Research output per year
Research output per year
- 41 results
Search results
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2024
Improved gene editing and fluorescent-protein tagging in Aspergillus nidulans using a Golden Gate-based CRISPR-Cas9 plasmid system
Modaffari, D., Finlayson, A., Miao, Y., Wallace, E. W. J. & Sawin, K. E., 3 Oct 2024, (Accepted/In press) In: Wellcome Open Research . 29 p.Research output: Contribution to journal › Article
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Conserved signalling functions for Mps1, Mad1 and Mad2 in the Cryptococcus neoformans spindle checkpoint
Aktar, K., Davies, T., Leontiou, I., Clark, I., Spanos, C., Wallace, E., Tuck, L., Jeyaprakash, A. A. & Hardwick, K. G., 3 Jun 2024, In: PLoS Genetics. 20, 6, p. e1011302 29 p., e1011302.Research output: Contribution to journal › Article › peer-review
Open AccessFile -
2023
Not all exons are protein coding: Addressing a common misconception
Aspden, J. L., Wallace, E. W. J. & Whiffin, N., 12 Apr 2023, In: Cell Genomics. 3, 4, 4 p., 100296.Research output: Contribution to journal › Review article › peer-review
Open AccessFile -
mps1 and mad mutations reduce Cryptococcus neoformans titan cell viability
Aktar, K., Davies, T., Leontiou, I., Clark, I. B. N., Spanos, C., Wallace, E., Tuck, L., Jeyaprakash, A. A. & Hardwick, K. G., 9 Apr 2023, bioRxiv, 46 p.Research output: Working paper › Preprint
Open AccessFile -
Choros: Correction of sequence-based biases for accurate quantification of ribosome profiling data
Mok, A., Tunney, R., Benegas, G., Wallace, E. W. J. & Lareau, L. F., 22 Feb 2023, bioRxiv.Research output: Working paper › Preprint
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2022
Post-transcriptional control of fungal cell wall synthesis
Hall, R. & Wallace, E. W. J., 1 Dec 2022, In: The Cell Surface. 8, 12 p., 100074.Research output: Contribution to journal › Article › peer-review
Open AccessFile -
Standardization of synthetic biology tools and assembly methods for Saccharomyces cerevisiae and emerging yeast species
Malcl, K., Watts, E., Roberts, T. M., Auxillos, J. Y., Nowrouzi, B., Boll, H. O., Nascimento, C. Z. S. D., Andreou, A., Vegh, P., Donovan, S., Fragkoudis, R., Panke, S., Wallace, E., Elfick, A. & Rios-Solis, L., 19 Aug 2022, In: ACS Synthetic Biology. 11, p. 2527-2547 21 p.Research output: Contribution to journal › Review article › peer-review
Open AccessFile -
tidyqpcr: Quantitative PCR analysis in the tidyverse
Wallace, E. W. J. & Haynes, S. J., 27 Jun 2022, ELIFE SCIENCES PUBLICATIONS LTD.Research output: Other contribution
Open Access -
riboviz 2: A flexible and robust ribosome profiling data analysis and visualization workflow
Cope, A. L., Anderson, F., Favate, J., Jackson, M., Mok, A., Kurowska, A., Liu, J., MacKenzie, E., Shivakumar, V., Tilton, P., Winterbourne, S., Xue, S., Kavoussanakis, K., Lareau, L. F., Shah, P. & Wallace, E. W. J., 15 Apr 2022, In: Bioinformatics. 38, 8, p. 2358-2360 4 p., btac093.Research output: Contribution to journal › Article › peer-review
Open AccessFile -
Bringing bioinformatics to schools with the 4273pi project
Bain, S., Plaisier, H., Anderson, F., Cook, N., Crouch, K., Meagher, T. R., Ritchie, M., Wallace, E. W. J. & Barker, D., 20 Jan 2022, In: PLoS Computational Biology. 18, 1, 12 p., e1009705.Research output: Contribution to journal › Article › peer-review
Open AccessFile -
2021
The benefits of an open-science approach in student research projects
MacKenzie, E., Winterbourne, S., Anderson, F. & Wallace, E. W. J., 13 Dec 2021, In: The Biochemist. 43, 6, p. 66-73 8 p.Research output: Contribution to journal › Article
Open AccessFile -
Workshop on ribosome profiling: 1–2 July 2021
Aspden, J. & Wallace, E. W. J., 11 Oct 2021, 1 p.Research output: Other contribution
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Probing 3’UTRs as modular regulators of gene expression
Auxillos, J., Haynes, S., Jain, A., Alibert, C., Danecka, W. & Wallace, E. W. J., 12 Aug 2021, (E-pub ahead of print) bioRxiv, at Cold Spring Harbor Laboratory.Research output: Working paper › Preprint
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Yeast Ssd1 is a non-enzymatic member of the RNase II family with an alternative RNA recognition interface
