Analysis and prediction in complex animal systems

2017

Tandem amplification of SCCmec can drive high level methicillin resistance in MRSA

Gallagher, L. A., Coughlan, S., Black, N. S., Lalor, P., Waters, E. M., Wee, B., Watson, M., Downing, T., Fitzgerald, J. R., Fleming, G. T. A. & O'gara, J. P., Sept 2017, In: Antimicrobial Agents and Chemotherapy. 61, 9, e00869-17.

Research output: Contribution to journal › Article › peer-review

Open Access

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2016

Use of questionnaire-based data to assess dog personality

Wiener, P. & Haskell, M. J., Nov 2016, In: Journal of Veterinary Behavior: Clinical Applications and Research. 16, p. 81-85

Research output: Contribution to journal › Article › peer-review

Open Access

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GO-FAANG meeting: a Gathering On Functional Annotation of Animal Genomes

Tuggle, C. K., Giuffra, E., White, S. N., Clarke, L., Zhou, H., Ross, P. J., Acloque, H., Reecy, J. M., Archibald, A., Bellone, R. R., Boichard, M., Chamberlain, A., Cheng, H., Crooijmans, R. P. M. A., Delany, M. E., Finno, C. J., Groenen, M. A. M., Hayes, B., Lunney, J. K. & Petersen, J. L. & 4 others, Plastow, G. S., Schmidt, C. J., Song, J. & Watson, M., 24 Jul 2016, (E-pub ahead of print) In: Animal Genetics.

Research output: Contribution to journal › Article › peer-review

Open Access

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Bovine Host Genetic Variation Influences Rumen Microbial Methane Production with Best Selection Criterion for Low Methane Emitting and Efficiently Feed Converting Hosts based on Metagenomic Gene Abundance

Roehe, R., Dewhurst, R. J., Duthie, C.-A., Rooke, J. A., McKain, N., Ross, D. W., Hyslop, J. J., Waterhouse, A., Freeman, T., Watson, M. & Wallace, R. J., 18 Feb 2016, In: PLoS Genetics. 12, 2, p. 1-20 e1005846.

Research output: Contribution to journal › Article › peer-review

Open Access

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A gene expression atlas in domestic water buffalo

Young, R., Lefevre, L., Bush, S. J., Williams, J., Gokhale, S. B., Kumar, S., Bishop, S., Archibald, A. L. & Hume, D. A., 9 Jan 2016.

Research output: Contribution to conference › Abstract

The sheep gene expression atlas project

Clark, E. L., Farquhar, I. L., McCulloch, M. B., Bush, S. J., Whitelaw, C. B., Watson, M., Summers, K. M., Archibald, A. L. & Hume, D. A., 9 Jan 2016.

Research output: Contribution to conference › Abstract

2015

Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project

The FAANG Consortium, 1 Dec 2015, In: Genome Biology. 16, 1, 57.

Research output: Contribution to journal › Article › peer-review

Open Access

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Efficiency of genomic prediction for boar taint reduction in Danish Landrace pigs

Lukić, B., Pong-Wong, R., Rowe, S. J., de Koning, D. J., Velander, I., Haley, C. S., Archibald, A. L. & Woolliams, J. A., Dec 2015, In: Animal Genetics. 46, 6, p. 607-616

Research output: Contribution to journal › Article › peer-review

Open Access

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Identification of low-confidence regions in the pig reference genome (Sscrofa10.2)

Warr, A., Robert, C., Hume, D., Archibald, A. L., Deeb, N. & Watson, M., 27 Nov 2015, In: Frontiers in Genetics. 6, 338.

Research output: Contribution to journal › Article › peer-review

Open Access

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Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome

Robert, C., Kapetanovic, R., Beraldi, D., Watson, M., Archibald, A. L. & Hume, D. A., 20 Nov 2015, In: BMC Genomics. 16, 1, p. 970

Research output: Contribution to journal › Article › peer-review

Open Access

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Ixodes scapularis and Ixodes ricinus tick cell lines respond to infection with tick-borne encephalitis virus: transcriptomic and proteomic analysis

Weisheit, S., Villar, M., Tykalová, H., Popara, M., Loecherbach, J., Watson, M., Růžek, D., Grubhoffer, L., de la Fuente, J., Fazakerley, J. K. & Bell-Sakyi, L., 20 Nov 2015, In: Parasites and Vectors. 8, 1, p. 599

Research output: Contribution to journal › Article › peer-review

Open Access

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The rumen microbial metagenome associated with high methane production in cattle

Wallace, R. J., Rooke, J. A., McKain, N., Duthie, C.-A., Hyslop, J. J., Ross, D. W., Waterhouse, A., Watson, M. & Roehe, R., 23 Oct 2015, In: BMC Genomics. 16, 1, 839.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Errors in RNA-Seq quantification affect genes of relevance to human disease

Robert, C. & Watson, M., 3 Sept 2015, In: Genome Biology. 16, 1, p. 1-16 177 (2015).

