Research output per year
Research output per year
- 1 - 50 out of 102 results
Search results
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2024
Protecting infants against RSV disease: an impact and cost-effectiveness comparison of long-acting monoclonal antibodies and maternal vaccination
Hodgson, D., Wilkins, N., van Leeuwen, E., Watson, C. H., Crofts, J., Flasche, S., Jit, M. & Atkins, K. E., 4 Mar 2024, In: The Lancet Regional Health Europe. 38, 12 p., 100829.Research output: Contribution to journal › Article › peer-review
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2023
Genomic epidemiology of SARS-CoV-2 variants during the first two years of the pandemic in Colombia
Jimenez-Silva, C., Rivero, R., Douglas, J., Bouckaert, R., Villabona-Arenas, C. J., Atkins, K. E., Gastelbondo, B., Calderon, A., Guzman, C., Echeverri-De la Hoz, D., Muñoz, M., Ballesteros, N., Castañeda, S., Patiño, L. H., Ramirez, A., Luna, N., Paniz-Mondolfi, A., Serrano-Coll, H., Ramirez, J. D., Mattar, S., & 1 others, 13 Jul 2023, In: Communications Medicine. 3, 1, 12 p., 97.Research output: Contribution to journal › Article › peer-review
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Vaccination of older adults against RSV: the final pieces of the puzzle
Atkins, K. E. & Hodgson, D., 23 Mar 2023, (E-pub ahead of print) In: Clinical Infectious Diseases.Research output: Contribution to journal › Article
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Inferring the multiplicity of founder variants initiating HIV-1 infection: a systematic review and individual patient data meta-analysis
Baxter, J., Langhorne, S., Shi, T., Tully, D. C., Villabona-Arenas, C. J., Hué, S., Albert, J., Leigh Brown, A. & Atkins, K. E., 1 Feb 2023, In: The Lancet Microbe. 4, 2, p. e102-e112Research output: Contribution to journal › Article › peer-review
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2022
Optimal Respiratory Syncytial Virus intervention programmes using Nirsevimab in England and Wales
Hodgson, D., Koltai, M., Krauer, F., Flasche, S., Jit, M. & Atkins, K. E., 22 Nov 2022, In: Vaccine. 40, 49, p. 7151-7157 7 p.Research output: Contribution to journal › Article › peer-review
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Using phylogenetics to infer HIV-1 transmission direction between known transmission pairs
Villabona-Arenas, C. J., Hué, S., Baxter, J. A. C., Hall, M., Lythgoe, K. A., Bradley, J. & Atkins, K. E., 14 Sept 2022, In: Proceedings of the National Academy of Sciences (PNAS). 119, 38, p. e2210604119Research output: Contribution to journal › Article › peer-review
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Simulating respiratory disease transmission within and between classrooms to assess pandemic management strategies at schools
CMMID COVID-19 Working Group, Endo 遠藤彰, A., Uchida 内田満夫, M., Liu 刘扬, Y., Atkins, K. E., Kucharski, A. J. & Funk, S., 13 Sept 2022, In: Proceedings of the National Academy of Sciences (PNAS). 119, 37, p. e2203019119Research output: Contribution to journal › Article › peer-review
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Detection of HIV-1 transmission clusters from dried blood spots within a universal test-and-treat trial in East Africa
Pujol-Hodge, E., Salazar-Gonzalez, J. F., Ssemwanga, D., Charlebois, E., Ayieko, J., Grant, H., Liegler, T., Atkins, K., Kaleebu, P., Kamya, M. R., Petersen, M., Havlir, D. & Leigh Brown, A., 29 Jul 2022, In: Viruses. 14, 8, 18 p., 1673.Research output: Contribution to journal › Article › peer-review
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Detection of HIV-1 Transmission Clusters from Dried Blood Spots within a Universal Test-and-Treat Trial in East Africa
Pujol-Hodge, E., Salazar-Gonzalez, J. F., Ssemwanga, D., Charlebois, E. D., Ayieko, J., Grant, H. E., Liegler, T., Atkins, K. E., Kaleebu, P., Kamya, M. R., Petersen, M., Havlir, D. V. & Leigh Brown, A. J., 29 Jul 2022, In: Viruses. 14, 8, 1673.Research output: Contribution to journal › Article › peer-review
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The contribution of hospital-acquired infections to the COVID-19 epidemic in England in the first half of 2020
