Michael Jackson

2022

riboviz 2: A flexible and robust ribosome profiling data analysis and visualization workflow

Cope, A. L., Anderson, F., Favate, J., Jackson, M., Mok, A., Kurowska, A., Liu, J., MacKenzie, E., Shivakumar, V., Tilton, P., Winterbourne, S., Xue, S., Kavoussanakis, K., Lareau, L. F., Shah, P. & Wallace, E. W. J., 15 Apr 2022, In: Bioinformatics. 38, 8, p. 2358-2360 4 p., btac093.

Research output: Contribution to journal › Article › peer-review

Open Access

File

2021

riboviz 2: A flexible and robust ribosome profiling data analysis and visualization workflow

Cope, A. L., Anderson, F., Favate, J., Jackson, M., Mok, A., Kurowska, A., MacKenzie, E., Shivakumar, V., Tilton, P., Winterbourne, S., Xue, S., Kavoussanakis, K., Lareau, L. F., Shah, P. & Wallace, E. W. J., 17 May 2021, bioRxiv, at Cold Spring Harbor Laboratory, 5 p.

Research output: Working paper › Preprint

Open Access

Using prototyping to choose a bioinformatics workflow management system

Jackson, M., Kavoussanakis, K. & Wallace, E. W. J., 25 Feb 2021, In: PLoS Computational Biology. 17, 2, 13 p., e1008622.

Research output: Contribution to journal › Article › peer-review

Open Access

File

2020

defoe: A Spark-based Toolbox for Analysing Digital Historical Textual Data

Filgueira Vicente, R., Jackson, M., Roubickova, A., Krause, A., Ahnert, R., Hauswedell, T., Nyhan, J., Beavan, D., Hobson, T., Coll Ardanuy, M., Colavizza, G., Hetherington, J. & Terras, M., 19 Mar 2020, 2019 IEEE 15th International Conference on e-Science (e-Science). Institute of Electrical and Electronics Engineers, p. 235-242 8 p.

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Open Access

File

2015

Developing a scalable and flexible code for high-resolution DNS of two-phase flows

Bethune, I., Collis, A., Jackson, M., Naraigh, L. O. & Valluri, P., 8 Sept 2015.

Research output: Contribution to conference › Poster › peer-review

Developing a scalable and flexible code for high-resolution DNS of two-phase flows

Bethune, I., Collis, A., Jackson, M., Naraigh, L. O., Valluri, P. & Scott, D., May 2015.

Research output: Contribution to conference › Poster

Developing a scalable and flexible code for high-resolution DNS of two-phase flows

Bethune, I., Collis, A., Jackson, M., Naraigh, L. O., Valluri, P. & Scott, D., 21 Apr 2015.

Research output: Contribution to conference › Poster

2014

The Software Sustainability Institute: Changing Research Software Attitudes and Practices

Crouch, S., Chue Hong, N., Hettrick, S., Jackson, M., Pawlik, A., Sufi, S., Carr, L., De Roure, D., Goble, C. A. & Parsons, M., 4 Feb 2014, In: Computing in science & engineering. 15, 6, p. 74-80

Research output: Contribution to journal › Article

Open Access

File

Software in reproducible research: advice and best practice collected from experiences at the collaborations workshop

Sufi, S., Chue Hong, N., Hettrick, S., Antonioletti, M., Crouch, S., Hay, A., Inupakutika, D., Jackson, M., Pawlik, A., Robinson, J., Carr, L., De Roure, D., Goble, C. A. & Parsons, M., 2014, Proceedings of the ACM SIGPLAN Conference on Programming Language Design and Implementation (PLDI). New York: ACM Association for Computing Machinery, 2

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

2013

RAPPORT: running scientific high-performance computing applications on the cloud

Cohen, J., Filippis, I., Woodbridge, M., Bauer, D., Chue Hong, N., Jackson, M., Butcher, S., Colling, D., Darlington, J., Fuchs, B. & Harvey, M., 28 Jan 2013, In: Philosophical Transactions A: Mathematical, Physical and Engineering Sciences. 371, 1983, p. - 15 p., 20120073.

Research output: Contribution to journal › Article › peer-review

2012

Web Services Data Access and Integration – The Core (WS-DAI) Specification

Atkinson, M., Antonioletti, M., Jackson, M., Krause, A., Laws, S., Lynden, S., Malaika, S., Paton, N. W., Pearson, D. & Riccardi, G., 17 Apr 2012, 49 p. Open Grid Forum.

Research output: Other contribution

Web Services Data Access and Integration – The Relational Realisation (WS-DAIR) Specification

Antonioletti, M., Collins, B., Jackson, M., Krause, A., Laws, S., Lynden, S., Magowan, J., Malaika, S. & Paton, N. W., 17 Apr 2012, 47 p. Open Grid Forum.