Research output: Contribution to journal › Article › peer-review

Open Access

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Third Report on Chicken Genes and Chromosomes 2015

Schmid, M., Smith, J., Burt, D. W., Aken, B. L., Antin, P. B., Archibald, A. L., Ashwell, C., Blackshear, P. J., Boschiero, C., Brown, C. T., Burgess, S. C., Cheng, H. H., Chow, W., Coble, D. J., Cooksey, A., Crooijmans, R. P. M. A., Damas, J., Davis, R. V. N., De Koning, D.-J. & Delany, M. E. & 84 others, Derrien, T., Desta, T. T., Dunn, I. C., Dunn, M., Ellegren, H., Eory, L., Erb, I., Farre, M., Fasold, M., Fleming, D., Flicek, P., Fowler, K. E., Fresard, L., Froman, D. P., Garceau, V., Gardner, P. P., Gheyas, A. A., Griffin, D. K., Groenen, M. A. M., Haaf, T., Hanotte, O., Hart, A., Hasler, J., Hedges, S. B., Hertel, J., Howe, K., Hubbard, A., Hume, D. A., Kaiser, P., Kedra, D., Kemp, S., Klopp, C., Kniel, K. E., Kuo, R., Lagarrigue, S., Lamont, S. J., Larkin, D. M., Lawal, R. A., Markland, S. M., Mccarthy, F., Mccormack, H. A., Mcpherson, M. C., Motegi, A., Muljo, S. A., Munsterberg, A., Nag, R., Nanda, I., Neuberger, M., Nitsche, A., Notredame, C., Noyes, H., O''connor, R., O''hare, E. A., Oler, A. J., Ommeh, S. C., Pais, H., Persia, M., Pitel, F., Preeyanon, L., Prieto Barja, P., Pritchett, E. M., Rhoads, D. D., Robinson, C. M., Romanov, M. N., Rothschild, M., Roux, P.-F., Schmidt, C. J., Schneider, A.-S., Schwartz, M., Searle, S. M., Skinner, M. A., Smith, C. A., Stadler, P. F., Steeves, T. E., Steinlein, C., Sun, L., Takata, M., Ulitsky, I., Wang, Q., Wang, Y., Warren, W. C., Wood, J. M. D., Wragg, D. & Zhou, H., Aug 2015, In: Cytogenetic and Genome Research. 145, 2, p. 78-179

Research output: Contribution to journal › Article › peer-review

Open Access

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Exome Sequencing: Current and Future Perspectives

Warr, A., Robert, C., Hume, D., Archibald, A., Deeb, N. & Watson, M., 2 Jul 2015, In: G3: Genes | Genomes | Genetics. 5, 8, p. 1543-1550

Research output: Contribution to journal › Article › peer-review

Open Access

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When will 'open science' become simply 'science'?

Watson, M., 19 May 2015, In: Genome Biology. 16, 1, p. 101

Research output: Contribution to journal › Comment/debate

Open Access

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poRe: an R package for the visualization and analysis of nanopore sequencing data

Watson, M., Thomson, M., Risse, J., Talbot, R., Santoyo-Lopez, J., Gharbi, K. & Blaxter, M., 1 Jan 2015, In: Bioinformatics. 31, 1, p. 114-115 2 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

poRe: an R package for the visualization and analysis of nanopore sequencing data

Watson, M., Thomson, M., Risse, J., Talbot, R., Santoyo-Lopez, J., Gharbi, K. & Blaxter, M., Jan 2015

Research output: Non-textual form › Software

The ability of the encephalitic arbovirus Semliki Forest virus to cross the blood brain barrier is determined by the charge of the E2 glycoprotein

Ferguson, M. C., Saul, S., Fragkoudis, R., Weisheit, S., Cox, J., Patabendige, A., Sherwood, K., Watson, M., Merits, A. & Fazakerley, J. K., 2015, In: Journal of Virology. 89, 15, p. 7536-7549

Research output: Contribution to journal › Article › peer-review

2014

Definition of the Cattle Killer Cell Ig-like Receptor Gene Family: Comparison with Aurochs and Human Counterparts