ISARIC4C Investigators, CMMID COVID-19 Working Group, Knight, G. M., Pham, T. M., Stimson, J., Funk, S., Jafari, Y., Pople, D., Evans, S., Yin, M., Brown, C. S., Bhattacharya, A., Hope, R., Semple, M. G., Read, J. M., Cooper, B. S. & Robotham, J. V., 18 Jun 2022, In: BMC Infectious Diseases. 22, 1, 556.Research output: Contribution to journal › Article › peer-review
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SCoVMod - a spatially explicit mobility and deprivation adjusted model of first wave COVID-19 transmission dynamics
Banks, C. J., Colman, E., Doherty, T., Tearne, O., Arnold, M., Atkins, K. E., Balaz, D., Beaunée, G., Bessell, P. R., Enright, J., Kleczkowski, A., Rossi, G., Ruget, A-S. & Kao, R. R., 26 May 2022, In: Wellcome Open Research. 7, 161, p. 1-20 161.Research output: Contribution to journal › Article › peer-review
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Transmission dynamics of SARS-CoV-2 in a strictly-Orthodox Jewish community in the UK
CMMID COVID-19 Working Group, Waites, W., Pearson, C. A. B., Gaskell, K. M., House, T., Pellis, L., Johnson, M., Gould, V., Hunt, A., Stone, N. R. H., Kasstan, B., Chantler, T., Lal, S., Roberts, C. H., Goldblatt, D., Marks, M. & Eggo, R. M., 20 May 2022, In: Scientific Reports. 12, 1, 8550.Research output: Contribution to journal › Article › peer-review
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The impact of COVID-19 vaccination in prisons in England and Wales: a metapopulation model
McCarthy, C. V., O’Mara, O., van Leeuwen, E., CMMID COVID-19 Working Group, Jit, M. & Sandmann, F., 18 May 2022, In: BMC Public Health. 22, 1, 1003.Research output: Contribution to journal › Article › peer-review
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Measuring the effects of COVID-19-related disruption on dengue transmission in southeast Asia and Latin America: a statistical modelling study
CMMID COVID-19 Working Group, 1 May 2022, In: The Lancet Infectious Diseases. 22, 5, p. 657-667 11 p.Research output: Contribution to journal › Article › peer-review
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Using high-resolution contact networks to evaluate SARS-CoV-2 transmission and control in large-scale multi-day events
Pung, R., Firth, J. A., Spurgin, L. G., Singapore CruiseSafe working group, CMMID COVID-19 Working Group, Lee, V. J. & Kucharski, A. J., 12 Apr 2022, In: Nature Communications. 13, 1, 1956.Research output: Contribution to journal › Article › peer-review
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Changes in social contacts in England during the COVID-19 pandemic between March 2020 and March 2021 as measured by the CoMix survey: A repeated cross-sectional study
Gimma, A., Munday, J. D., Wong, K. L. M., Coletti, P., van Zandvoort, K., Prem, K., CMMID COVID-19 Working Group, Klepac, P., Rubin, G. J., Funk, S., Edmunds, W. J. & Jarvis, C. I., 1 Mar 2022, In: PLoS Medicine. 19, 3, e1003907.Research output: Contribution to journal › Article › peer-review
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Comparative assessment of methods for short-term forecasts of COVID-19 hospital admissions in England at the local level
Meakin, S., Abbott, S., Bosse, N., Munday, J., Gruson, H., Hellewell, J., Sherratt, K., CMMID COVID-19 Working Group & Funk, S., 21 Feb 2022, In: BMC Medicine. 20, 1, 86.Research output: Contribution to journal › Article › peer-review
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Publisher Correction: Characterising within-hospital SARS-CoV-2 transmission events using epidemiological and viral genomic data across two pandemic waves
Sheffield COVID-19 Genomics Group, 17 Feb 2022, In: Nature Communications. 13, 1, p. 1013Research output: Contribution to journal › Comment/debate › peer-review
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SARS-CoV-2 antibodies protect against reinfection for at least 6 months in a multicentre seroepidemiological workplace cohort
the CMMID COVID-19 working group, the SpaceX COVID-19 Cohort Collaborative, Finch, E., Lowe, R., Fischinger, S., de St Aubin, M., Siddiqui, S. M., Dayal, D., Rhee, J., Beger, S., Hu, Y., Gluck, M. J., Mormann, B., Hasdianda, M. A., Musk, E. R., Alter, G., Menon, A. S., Nilles, E. J. & Kucharski, A. J., 10 Feb 2022, In: PLoS Biology. 20, 2, e3001531.Research output: Contribution to journal › Article › peer-review
