Ian Simpson

Phone+44 (0) 131 650 2747
Emailian.simpsoned.acuk
Websitehttp://www.iansimpson.me/author/isimpson/

Accepting PhD Students

Education/Academic qualification

Master of Arts, Biochemistry, University of Oxford

Award Date: 1 Jan 1999

Doctor of Philosophy (PhD), Investigating the roles of DNA methylation in mammalian X-chromosome inactivation, University of Oxford

Award Date: 1 Jan 1999

Bachelor of Arts, Biochemistry, University of Oxford

Award Date: 1 Jan 1995

External positions

Principal Researcher in Statistical Genomics and Bioinformatics, BioSS, Biomathematics & Statistics Scotland

1 Oct 2012 → 31 Mar 2018

Keywords

RC0321 Neuroscience. Biological psychiatry. Neuropsychiatry
Bioinformatics
Computational Biology
Genomics
Systems Biology
Learning and Memory
Cognition
Machine Learning
Statistical Bioinformatics

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Dive into the research topics where Ian Simpson is active. These topic labels come from the works of this person. Together they form a unique fingerprint.

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41 Article
7 Preprint
4 Poster
4 Working paper
More

The Gene Regulatory Cascade Linking Proneural Specification with Differentiation in Drosophila Sensory Neurons
Cachero, S., Simpson, T. I., zur Lage, P., Ma, L. N., Newton, F., Holohan, E. E., Armstrong, D. & Jarman, A. P., Jan 2011, In: PLoS Biology. 9, 1, e1000568.
Research output: Contribution to journal › Article › peer-review

Open Access
File
Merged consensus clustering to assess and improve class discovery with microarray data
Simpson, T. I., Armstrong, J. D. & Jarman, A. P., 3 Dec 2010, In: BMC Bioinformatics. 11, December, 12 p., 590.
Research output: Contribution to journal › Article › peer-review

Open Access
File
Bio::Homology::InterologWalk - A Perl module to build putative protein-protein interaction networks through interolog mapping
Gallone, G., Simpson, T. I., Armstrong, J. D. & Jarman, A. P., Jul 2011, In: BMC Bioinformatics. 12, July, 15 p., 289.
Research output: Contribution to journal › Article › peer-review

Open Access
File
Normal ventral telencephalic expression of Pax6 is required for normal development of thalamocortical axons in embryonic mice
Simpson, T. I., Pratt, T., Mason, J. O. & Price, D. J., Jun 2009, In: Neural Development. 4, June (2009), 18 p., 19.
Research output: Contribution to journal › Article › peer-review

Open Access
File
The significance of molecular heterogeneity in breast cancer batch correction and dataset integration
Moir, N., Pearce, D. A., Langdon, S. P. & Simpson, T. I., 26 Dec 2024, In: medrXiv.
Research output: Contribution to journal › Article

2 Active
5 Finished

Improving digital healthcare solutions with data interoperability and large language models
Simpson, I. (Principal Investigator)
F Hoffmann La Roche Ltd
1/08/24 → 30/11/28
Project: Research
Primary Annotated Resources to Advance Discovery in Genomic Medicine (PARADIGM)
Simpson, I. (Principal Investigator)
University of Exeter
1/01/23 → 31/03/28
Project: Research
Developing metagenomic approaches to study the aetiology, pathogenesis and prevalence of Bovine Respiratory Disease (BRD)
Simpson, I. (Principal Investigator)
UK-based charities
1/11/15 → 30/04/19
Project: Research
US Partnering Award: Systems Biology of Plants and Algae, from Molecular Networks to Informatics Infrastructure.
Millar, A. (Principal Investigator), Le Bihan, T. (Sponsor) & Simpson, I. (Sponsor)
BBSRC
1/06/14 → 31/05/18
Project: Research
Developing a framework for semi-automated Kappa model generation for Neuroscience research
Simpson, I. (Principal Investigator)
UK industry, commerce and public corporations
1/12/13 → 31/05/17
Project: Research