Bayne, R., Jayachandran, U., Kasprowicz, O., Bresson, S., Tollervey, D., Wallace, E. W. J. & Cook, A. G., 24 Jul 2021, In: Nucleic Acids Research. 15 p., gkab615.Research output: Contribution to journal › Article › peer-review
Open AccessFile -
riboviz 2: A flexible and robust ribosome profiling data analysis and visualization workflow
Cope, A. L., Anderson, F., Favate, J., Jackson, M., Mok, A., Kurowska, A., MacKenzie, E., Shivakumar, V., Tilton, P., Winterbourne, S., Xue, S., Kavoussanakis, K., Lareau, L. F., Shah, P. & Wallace, E. W. J., 17 May 2021, bioRxiv, at Cold Spring Harbor Laboratory, 5 p.Research output: Working paper › Preprint
Open Access -
Using prototyping to choose a bioinformatics workflow management system
Jackson, M., Kavoussanakis, K. & Wallace, E. W. J., 25 Feb 2021, In: PLoS Computational Biology. 17, 2, 13 p., e1008622.Research output: Contribution to journal › Article › peer-review
Open AccessFile -
2020
Repeated evolution of inactive pseudonucleases in a fungal branch of the Dis3/RNase II family of nucleases
Ballou, E. R., Cook, A. G. & Wallace, E. W. J., 12 Dec 2020, In: Molecular Biology and Evolution. 38, 5, p. 1837-1846 10 p., msaa324.Research output: Contribution to journal › Article › peer-review
Open AccessFile -
Daily cycles of reversible protein condensation in cyanobacteria
Pattanayak, G. K., Liao, Y., Wallace, E. W. J., Budnik, B., Drummond, D. A. & Rust, M. J., 18 Aug 2020, In: Cell Reports. 32, 7, 17 p., 108032.Research output: Contribution to journal › Article › peer-review
Open AccessFile -
Quantitative global studies reveal differential translational control by start codon context across the fungal kingdom
Wallace, E. W. J., Maufrais, C., Sales Lee, J., Tuck, L., de Oliveira, L., Feuerbach, F., Moyrand, F., Natarajan, P., Madhani, H. D. & Janbon, G., 18 Mar 2020, In: Nucleic Acids Research. 48, 5, p. 2312-2331 20 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile -
2019
Scientist and parent: The bereaved parent
Wallace, E., 8 Jul 2019, In: eLIFE. 8, 2 p., e49932.Research output: Contribution to journal › Article
Open AccessFile -
2017
riboviz: analysis and visualization of ribosome profiling datasets
Carja, O., Xing, T., Wallace, E. W. J., Plotkin, J. B. & Shah, P., 25 Oct 2017, In: BMC Bioinformatics. 18, 461Research output: Contribution to journal › Article › peer-review
Open AccessFile -
Extremely fast and incredibly close: co-transcriptional splicing in budding yeast
Wallace, E. W. J. & Beggs, J. D., 2 Feb 2017, (E-pub ahead of print) In: RNA. 23, 5, p. 601-610 11 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile -
2015
Reversible, specific, active aggregates of endogenous proteins assemble upon heat stress
Wallace, E. W. J., Kear-Scott, J. L., Pilipenko, E. V., Schwartz, M. H., Laskowski, P. R., Rojek, A. E., Katanski, C. D., Riback, J. A., Dion, M. F., Franks, A. M., Airoldi, E. M., Pan, T., Budnik, B. A. & Drummond, D. A., 10 Sept 2015, In: Cell. 162, 6, p. 1287-1298 12 p.Research output: Contribution to journal › Article › peer-review
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Dying mRNA Tells a Story of Its Life
Wallace, EW. J. & Drummond, D. A., 4 Jun 2015, In: Cell. 161, 6, p. 1246 - 1248 3 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile -
Selective RNA Sequestration Mediated by a Heat-Sensing Disordered Protein Region
Drummond, D. A., Pilipenko, E., Riback, J., Scott, J., Rojek, A., Budnik, B., Wallace, E. & Katanski, C., Apr 2015, In: The FASEB Journal. 29, 1 SupplementResearch output: Contribution to journal › Article › peer-review
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Heat Shock Triggers Assembly of tRNA Synthetases into an Active Supercomplex
Riback, J., Laskowski, P., Scott, J. L., Wallace, E. WJ., Rojek, A. E., Schwartz, M. H., Sosnick, T. R. & Drummond, D. A., 2015, In: Biophysical Journal. 108, Issue 2, Supplement 1, p. 221a 1 p.Research output: Contribution to journal › Meeting abstract › peer-review
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Widespread Protein Assembly as a Stress Response