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Characterising within-hospital SARS-CoV-2 transmission events using epidemiological and viral genomic data across two pandemic waves
Sheffield COVID-19 Genomics Group, 3 Feb 2022, In: Nature Communications. 13, 1, p. 671Research output: Contribution to journal › Article › peer-review
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2021
Changing socio-economic and ethnic disparities in influenza/A/H1N1 infection early in the 2009 UK epidemic: a descriptive analysis
Munday, J. D., Pebody, R., Atkins, K. E. & van Hoek, A. J., 11 Dec 2021, In: BMC Infectious Diseases. 21, 1, p. 1243Research output: Contribution to journal › Article › peer-review
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The importance of saturating density dependence for population-level predictions of SARS-CoV-2 resurgence compared with density-independent or linearly density-dependent models, England, 23 March to 31 July 2020
Nightingale, E. S., Brady, O., CMMID COVID-19 Working Group & Yakob, L., 9 Dec 2021, In: Eurosurveillance. 26, 49, 2001809.Research output: Contribution to journal › Article › peer-review
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Within and between classroom transmission patterns of seasonal influenza among primary school students in Matsumoto city, Japan
Endo, A., Uchida, M., Hayashi, N., Liu, Y., Atkins, K. E., Kucharski, A. J. & Funk, S., 16 Nov 2021, In: Proceedings of the National Academy of Sciences (PNAS). 118, 46Research output: Contribution to journal › Article › peer-review
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A cross-sectional analysis of meteorological factors and SARS-CoV-2 transmission in 409 cities across 26 countries
Sera, F., Armstrong, B., Abbott, S., Meakin, S., O’Reilly, K., von Borries, R., Schneider, R., Royé, D., Hashizume, M., Pascal, M., Tobias, A., Vicedo-Cabrera, A. M., MCC Collaborative Research Network, CMMID COVID-19 Working Group, Gasparrini, A. & Lowe, R., 13 Oct 2021, In: Nature Communications. 12, 1, 5968.Research output: Contribution to journal › Article › peer-review
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Strategies to reduce the risk of SARS-CoV-2 importation from international travellers: Modelling estimations for the United Kingdom, July 2020
Clifford, S., Quilty, B. J., Russell, T. W., Liu, Y., Chan, Y. W. D., Pearson, C. A. B., Eggo, R. M., Endo, A., CMMID COVID-19 Working Group, Flasche, S. & John Edmunds, W., 30 Sept 2021, In: Eurosurveillance. 26, 39, 2001440.Research output: Contribution to journal › Article › peer-review
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Drug resistance mutations in HIV: new bioinformatics approaches and challenges
Blassel, L., Zhukova, A., Villabona-Arenas, C. J., Atkins, K. E., Hué, S. & Gascuel, O., 28 Sept 2021, (E-pub ahead of print) In: Current Opinion in Virology. 51, p. 56-64 9 p.Research output: Contribution to journal › Review article › peer-review
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Contact tracing is an imperfect tool for controlling COVID-19 transmission and relies on population adherence
Davis, E. L., Lucas, T. C. D., Borlase, A., Pollington, T. M., Abbott, S., Ayabina, D., Crellen, T., Hellewell, J. & CMMID COVID-19 Working Group, 13 Sept 2021, (E-pub ahead of print) In: Nature Communications. 12, 1, 5412.Research output: Contribution to journal › Article › peer-review
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Estimating the impact of reopening schools on the reproduction number of SARS-CoV-2 in England, using weekly contact survey data
Munday, J. D., Jarvis, C. I., Gimma, A., Wong, K. L. M., van Zandvoort, K., CMMID COVID-19 Working Group, Funk, S. & Edmunds, W. J., 10 Sept 2021, In: BMC Medicine. 19, 1, 233.Research output: Contribution to journal › Article › peer-review
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SARS-CoV-2 infection risk during delivery of childhood vaccination campaigns: a modelling study
Procter, S. R., Abbas, K., Flasche, S., Griffiths, U., Hagedorn, B., O’Reilly, K. M., CMMID COVID-19 Working Group & Jit, M., 12 Aug 2021, In: BMC Medicine. 19, 1, 198.Research output: Contribution to journal › Article › peer-review