Sanderson, N. D., Norman, P. J., Guethlein, L. A., Ellis, S. A., Williams, C., Breen, M., Park, S. D. E., Magee, D. A., Babrzadeh, F., Warry, A., Watson, M., Bradley, D. G., MacHugh, D. E., Parham, P. & Hammond, J. A., 14 Nov 2014, In: The Journal of Immunology. 193, 12, p. 6016-6030

Research output: Contribution to journal › Article › peer-review

Open Access

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Diversity and Community Composition of Methanogenic Archaea in the Rumen of Scottish Upland Sheep Assessed by Different Methods

Snelling, T. J., Genç, B., McKain, N., Watson, M., Waters, S. M., Creevey, C. J. & Wallace, R. J., 24 Sept 2014, In: PLoS ONE. 9, 9, p. e106491

Research output: Contribution to journal › Article › peer-review

Open Access

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Induction and suppression of tick cell antiviral RNAi responses by tick-borne flaviviruses

Schnettler, E., Tykalová, H., Watson, M., Sharma, M., Sterken, M. G., Obbard, D. J., Lewis, S. H., McFarlane, M., Bell-Sakyi, L., Barry, G., Weisheit, S., Best, S. M., Kuhn, R. J., Pijlman, G. P., Chase-Topping, M. E., Gould, E. A., Grubhoffer, L., Fazakerley, J. K. & Kohl, A., 22 Jul 2014, In: Nucleic Acids Research. E-pub 22 July

Research output: Contribution to journal › Article › peer-review

Open Access

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Design and development of exome capture sequencing for the domestic pig (Sus scrofa)

Robert, C., Fuentes Utrilla, P., Troup, K., Loecherbach, J., Turner, F., Talbot, R., Archibald, A. L., Mileham, A., Deeb, N., Hume, D. A. & Watson, M., 3 Jul 2014, In: BMC Genomics. 15, 1, p. 550

Research output: Contribution to journal › Article › peer-review

Open Access

File

Illuminating the future of DNA sequencing

Watson, M., 1 Jan 2014, In: Genome Biology. 15, 2, p. 108

Research output: Contribution to journal › Comment/debate › peer-review

An avian retrovirus uses canonical expression and processing mechanisms to generate viral microRNA

Yao, Y., Smith, L. P., Nair, V. & Watson, M., Jan 2014, In: Journal of Virology. 88, 1, p. 2-9

Research output: Contribution to journal › Article › peer-review

Open Access

File

2011

Mapping resistance to bacteria and viruses in the chicken

Smith, J., Sadeyen, J. R., Paton, I. R., Fife, M. S., Howell, J., Salmon, N., Hocking, P. M., Jones, M. A., Stevens, M. P., Burt, D. W. & Kaiser, P., 2011, p. abstract W460.

Research output: Contribution to conference › Abstract

Next generation sequencing: current status and prospects

Burt, D. W., 2011, p. 41-44. 4 p.

Research output: Contribution to conference › Paper

The variance composition of broiler traits on a large commercial population

Ilska, J. J., Kranis, A., Burt, D. & Woolliams, J. A., 2011.

Research output: Contribution to conference › Abstract

2010

Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis

Dalloul, R. A., Long, J. A., Zimin, A. V., Aslam, L., Beal, K., Ann Blomberg, L., Bouffard, P., Burt, D. W., Crasta, O., Crooijmans, R. P., Cooper, K., Coulombe, R. A., De, S., Delany, M. E., Dodgson, J. B., Dong, J. J., Evans, C., Frederickson, K. M., Flicek, P. & Florea, L. & 51 others, Folkerts, O., Groenen, M. A., Harkins, T. T., Herrero, J., Hoffmann, S., Megens, H. J., Jiang, A., de Jong, P., Kaiser, P., Kim, H., Kim, K. W., Kim, S., Langenberger, D., Lee, M. K., Lee, T., Mane, S., Marcais, G., Marz, M., McElroy, A. P., Modise, T., Nefedov, M., Notredame, C., Paton, I. R., Payne, W. S., Pertea, G., Prickett, D., Puiu, D., Qioa, D., Raineri, E., Ruffier, M., Salzberg, S. L., Schatz, M. C., Scheuring, C., Schmidt, C. J., Schroeder, S., Searle, S. M., Smith, E. J., Smith, J., Sonstegard, T. S., Stadler, P. F., Tafer, H., Tu, Z. J., Van Tassell, C. P., Vilella, A. J., Williams, K. P., Yorke, J. A., Zhang, L., Zhang, H. B., Zhang, X., Zhang, Y. & Reed, K. M., Sept 2010, In: PLoS Biology. 8, 9, 21 p., e1000475.