Wallace, E., Budnik, B. & Drummond, D. A., 2015, In: The FASEB Journal. 29, 1 Supplement, p. 551-563 11 p.Research output: Contribution to journal › Article › peer-review
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2014
A Nutrient-Driven tRNA Modification Alters Translational Fidelity and Genome-wide Protein Coding across an Animal Genus
Zaborske, J. M., DuMont, V. L. B., Wallace, E. W. J., Pan, T., Aquadro, C. F. & Drummond, D. A., 9 Dec 2014, In: PLoS Biology. 12, 12, 13 p., e1002015.Research output: Contribution to journal › Meeting abstract › peer-review
Open AccessFile -
A Model for the Evolution of Biological Specificity: a Cross-Reacting DNA-Binding Protein Causes Plasmid Incompatibility
Hyland, E. M., Wallace, E. WJ. & Murray, A. W., 2014, In: Journal of Bacteriology. 196, 16, p. 3002-3011 10 p.Research output: Contribution to journal › Article › peer-review
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2013
Estimating selection on synonymous codon usage from noisy experimental data
Wallace, E. WJ., Airoldi, E. M. & Drummond, D. A., 2013, In: Molecular Biology and Evolution. 30, 6, p. 1438-1453 16 p.Research output: Contribution to journal › Article › peer-review
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Randomly Connected Networks Have Short Temporal Memory
Wallace, E., Maei, H. R. & Latham, P. E., 2013, In: Neural Computation. 25, 6, p. 1408-1439 32 p.Research output: Contribution to journal › Article › peer-review
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Where is that Noise Coming from?
Wallace, E. WJ., 2013, In: Biophysical Journal. 104, 8, p. 1637-1638 2 p.Research output: Contribution to journal › Article › peer-review
Open Access -
2012
Evolutionary constraints on visual cortex architecture from the dynamics of hallucinations
Butler, T. C., Benayoun, M., Wallace, E., van Drongelen, W., Goldenfeld, N. & Cowan, J., 2012, In: Proceedings of the National Academy of Sciences (PNAS). 109, 2, p. 606-609 4 p.Research output: Contribution to journal › Article › peer-review
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Linear noise approximation is valid over limited times for any chemical system that is sufficiently large
Wallace, EWJ., Gillespie, DT., Sanft, KR. & Petzold, LR., 2012, In: Systems Biology, IET. 6, 4, p. 102-115 14 p.Research output: Contribution to journal › Article › peer-review
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2011
Emergent Oscillations in Networks of Stochastic Spiking Neurons
Wallace, E., Benayoun, M., van Drongelen, W. & Cowan, J. D., 2011, In: PLoS ONE. 6, 5, 16 p., e14804.Research output: Contribution to journal › Article › peer-review
Open Access -
2010
A simplified derivation of the Linear Noise Approximation
Wallace, E. WJ., 2010, ArXiv, 6 p.Research output: Working paper
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Avalanches in a stochastic model of spiking neurons
Benayoun, M., Cowan, J. D., van Drongelen, W. & Wallace, E., 2010, In: PLoS Computational Biology. 6, 7, 13 p., e1000846.Research output: Contribution to journal › Article › peer-review
Open Access -
Multiple routes to functionally feedforward dynamics in cortical network models.
Wallace, E. W. J., Benayoun, M., Van Drongelen, W. & Cowan, J., 2010, In: Frontiers in Neuroscience. 4Research output: Contribution to journal › Meeting abstract › peer-review
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2009
Avalanches in simple stochastic spiking network models
Wallace, E. & Benayoun, M., 2009, In: Frontiers in Systems Neuroscience.Research output: Contribution to journal › Article › peer-review
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2008
Biologically plausible statistics from a Markov model of spiking cortical networks
Benayoun, M., Wallace, E., Baker, T., Cowan, J. & Van Drongelen, W., 11 Jul 2008, In: BMC Neuroscience. 9, 2 p.Research output: Contribution to journal › Article › peer-review
Open Access -
CHANGES IN PERSISTENT LONG-RANGE TEMPORAL CORRELATIONS OF EEG DURING A SEIZURE
Benayoun, M., Wallace, E., Cowan, J., Kohrman, M. & van Drongelen, W., 2008, AES Proceedings 2008: Epilepsia Supplement 7. s7 ed. Vol. 49. p. 338-338 1 p.Research output: Chapter in Book/Report/Conference proceeding › Conference contribution