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Modeling the effect of vaccination on selection for antibiotic resistance in Streptococcus pneumoniae
Davies, N. G., Flasche, S., Jit, M. & Atkins, K. E., 11 Aug 2021, In: Science Translational Medicine. 13, 606Research output: Contribution to journal › Article › peer-review
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Importance of patient bed pathways and length of stay differences in predicting COVID-19 hospital bed occupancy in England
ISARIC4C Investigators, 9 Jun 2021, In: BMC Health Services Research. 21, 1, p. 566Research output: Contribution to journal › Article › peer-review
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The potential for vaccination-induced herd immunity against the SARS-CoV-2 B.1.1.7 variant
Hodgson, D., Flasche, S., CMMID COVID-19 Working Group, Jit, M. & Kucharski, A. J., 20 May 2021, In: Eurosurveillance. 26, 20Research output: Contribution to journal › Article › peer-review
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Respiratory syncytial virus seasonality and prevention strategy planning for passive immunisation of infants in low-income and middle-income countries: a modelling study
Li, Y., Hodgson, D., Wang, X., Atkins, K. E., Feikin, D. R. & Nair, H., 6 May 2021, (E-pub ahead of print) In: The Lancet Infectious Diseases.Research output: Contribution to journal › Article › peer-review
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Global and national estimates of the number of healthcare workers at high risk of SARS-CoV-2 infection
McCarthy, C. V., Sandmann, F. G. & CMMID COVID-19 Working Group, 1 May 2021, In: Journal of Hospital Infection. 111, p. 205-207 3 p.Research output: Contribution to journal › Letter › peer-review
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Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England
CMMID COVID-19 Working Group, 9 Apr 2021, In: Science (New York, N.Y.). 372, 6538Research output: Contribution to journal › Article › peer-review
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Analysis of temporal trends in potential COVID-19 cases reported through NHS Pathways England
Leclerc, Q. J., Nightingale, E. S., Abbott, S., CMMID COVID-19 Working Group & Jombart, T., 29 Mar 2021, In: Scientific Reports. 11, 1, 7106.Research output: Contribution to journal › Article › peer-review
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Implications of the school-household network structure on SARS-CoV-2 transmission under school reopening strategies in England
CMMID COVID-19 Working Group, 29 Mar 2021, In: Nature Communications. 12, 1, 1942.Research output: Contribution to journal › Article › peer-review
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The potential health and economic value of SARS-CoV-2 vaccination alongside physical distancing in the UK: a transmission model-based future scenario analysis and economic evaluation
Sandmann, F. G., Davies, N. G., Vassall, A., Edmunds, W. J., Jit, M. & Centre for the Mathematical Modelling of Infectious Diseases COVID-19 working group, 18 Mar 2021, (E-pub ahead of print) In: The Lancet Infectious Diseases. 21, 7, p. 962-974 13 p.Research output: Contribution to journal › Article › peer-review
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Increased mortality in community-tested cases of SARS-CoV-2 lineage B.1.1.7
Davies, N. G., Jarvis, C. I., CMMID COVID-19 Working Group, Edmunds, W. J., Jewell, N. P., Diaz-Ordaz, K. & Keogh, R. H., 15 Mar 2021, (E-pub ahead of print) In: Nature. 593, 7858, p. 270-274 5 p.Research output: Contribution to journal › Article › peer-review
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Quarantine and testing strategies in contact tracing for SARS-CoV-2: a modelling study
Quilty, B. J., Clifford, S., Hellewell, J., Russell, T. W., Kucharski, A. J., Flasche, S., Edmunds, W. J. & Centre for the Mathematical Modelling of Infectious Diseases COVID-19 working group, 1 Mar 2021, In: The Lancet Public Health. 6, 3, p. e175-e183Research output: Contribution to journal › Article › peer-review
