., Marenduzzo, D., Gilbert, N. & Brackley, C. A., 3 Aug 2023, In: Nature Structural & Molecular Biology. 30, 9, p. 1275-1285 23 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Shapes and dynamic regimes of a polar active fluid droplet under confinement
Tiribocchi, A., Durve, M., Lauricella, M., Montessori, A., Marenduzzo, D. & Succi, S., 2 Jun 2023, In: Physics of Fluids. 35, 6, p. 1-35 35 p., 063106.Research output: Contribution to journal › Article › peer-review
Open Access -
Yield-stress transition in suspensions of deformable droplets
Negro, G., Carenza, L. N., Gonnella, G., Mackay, F., Morozov, A. & Marenduzzo, D., 31 May 2023, In: Science Advances. 9, 22, p. 1-7 7 p., eadf8106.Research output: Contribution to journal › Article › peer-review
Open Access -
Active turbulence and spontaneous phase separation in inhomogeneous extensile active gels
Assante, R., Corbett, D., Marenduzzo, D. & Morozov, A., 4 Jan 2023, In: Soft Matter. 19, 2, p. 189-198 10 p.Research output: Contribution to journal › Article › peer-review
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2022
Topological gelation of reconnecting polymers
Bonato, A., Marenduzzo, D., Michieletto, D. & Orlandini, E., 24 Oct 2022, In: Proceedings of the National Academy of Sciences (PNAS). 119, 44, p. 1-8 8 p., e2207728119.Research output: Contribution to journal › Article › peer-review
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Predicting genome organisation and function with mechanistic modelling
Chiang, M., Brackley, C. A., Marenduzzo, D. & Gilbert, N., 1 Apr 2022, In: Trends in Genetics. 38, 4, p. 364-378 15 p.Research output: Contribution to journal › Review article › peer-review
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2021
Mechanisms for destabilisation of RNA viruses at air-water and liquid-liquid interfaces
Brackley, C. A., Lips, A., Morozov, A., Poon, W. C. K. & Marenduzzo, D., 24 Nov 2021, In: Nature Communications. 12, 1, p. 1-6 6 p., 6812.Research output: Contribution to journal › Article › peer-review
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Simplifying Topological Entanglements by Entropic Competition of Slip-Links
Bonato, A., Marenduzzo, D. & Michieletto, D., 25 Oct 2021, In: Physical Review Research. 3, 4, p. 1-9 9 p., 043070.Research output: Contribution to journal › Article › peer-review
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Complex small-world regulatory networks emerge from the 3D organisation of the human genome
Brackley, C. A., Gilbert, N., Michieletto, D., Papantonis, A., Pereira, M. C. F., Cook, P. R. & Marenduzzo, D., 1 Oct 2021, In: Nature Communications. 12, 1, p. 1-14 14 p., 5756.Research output: Contribution to journal › Article › peer-review
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Nonequilibrium dynamics and action at a distance in transcriptionally driven DNA supercoiling
Fosado, Y. A. G., Michieletto, D., Brackley, C. A. & Marenduzzo, D., 1 Mar 2021, In: Proceedings of the National Academy of Sciences (PNAS). 118, 10, p. 1-6 6 p., e1905215118.Research output: Contribution to journal › Article › peer-review
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Bridging-induced phase separation induced by cohesin SMC protein complexes
Ryu, J.-K., Bouchoux, C., Liu, H. W., Kim, E., Minamino, M., de Groot, R., Katan, A. J., Bonato, A., Marenduzzo, D., Michieletto, D., Uhlmann, F. & Dekker, C., 10 Feb 2021, In: Science Advances. 7, 7, p. 1-10 10 p., eabe5905.Research output: Contribution to journal › Article › peer-review
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2020
Swimming suppresses correlations in dilute suspensions of pusher microorganisms
Škultéty, V., Nardini, C., Stenhammar, J., Marenduzzo, D. & Morozov, A., 15 Sept 2020, In: Physical Review X. 10, 3, 031059.Research output: Contribution to journal › Article › peer-review
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Soft matter science and the COVID-19 pandemic
Poon, W. C. K., Brown, A. T., Direito, S. O. L., Hodgson, D. J. M., Nagard, L. L., Lips, A., MacPhee, C. E., Marenduzzo, D., Royer, J. R., Silva, A. F., Thijssen, J. H. J. & Titmuss, S., 2 Sept 2020, In: Soft Matter. 15 p.Research output: Contribution to journal › Article › peer-review
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Electrostatic potential between charged particles at an oil-water interface
Morozov, A., Muntz, I., Thijssen, J. H. J. & Marenduzzo, D., 31 Aug 2020, In: Physical Review E. 102, 2, 020801(R).Research output: Contribution to journal › Article › peer-review
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Pattern formation in active model C with anchoring: bands, aster networks, and foams
Maryshev, I., Morozov, A., Goryachev, A. B. & Marenduzzo, D., 19 Aug 2020, In: Soft Matter.Research output: Contribution to journal › Article › peer-review
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Interaction between Nearly Hard Colloidal Spheres at an Oil-Water Interface
Muntz, I., Waggett, F., Hunter, M., Schofield, A. B., Bartlett, P., Marenduzzo, D. & Thijssen, J. H. J., 23 Jun 2020, In: Physical Review Research. 2, 2, 023388.Research output: Contribution to journal › Article › peer-review