Research output: Contribution to journal › Article › peer-review

Open Access

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Gene duplication and fragmentation in the zebra finch major histocompatibility complex

Balakrishnan, C. N., Ekblom, R., Volker, M., Westerdahl, H., Godinez, R., Kotkiewicz, H., Burt, D. W., Graves, T., Griffin, D. K., Warren, W. C. & Edwards, S. V., 2010, In: BMC Biology. 8, 29, p. 29 19 p., 29.

Research output: Contribution to journal › Article › peer-review

Open Access

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2009

Identification of chromosomal regions associated with growth and carcass traits in an F(3) full sib intercross line originating from a cross of chicken lines divergently selected on body weight

Tercic, D., Holcman, A., Dovc, P., Morrice, D. R., Burt, D. W., Hocking, P. M. & Horvat, S., Oct 2009, In: Animal Genetics. 40, 5, p. 743-748 6 p.

Research output: Contribution to journal › Article › peer-review

Quantitative trait loci associated with fatness in a broiler-layer cross

Campos, R. L. R., Nones, K., Ledur, M. C., Moura, A. S. A. M. T., Pinto, L. F. B., Ambo, M., Boschiero, C., Ruy, D. C., Baron, E. E., Ninov, K., Altenhofen, C. A. B., Silva, R. A. M. S., Rosário, M. F., Burt, D. W. & Coutinho, L. L., Oct 2009, In: Animal Genetics. 40, 5, p. 729-36 8 p.

Research output: Contribution to journal › Article › peer-review

Analysis of quatitative trait loci for age and weight at the onset of lay in a broiler x layer cross

Podisi, B. K., Knott, S., Dunn, I. C., Law, A. S., Burt, D. W. & Hocking, P. M., 2009, In: British Poultry Abstracts. 5, 1, p. 12-14 3 p.

Research output: Contribution to journal › Meeting abstract › peer-review

The cattle genome reveals its secrets

Burt, D. W., 2009, In: Journal of Biology. 8, 4, p. 36

Research output: Contribution to journal › Article › peer-review

Open Access

File

Towards the selection of chickens resistant to Salmonella and Campylobacter infections

Kaiser, P., Howell, M. M., Fife, M., Sadeyen, J. R., Salmon, N., Rothwell, L., Young, J., Poh, T. Y., Stevens, M., Smith, J., Burt, D., Swaggerty, C. & Kogut, M., 2009, In: Bulletin et Memoires de l'Academie Royale de Medecine de Belgique. 164, 1-2, p. 17-25; discussion 25-6

Research output: Contribution to journal › Article › peer-review

2008

A genome-wide linkage study in families with major depression and co-morbid unexplained swelling

Anderson, C. A., Visscher, P. M., Maclean, A., Muir, W. J., Blackwood, D. H. R., Dunnigan, M. G., Pelosi, A. J., McKee, I., Murray, V., McDonald, G., Burt, D. W. & Morrice, D. R., 5 Apr 2008, In: American Journal of Medical Genetics Part B: Neuropsychiatric Genetics. 147, 3, p. 356-362 7 p.

Research output: Contribution to journal › Article › peer-review

Whole genome comparative studies between chicken and turkey and their implications for avian genome evolution

Griffin, D. K., Robertson, L. B., Tempest, H. G., Vignal, A., Fillon, V., Crooijmans, R. P., Groenen, M. A., Deryusheva, S., Gaginskaya, E., Carre, W., Waddington, D., Talbot, R., Volker, M., Masabanda, J. S. & Burt, D. W., Apr 2008, In: BMC Genomics. 9, p. 168 168 p.

Research output: Contribution to journal › Article › peer-review

Open Access

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An epistatic QTL pair affects ovarian follicular numbers at the onset of lay in broiler breeders

Hocking, P. M., Robertson, G. W., Morrice, D. M., Law, A. S., Burt, D. W. & Wei, W. H., 2008, In: British Poultry Abstracts. 4, p. 24-25 2 p.

Research output: Contribution to journal › Article › peer-review

MIQAS - Minimal Information For QTL And Association Studies

Aerts, J., Carre, W., de Koning, D. J., Hu, Z. L., Burt, D., Law, A. & Reecy, J., 2008, p. Abstract P206.

Research output: Contribution to conference › Abstract

Analysis and prediction in complex animal systems

Research output

Search results