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  • 2019

    Annotations for Rule-Based Models

    Cavaliere, M., Danos, V., Honorato-Zimmer, R. & Waites, W., 2019, Modeling Biomolecular Site Dynamics: Methods and Protocols. Hlavacek, W. S. (ed.). New York, NY: Humana Press, p. 271-296 26 p. (Methods in Molecular Biology; vol. 1945).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • 2014

    Free Energy of Petri Nets

    Danos, V. & Garnier, I., 2014, Horizons of the Mind. A Tribute to Prakash Panangaden: Essays Dedicated to Prakash Panangaden on the Occasion of His 60th Birthday. van Breugel, F., Kashefi, E., Palamidessi, C. & Rutten, J. (eds.). Springer International Publishing, Vol. 8464. p. 268-289 22 p. (Lecture Notes in Computer Science; vol. 8464).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Kappa Rule-Based Modeling in Synthetic Biology

    Wilson-kanamori, J., Danos, V., Thomson, T. & Honorato-zimmer, R., 13 Nov 2014, Computational Methods in Synthetic Biology: Part II. Springer New York, p. 105-135 31 p. (Methods in Molecular Biology; vol. 1244).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • 2010

    Rule-Based Modeling and Model Refinement

    Murphy, E., Danos, V., Feret, J., Krivine, J. & Harmer, R., 14 Jan 2010, Elements of Computational Systems Biology. John Wiley & Sons Inc., p. 83-114 32 p. (Bioinformatics: Computational Techniques and Engineering).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • 2009

    Rule-Based Modelling and Model Perturbation

    Danos, V., Feret, J., Fontana, W., Harmer, R. & Krivine, J., 2009, Transactions on Computational Systems Biology XI. Springer Berlin Heidelberg, Vol. 5750. p. 116-137 22 p. (Lecture Notes in Computer Science; vol. 5750).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • 2006

    Determinism in the one-way model

    Danos, V. & Kashefi, E., 2006, Phys. Rev. A. 6 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

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  • Property-Driven Statistics of Biological Networks

    Bourguignon, P-Y., Danos, V., Képes, F., Smidtas, S. & Schächter, V., 2006, Transactions on Computational Systems Biology VI. Priami, C. & Plotkin, G. (eds.). Springer Berlin Heidelberg, Vol. 4220. p. 1-15 15 p. (Lecture Notes in Computer Science; vol. 4220).

    Research output: Chapter in Book/Report/Conference proceedingChapter