Research output per year
Research output per year
Project Details
Key findings
Crop and other plant growth models, at scales ranging from the cellular to the ecosystem, were safeguarded for the future by converting them to a declarative format and making them available to the plant systems biology and crop communities in XML format.
A public-access web portal (http://www.plasmo.ed.ac.uk) allows users to display and run the models, obtain documentation about them, and download detailed descriptions of the model conversion and validation processes to facilitate their own modelling activities The project has been publicised to systems biologists, crop scientists and agricultural scientists
throughout the UK, as well as to international audiences, and has attracted widespread interest.
The reiimplemented models are already being used by staff of the BBSRC Bioenergy Centre and CSBE (now SynthSys) in Edinburgh.
A public-access web portal (http://www.plasmo.ed.ac.uk) allows users to display and run the models, obtain documentation about them, and download detailed descriptions of the model conversion and validation processes to facilitate their own modelling activities The project has been publicised to systems biologists, crop scientists and agricultural scientists
throughout the UK, as well as to international audiences, and has attracted widespread interest.
The reiimplemented models are already being used by staff of the BBSRC Bioenergy Centre and CSBE (now SynthSys) in Edinburgh.
| Status | Finished |
|---|---|
| Effective start/end date | 16/09/08 → 15/09/10 |
| Links | http://www.plasmo.ed.ac.uk |
Funding
- BBSRC: £236,726.00
Fingerprint
Explore the research topics touched on by this project. These labels are generated based on the underlying awards/grants. Together they form a unique fingerprint.
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The grant is dead, long live the data - migration as a pragmatic exit strategy for research data preservation [version 1; peer review: 2 approved].
Zielinski, T., Hay, J. & Millar, A. J., 2 Jul 2019, In: Wellcome Open Research . 4, 104.Research output: Contribution to journal › Article › peer-review
Open AccessFile -
Practical steps to digital organism models, from laboratory model species to ‘Crops in silico’
Millar, A. J., Urquiza Garcia, J., Freeman, P., Hume, A., Plotkin, G. D., Sorokina, O., Zardilis, A. & Zielinski, T., 15 Apr 2019, In: Journal of Experimental Botany. 70, 9, p. 2403–2418 16 p., JEXBOT/2018/235879.Research output: Contribution to journal › Review article › peer-review
Open AccessFile -
Multiscale digital Arabidopsis predicts individual organ and whole-organism growth
Chew, Y. H., Wenden, B., Flis, A., Mengin, V., Taylor, J., Davey, C. L., Tindal, C., Thomas, H., Ougham, H. J., De Reffye, P., Stitt, M., Williams, M., Muetzelfeldt, R., Halliday, K. J. & Millar, A. J., 30 Sept 2014, In: Proceedings of the National Academy of Sciences (PNAS). 111, 39, p. E4127-E4136 10 p.Research output: Contribution to journal › Article › peer-review
Datasets
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Plant Systems Modelling database
Millar, A. (Creator), University of Edinburgh, 2009
https://fairdomhub.org/projects/129 and one more link, http://www.plasmo.ed.ac.uk (show fewer)
Dataset
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Hutton seminar: "Watching plant clock genes run the organism, to understand growth and selection in crops"
Andrew Millar (Invited speaker)
6 Jun 2018Activity: Academic talk or presentation types › Invited talk
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Plant Transport Group
Andrew Millar (Invited speaker)
7 Dec 2014Activity: Participating in or organising an event types › Participation in conference
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"Modeling Wheat under Changing Environment: Model Intercomparison and Improvement." Wheat Plant and Crop Modelling project of the AgMIP initiative
Andrew Millar (Keynote/plenary speaker)
24 Jun 2014Activity: Participating in or organising an event types › Participation in conference