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The impact of local and national restrictions in response to COVID-19 on social contacts in England: a longitudinal natural experiment
Jarvis, C. I., Gimma, A., van Zandvoort, K., Wong, K. L. M., CMMID COVID-19 Working Group & Edmunds, W. J., 19 Feb 2021, In: BMC Medicine. 19, 1, 52.Research output: Contribution to journal › Article › peer-review
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The impact of non-pharmaceutical interventions on SARS-CoV-2 transmission across 130 countries and territories
Liu, Y., Morgenstern, C., Kelly, J., Lowe, R., CMMID COVID-19 Working Group & Jit, M., 5 Feb 2021, In: BMC Medicine. 19, 1, 40.Research output: Contribution to journal › Article › peer-review
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The importance of supplementary immunisation activities to prevent measles outbreaks during the COVID-19 pandemic in Kenya
Mburu, C. N., Ojal, J., Chebet, R., Akech, D., Karia, B., Tuju, J., Sigilai, A., Abbas, K., Jit, M., Funk, S., Smits, G., van Gageldonk, P. G. M., van der Klis, F. R. M., Tabu, C., Nokes, D. J., LSHTM CMMID COVID-19 Working Group, Scott, J., Flasche, S. & Adetifa, I., 3 Feb 2021, (E-pub ahead of print) In: BMC Medicine. 19, 1, 35.Research output: Contribution to journal › Article › peer-review
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2020
Cost-effectiveness of live-attenuated influenza vaccination among school-age children
Wenzel, N. S., Atkins, K. E., van Leeuwen, E., Halloran, M. E. & Baguelin, M., 4 Dec 2020, (E-pub ahead of print) In: Vaccine.Research output: Contribution to journal › Article › peer-review
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Evaluating the next generation of RSV intervention strategies: a mathematical modelling study and cost-effectiveness analysis
Hodgson, D., Pebody, R., Panovska-Griffiths, J., Baguelin, M. & Atkins, K. E., 18 Nov 2020, In: BMC Medicine. 18, 1, p. 348Research output: Contribution to journal › Article › peer-review
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Reconstructing the early global dynamics of under-ascertained COVID-19 cases and infections
Russell, T. W., Golding, N., Hellewell, J., Abbott, S., Wright, L., Pearson, C. A. B., van Zandvoort, K., Jarvis, C. I., Gibbs, H., Liu, Y., Eggo, R. M., Edmunds, W. J. & on behalf of the CMMID COVID-19 working group, 22 Oct 2020, In: BMC Medicine. 18, 1, 332.Research output: Contribution to journal › Article › peer-review
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Routine childhood immunisation during the COVID-19 pandemic in Africa: a benefit–risk analysis of health benefits versus excess risk of SARS-CoV-2 infection
LSHTM CMMID COVID-19 Working Group, Abbas, K., Procter, S. R., van Zandvoort, K., Clark, A., Funk, S., Mengistu, T., Hogan, D., Dansereau, E., Jit, M. & Flasche, S., 17 Oct 2020, In: The Lancet Global Health. 8, 10, p. e1264-e1272Research output: Contribution to journal › Article › peer-review
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Response strategies for COVID-19 epidemics in African settings: a mathematical modelling study
van Zandvoort, K., Jarvis, C. I., Pearson, C. A. B., Davies, N. G., CMMID COVID-19 Working Group, Ratnayake, R., Russell, T. W., Kucharski, A. J., Jit, M., Flasche, S., Eggo, R. M. & Checchi, F., 14 Oct 2020, In: BMC Medicine. 18, 1, 324.Research output: Contribution to journal › Article › peer-review
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Implication of backward contact tracing in the presence of overdispersed transmission in COVID-19 outbreaks
Endo, A., Leclerc, Q. J., Knight, G. M., Medley, G. F., Atkins, K. E., Funk, S. & Kucharski, A. J., 13 Oct 2020, In: Wellcome Open Research . 5, p. 239Research output: Contribution to journal › Article › peer-review
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Changing travel patterns in China during the early stages of the COVID-19 pandemic
Gibbs, H., Liu, Y., Pearson, C. A. B., Jarvis, C. I., Grundy, C., Quilty, B. J., Diamond, C., LSHTM CMMID COVID-19 Working Group & Eggo, R. M., 6 Oct 2020, In: Nature Communications. 11, 1, 5012.Research output: Contribution to journal › Article › peer-review
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