Algal phospho- and protein rhythms mass spec data
Imrie, L. (Creator), Millar, A. (Creator), Noordally, Z. (Creator), Hindle, M. (Creator), Martin, S. (Creator), Seaton, D. (Creator), Simpson, I. (Creator), Le Bihan, T. (Creator), Imrie, L. (Data Manager) & Imrie, L. (Owner), Edinburgh DataVault, 2019
DOI: 10.7488/8a96caae-db2a-42c5-9361-e366faa26e3f, https://www.ebi.ac.uk/pride/archive/
Dataset
Processed proteomic and phosphoproteomic timeseries from Ostreococcus tauri, with Gene Ontology enrichment, from "A phospho-dawn of protein modification anticipates light onset in the picoeukaryote O. tauri"
Hindle, M. M. (Creator), Martin, S. F. (Creator), Noordally, Z. (Creator), Millar, A. (Creator), Simpson, I. (Creator) & Le Bihan, T. (Creator), Zenodo, 16 Mar 2023
DOI: 10.5281/zenodo.7742118, https://dx.doi.org/10.6019/PXD001735 and 2 more links, https://dx.doi.org/10.6019/PXD001734, https://dx.doi.org/10.6019/PXD002909 (show fewer)
Dataset
Circadian rhythms study of the unicellular algae Ostreococcus tauri by shotgun proteomics (Dark adaptation, global proteomics)
Hindle, M. M. (Creator), Martin, S. F. (Creator), Noordally, Z. (Creator), Millar, A. (Creator), Simpson, I. (Creator) & Le Bihan, T. (Creator), ProteomeXchange, 1 Dec 2022
DOI: 10.6019/PXD002909, https://dx.doi.org/10.6019/PXD001735 and 2 more links, https://dx.doi.org/10.6019/PXD001734, https://doi.org/10.5281/zenodo.7742118 (show fewer)
Dataset
Circadian rhythms study of the unicellular algae Ostreococcus tauri by shotgun proteomics (LD phosphoproteomics)
Hindle, M. M. (Creator), Martin, S. F. (Creator), Noordally, Z. (Creator), Millar, A. (Creator), Simpson, I. (Creator) & Le Bihan, T. (Creator), ProteomeXchange, 1 Dec 2022
DOI: 10.6019/PXD001734, https://doi.org/10.5281/zenodo.7742118 and 2 more links, https://dx.doi.org/10.6019/PXD001735, https://dx.doi.org/10.6019/PXD002909 (show fewer)
Dataset
SFARI Genes and where to find them; classification modelling to identify genes associated with Autism Spectrum Disorder from RNA-seq data
Simpson, I. (Creator) & Navarro Torres Arpi, M. (Creator), Edinburgh DataShare, 28 Jan 2021
DOI: 10.7488/ds/2980
Dataset

AI health warning as researchers say algorithms could discriminate against patients
Simpson, T.
11/04/25
1 Media contribution
Press/Media: Research

Ian Simpson

Personal profile

Education/Academic qualification

External positions

Keywords

Fingerprint

The Gene Regulatory Cascade Linking Proneural Specification with Differentiation in Drosophila Sensory Neurons

Merged consensus clustering to assess and improve class discovery with microarray data

Bio::Homology::InterologWalk - A Perl module to build putative protein-protein interaction networks through interolog mapping

Normal ventral telencephalic expression of Pax6 is required for normal development of thalamocortical axons in embryonic mice

The significance of molecular heterogeneity in breast cancer batch correction and dataset integration

Improving digital healthcare solutions with data interoperability and large language models

Primary Annotated Resources to Advance Discovery in Genomic Medicine (PARADIGM)

Developing metagenomic approaches to study the aetiology, pathogenesis and prevalence of Bovine Respiratory Disease (BRD)

US Partnering Award: Systems Biology of Plants and Algae, from Molecular Networks to Informatics Infrastructure.

Developing a framework for semi-automated Kappa model generation for Neuroscience research

Algal phospho- and protein rhythms mass spec data

Processed proteomic and phosphoproteomic timeseries from Ostreococcus tauri, with Gene Ontology enrichment, from "A phospho-dawn of protein modification anticipates light onset in the picoeukaryote O. tauri"

Circadian rhythms study of the unicellular algae Ostreococcus tauri by shotgun proteomics (Dark adaptation, global proteomics)

Circadian rhythms study of the unicellular algae Ostreococcus tauri by shotgun proteomics (LD phosphoproteomics)

SFARI Genes and where to find them; classification modelling to identify genes associated with Autism Spectrum Disorder from RNA-seq data

AI health warning as researchers say algorithms could discriminate against patients

Ian Simpson

Personal profile

Education/Academic qualification

External positions

Keywords

Fingerprint

Research output

Projects

Datasets

Press/Media