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Mechanistic modeling of chromatin folding to understand function
Brackey, C. A., Marenduzzo, D. & Gilbert, N., 8 Jun 2020, (E-pub ahead of print) In: Nature Methods.Research output: Contribution to journal › Review article › peer-review
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A nonequilibrium strategy for fast target search on the genome
Cagnetta, F., Michieletto, D. & Marenduzzo, D., 12 May 2020, In: Physical Review Letters. 124, 5 p., 198101.Research output: Contribution to journal › Article › peer-review
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Darcy's law without friction in active nematic rheology
MacKay, F., Toner, J., Morozov, A. & Marenduzzo, D., 4 May 2020, In: Physical Review Letters. 124, 18, 187801.Research output: Contribution to journal › Article › peer-review
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Competition between local erasure and long-range spreading of a single biochemical mark leads to epigenetic bistability
Ancona, M., Michieletto, D. & Marenduzzo, D., 20 Apr 2020, In: Physical Review E. 101, 4, 042408.Research output: Contribution to journal › Article › peer-review
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Kinetic roughening in active interfaces
Cagnetta, F., Evans, M. R. & Marenduzzo, D., 11 Mar 2020, EPJ Web of Conferences. EDP Sciences, Vol. 230. 6 p. 00001. (EPJ Web Conferences).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Bridging-induced microphase separation: photobleaching experiments, chromatin domains, and the need for active reactions.
Brackley, C. & Marenduzzo, D., 23 Jan 2020, In: Briefings in functional genomics.Research output: Contribution to journal › Article › peer-review
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2019
Magnetic Polymer Models for Epigenetics-Driven Chromosome Folding
Colì, D., Orlandini, E., Michieletto, D. & Marenduzzo, D., 26 Nov 2019, In: Physical Review E. 100, 5, 052410.Research output: Contribution to journal › Article › peer-review
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Nonequilibrium Theory of Epigenomic Microphase Separation in the Cell Nucleus
Michieletto, D., Colí, D., Marenduzzo, D. & Orlandini, E., 26 Nov 2019, In: Physical Review Letters. 123, 22-29Research output: Contribution to journal › Article › peer-review
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Pressure-induced Miscibility Increase of CH4 in H2O: A Computational Study Using Classical Potentials
Pruteanu, C., Marenduzzo, D. & Loveday, J. S., 26 Sept 2019, In: Journal of Physical Chemistry B (Soft Condensed Matter and Biophysical Chemistry). p. 8091-8095 5 p.Research output: Contribution to journal › Article › peer-review
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A simulation study of aggregation mediated by production of cohesive molecules
Melaugh, G., Marenduzzo, D., Morozov, A. & Allen, R., 23 Sept 2019, In: Soft Matter.Research output: Contribution to journal › Article › peer-review
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Polymer Modeling Predicts Chromosome Reorganization in Senescence
Chiang, M., Michieletto, D., Brackley, C. A., Rattanavirotkul, N., Mohammed, H., Marenduzzo, D. & Chandra, T., 17 Sept 2019, In: Cell Reports. 28, 12, p. P3212-3223.e6Research output: Contribution to journal › Article › peer-review
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Nucleosome positions alone can be used to predict domains in yeast chromosomes
Wiese, O., Marenduzzo, D. & Brackley, C., 15 Aug 2019, In: Proceedings of the National Academy of Sciences (PNAS).Research output: Contribution to journal › Article › peer-review
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Dynamic clustering and re-dispersion in concentrated colloid-active gel composites
Foffano, G., Lintuvuori, J. S., Stratford, K., Cates, M. & Marenduzzo, D., 26 Jul 2019, (E-pub ahead of print) In: Soft Matter.Research output: Contribution to journal › Article › peer-review
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Non-equilibrium effects of molecular motors on polymers
Foglino, M., Locatelli, E., Brackley, C., Michieletto, D., Likos, C. N. & Marenduzzo, D., 11 Jul 2019, In: Soft Matter.Research output: Contribution to journal › Article › peer-review
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Dry active turbulence in a model for microtubule-motor mixtures
Maryshev, I., Goryachev, A., Marenduzzo, D. & Morozov, A., 8 Jul 2019, (E-pub ahead of print) In: Soft Matter.Research output: Contribution to journal › Article › peer-review
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capC-MAP: software for analysis of Capture-C data
Buckle, A., Marenduzzo, D. & Brackley, C., 7 Jun 2019, In: Bioinformatics.Research output: Contribution to journal › Article › peer-review
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Transcriptional bursts in a non-equilibrium model for gene regulation by supercoiling
Ancona, M., Bentivoglio, A., Brackley, C. A., Gonnella, G. & Marenduzzo, D., 26 Apr 2019, (E-pub ahead of print) In: Biophysical Journal. 9 p.Research output: Contribution to journal › Article › peer-review
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