Research output: Other contribution

Linked Data for Humanities Research - The SPQR experiment

Blanke, T., Bodard, G., Bryant, M., Dunn, S., Hedges, M., Jackson, M. & Scott, D., 2012, Digital Ecosystems Technologies (DEST), 2012 6th IEEE International Conference on. Institute of Electrical and Electronics Engineers

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

MICE online data quality

Jackson, M. & Tunnell, C., 2012, In: Journal of Physics: Conference Series. 396 Part 1

Research output: Contribution to journal › Article › peer-review

2011

An Open Source Linked Data Framework for Publishing Environmental Data under the UK Location Strategy

Shaon, A., Woolf, A., Boczek, R., Rogers, W. & Jackson, M., 25 Oct 2011, Proceedings of the Terra Cognita Workshop on Foundations, Technologies and Applications of the Geospatial Web . Grutter, R., Kolas, D., Koubarakis, M. & Pfoser, D. (eds.). CEUR Workshop Proceedings, Vol. 798.

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Distributed Data Management with OGSA-DAI

Jackson, M. J., Antonioletti, M., Dobrzelecki, B. & Chue Hong, N., 2011, Grid and Cloud Database Management. Fiore, S. & Aloisio, G. (eds.). Berlin, Heidelberg: Springer, p. 63-86 24 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2010

Integrating distributed data sources with OGSA-DAI DQP and Views

Dobrzelecki, B., Krause, A., Hume, A. C., Grant, A., Antonioletti, M., Alemu, T. Y., Atkinson, M., Jackson, M. & Theocharopoulos, E., 2010, In: Philosophical Transactions A: Mathematical, Physical and Engineering Sciences. 368, 1926, p. 4133-4145 13 p.

Research output: Contribution to journal › Article › peer-review

2009

Building bridges between islands of data – an investigation into distributed data management in the humani

Antonioletti, M., Blanke, T., Bodard, G., Hedges, M., Hume, A., Jackson, M. & Rajbhandari, S., 2009, e-Science, 2009. e-Science '09. Fifth IEEE International Conference on. Institute of Electrical and Electronics Engineers, p. 33-39 7 p.

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

2008

FilmGrid: Revolutionising Asset Management in a Film-Oriented Post-Production Environment

Mouat, A., Grant, E., Guo, X., Price, H., Palansuriya, C., Kavoussanakis, K., Dunton, L., Wendt, O., Thompson, J., Jackson, M., Parsons, M. & Trew, A., 2008.

Research output: Contribution to conference › Paper

OGSA-DAI: Middleware for Data Integration: Selected Applications

Grant, A., Antonioletti, M., Hume, A., Krause, A., Dobrzelecki, B., Jackson, M., Parsons, M., Atkinson, M. & Theocharopoulos, E., 2008, eScience, 2008. eScience '08. IEEE Fourth International Conference on. Institute of Electrical and Electronics Engineers

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

2007

Grid Enabling Your Data Resources with OGSA-DAI

Antonioletti, M., Atkinson, M., Chue Hong, N. P., Dobrzelecki, B., Hume, A. C., Jackson, M., Karasavvas, K., Krause, A., Schopf, J. M., Sugden, T. & Theocharopoulos, E., 2007, Lecture Notes in Computer Science. 4699 ed. Springer, p. 799-808 10 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

OGSA-DAI 3.0 – The Whats and the Whys

Antonioletti, M., Chue Hong, N., Hume, A., Jackson, M., Karasavvas, K., Krause, A., Schopf, J. M., Atkinson, M., Dobrzelecki, B., Illingworth, M., McDonnell, N., Parsons, M. & Theocharopoulos, E., 2007, Proceedings of the UK e-Science All Hands Meeting 2007. 8 p.

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Open Access

File

2006

Profiling OGSA-DAI Performance for Common Use Patterns

Dobrzelecki, B., Antonioletti, M., Schopf, J. M., Hume, A. C., Atkinson, M., Hong, N. P. C., Jackson, M., Karasavvas, K., Krause, A., Parsons, M., Sugden, T. & Theocharopoulos, E., 2006.

Research output: Contribution to conference › Other › peer-review

File

2005

The design and implementation of Grid database services in OGSA-DAI

Antonioletti, M., Atkinson, M., Baxter, R., Borley, A., Chue-Hong, N., Collins, B., Hardman, N., Hume, A. C., Knox, A., Jackson, M., Krause, A., Laws, S., Magowan, J., Paton, N. W., Pearson, D., Sugden, T., Watson, P. & Westhead, M., Feb 2005, In: Concurrency and Computation: Practice and Experience. 17, 2-4, p. 357-376 20 p.

Research output: Contribution to journal › Article › peer-review

A new Architecture for OGSA-DAI

Atkinson, M., Karasavvas, K., Antonioletti, M., Baxter, R., Borley, A., Chue Hong, N., Hume, A., Jackson, M., Laws, S., Paton, N. W., Schopf, J. M., Sugden, T., Tourlas, K. & Watson, P., 2005, Proceedings of the UK e-Science All Hands Meeting 2005.

