Personal profile
Biography
I joined the MRC Human Genetics Unit as a Chancellor’s Fellow in 2014 in order to start an independent research group. We use computational methods to study the role of protein complexes in normal biological process and in human disease.
Prior to this, I was a postdoc in the group of Dr Sarah Teichmann at the MRC Laboratory of Molecular Biology and the EMBL European Bioinformatics Institute, supported by HFSP and EMBO fellowships. My postdoctoral research focused on using structural bioinformatic approaches to study protein flexibility and the structure, assembly and evolution of protein complexes.
I completed my PhD in 2009 in the group of Dr Julie Forman-Kay at the University of Toronto and the Hospital for Sick Children. My research there involved both experimental and computational characterisation of the structure and dynamics of intrinsically disordered proteins, and how these properties are related to their interactions with other proteins.
My research in a nutshell
The ultimate manifestation of biological function often involves the assembly of proteins into complexes. Recently, the emergence of new experimental and computational techniques, along with the increasing availability of diverse structural, genomic and proteomic datasets, have created huge potential for investigating protein complex structure and assembly on a large scale.
Our research can be divided into two related parts. First, we are interested in the normal biological roles of protein complex assembly. In particular, we seek to understand how assembly occurs within cells, how it is regulated, and how it contributes to biological function.
Second, we are also interested in how the location of a mutation within a protein complex, i.e. its quaternary structure context, influences its propensity to be associated with disease. Our early work strongly suggests that incorporating quaternary structural information can substantially improve methods for predicting mutation pathogenicity and prioritising causative variants.
Education/Academic qualification
Doctor of Philosophy (PhD), Structural Characterization of Disordered States of Proteins, University of Toronto
Award Date: 1 Jan 2009
Bachelor of Science, University of British Columbia
Award Date: 1 Jan 2003
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Collaborations and top research areas from the last five years
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Recurrent heterozygous PAX6 missense variants cause severe bilateral microphthalmia via predictable effects on DNA-protein interaction
Williamson, K., Hall, H. N., Owen, L., Livesey, B., Hanson, I., Adams, G. G. W., Bodek, S., Calvas, P., Castle, B., Clarke, M., Deng, A. T., Edery, P., Fisher, R., Gillessen-Kaesbach, G., Héon, E., Hurst, J., Josifova, D., Lorenz, B., McKee, S. & Meire, F. & 11 others, , 8 Nov 2019, In: Genetics in Medicine.Research output: Contribution to journal › Article › peer-review
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The Role of protein Complexes in Human Genetic Disease
Bergendahl, L., Gerasimavicius, L., Miles, J., MacDonald, L., Welburn, J. & Marsh, J., 1 Aug 2019, In: Protein Science. 28, 8Research output: Contribution to journal › Review article › peer-review
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Protein aggregation mediates stoichiometry of protein complexes in aneuploid cells
Brennan, C. M., Vaites, L. P., Wells, J. N., Santaguida, S., Paulo, J. A., Storchova, Z., Harper, J. W., Marsh, J. A. & Amon, A., 1 Aug 2019, In: Genes and Development. 33, 15-16, p. 1031-1047 17 p.Research output: Contribution to journal › Article › peer-review
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Ligand binding site structure influences the evolution of protein complex function and topology
Abrusán, G. & Marsh, J. A., 20 Mar 2018, (E-pub ahead of print) In: Cell Reports.Research output: Contribution to journal › Article › peer-review
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Evolution of condensin and cohesin complexes driven by replacement of Kite by Hawk proteins
Wells, J. N., Gligoris, T. G., Nasmyth, K. A. & Marsh, J. A., 9 Jan 2017, In: Current Biology. 27, 1, p. R17-R18 2 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile
Prizes
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Precision control of protein dosage in vivo
Wood, A. (Principal Investigator) & Marsh, J. (Co-investigator)
1/04/22 → 31/03/27
Project: Research
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Precision control of protein dosage in vivo
Unciti-Broceta, A. (Principal Investigator), Marsh, J. (Co-investigator) & Wood, A. (Co-investigator)
1/04/22 → 31/03/27
Project: Research
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PROT-STRUCT-DISEASE: Protein structure and human genetic disease: beyond the loss-of-function paradigm
Marsh, J. (Principal Investigator)
1/06/21 → 31/05/26
Project: Research
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PROT-STRUCT-DISEASE: Protein structure and human genetic disease: beyond the loss-of-function paradigm
Marsh, J. (Principal Investigator)
1/06/21 → 31/05/26
Project: Research
Datasets
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Supplementary data to "Ligand binding site structure shapes folding, assembly and degradation of homomeric protein complexes" by G. Abrusan and J.A. Marsh
Abrusan, G. (Creator) & Marsh, J. (Creator), Edinburgh DataShare, 29 Apr 2020
DOI: 10.7488/ds/2539
Dataset
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Interface size drives cotranslational assembly of protein complexes
Badonyi, M. (Creator) & Marsh, J. (Creator), Edinburgh DataShare, 14 Sept 2021
DOI: 10.7488/ds/3134, https://doi.org/10.1101/2021.05.26.445863
Dataset
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Pathogenic loss-of-function, gain-of-function and dominant-negative mutations have profoundly different effects on protein structure: implications for variant effect prediction
Livesey, B. (Creator), Marsh, J. (Creator) & Gerasimavicius, L. (Creator), Edinburgh DataShare, 22 Oct 2021
DOI: 10.7488/ds/3153, https://www.biorxiv.org/content/10.1101/2021.10.23.465554v1 and one more link, https://doi.org/10.1101/2021.10.23.465554 (show fewer)
Dataset
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Supplementary data to "Ligand binding site structure shapes allosteric signal transduction and the evolution of allostery in protein complexes" by G. Abrusan and J.A. Marsh
Marsh, J. (Creator) & Abrusan, G. (Creator), Edinburgh DataShare, 4 Feb 2019
DOI: 10.7488/ds/2493
Dataset
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Code and datasets for structural analyses in Natan et al, "Assembly in the translation milieu imposes evolutionary constraints on homomeric proteins"
Marsh, J. (Creator), Edinburgh DataShare, 10 Oct 2017
DOI: 10.7488/ds/2227
Dataset
Press/Media
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Joe Marsh comments on publication of the Periodic Table of protein complexes
10/12/15
4 items of Media coverage
Press/Media: Expert Comment