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Enabling Access to Federated Grid Databases: An OGSA-DAI ODBC Driver

Jackson, M., Lloyd, A. & Sloan, T., 2005, Jackson, M., Lloyd, A. and Sloan, T. Enabling Access to Federated Grid Databases: An OGSA-DAI ODBC Driver. Proceedings of UK e-Science All Hands Meeting, Nottingham, 19th-22nd September 2005.. 7 p.

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Introduction to OGSA-DAI Services

Karasavvas, K., Antonioletti, M., Atkinson, M., Chue Hong, N., Sugden, T., Hume, A., Jackson, M., Krause, A. & Palansuriya, C., 2005, Scientific Applications of Grid Computing: First International Workshop, SAG 2004, Beijing, China, September 20-24, 2004, Revised Selected and Invited Papers. Springer, p. 1-12 12 p. (Lecture Notes in Computer Science; vol. 3458).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

OGSA-DAI Status and Benchmarks

Antonioletti, M., Atkinson, M., Baxter, R., Borley, A., Chue Hong, N., Dantressangle, P., Hume, A., Jackson, M., Karasavvas, K., Krause, A., Laws, S., Paton, N. W., Schopf, J. M., Sugden, T., Tourlas, K., Vyvyan, D. & Watson, P., 2005, Jackson, M., Lloyd, A. and Sloan, T. Enabling Access to Federated Grid Databases: An OGSA-DAI ODBC Driver. Proceedings of UK e-Science All Hands Meeting, Nottingham, 19th-22nd September 2005..

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

2004

OGSA-DAI: Two Years On in OGSA-DAI

Antonioletti, M., Atkinson, M., Baxter, R., Borley, A., Chue Hong, N., Collins, B., Davies, J., Hardman, N., Hicken, G., Hume, A., Jackson, M., Krause, A., Laws, S., Magowan, J., Nowell, J., Paton, N. W., Pearson, D., Sugden, T., Watson, P. & Westhead, M., 2004.

Research output: Contribution to conference › Paper

OGSA-DAI Status Report and Future Directions

Antonioletti, M., Atkinson, M., Baxter, R., Borley, A., Chue Hong, N., Collins, B., Davies, J., Fitzgerald, F. D., Hardman, N., Hume, A., Jackson, M., Krause, A., Laws, S., Paton, N. W., Sugden, T., Vyvyan, D., Watson, P. & Westhead, M., 2004, Proceedings of the UK e-Science All Hands Meeting 2004.

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

OGSA-DAI Usage Scenarios and Behaviour – Determining Good Practice

Antonioletti, M., Atkinson, M., Baxter, R., Borley, A., Chue Hong, N., Collins, B., Davies, J., Hardman, N., Hume, A., Jackson, M., Krause, A., Laws, S., Paton, N. W., Qi, K., Sugden, T., Vyvyan, D., Watson, P. & Westhead, M., 2004, Proceedings of the UK e-Science All Hands Meeting 2004.

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Performance Analysis of the OGSA-DAI Software

Jackson, M., Antonioletti, M., Chue Hong, N., Hume, A., Krause, A., Sugden, T. & Westhead, M., 2004, Proceedings of the UK e-Science All Hands Meeting 2004.

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Protecting Application Developers – a Client Toolkit for OGSA-DAI

Sugden, T., Antonioletti, M., Chue Hong, N., Hume, A., Jackson, M., Krause, A. & Westhead, M., 2004, Proceedings of the UK e-Science All Hands Meeting 2004.

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

2003

Anjomshoaa, A., Antonioletti, M., Atkinson, M., Baxter, R., Borley, A., Chue Hong, N., Collins, B., Hardman, N., Hicken, G., Hume, A., Jackson, M., Knox, A., Krause, A., Laws, S., Magowan, J., Palansuriya, C., Paton, N. W., Pearson, D., Sugden, T., Watson, P., & 1 othersWesthead, M., 2003, Proceedings of UK e-Science All Hands Meeting 2003.

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

2002

Engineering Mathematics Education using Java Learning Environments

Laurenson, D. I. & Jackson, M., 1 Aug 2002, Proceedings of the International Conference on Engineering Education.

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

2001

Developing and evaluating Java-based educational tools

Jackson, M., Laurenson, D. & Mulgrew, B., 2001, IEE International Symposium on Engineering Education: Innovations in Teaching, Learning and Assessment (Ref. No. 2001/046). Vol. 2. p. 26/1-26/6

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

2000

Supporting DSP Education using Java

Jackson, M., Laurenson, D. I. & Mulgrew, B., 2000, Proceedings of the First Signal Processing Education Workshop. 6 p.

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

1999

Interactive Proof Critics

Jackson, M., Ireland, A. & Reid, G., 1 Sept 1999, In: Formal Aspects of Computing. 11, 3, p. 302-325 24 p.

Research output: Contribution to journal › Special issue › peer-review

Michael Jackson

Research output

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