Research output per year
Research output per year
- 1 - 50 out of 386 results
Search results
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2019
1,25-dihydroxyvitamin D3 restrains CD4+ T cell priming ability of CD11c+ dendritic cells by upregulating expression of CD31
Saul, L., Mair, I., Ivens, A., Brown, P., Samuel, K., Campbell, J. D. M., Soong, D., Kamenjarin, N. & Mellanby, R., 28 Mar 2019, In: Frontiers in Immunology. 10, 600.Research output: Contribution to journal › Article › peer-review
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Balancing selection at a premature stop mutation in the myostatin gene underlies a recessive leg weakness syndrome in pigs
Matika, O., Robledo Sanchez, D., Pong-Wong, R., Bishop, S., Riggio, V., Finlayson, H., Lowe, N., Hoste, A. E., Walling, G. A., Del-Pozo, J., Archibald, A., Woolliams, J. & Houston, R., 30 Jan 2019, In: PLoS Genetics. 15, 1, p. 1-15 15 p., e1007759.Research output: Contribution to journal › Article › peer-review
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2018
Characterisation of the British honey bee metagenome
Regan, T., Barnett, M. W., Laetsch, D. R., Bush, S. J., Wragg, D., Budge, G. E., Highet, F., Dainat, B., De Miranda, J. R., Watson, M., Blaxter, M. & Freeman, T. C., 26 Nov 2018, In: Nature Communications. 9, 1, 13 p., 4995(2018).Research output: Contribution to journal › Article › peer-review
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Livestock 2.0 – genome editing for fitter, healthier, and more productive farmed animals
Tait-burkard, C., Doeschl-wilson, A., Mcgrew, M. J., Archibald, A. L., Sang, H. M., Houston, R. D., Whitelaw, C. B. & Watson, M., 26 Nov 2018, In: Genome Biology. 19, 1Research output: Contribution to journal › Article › peer-review
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MAGpy: a reproducible pipeline for the downstream analysis of metagenome-assembled genomes (MAGs)
Stewart, R., Auffret, M. D., Snelling, T. J., Roehe, R. & Watson, M., 10 Nov 2018, (E-pub ahead of print) In: Bioinformatics.Research output: Contribution to journal › Article › peer-review
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Genomic selection for growth traits in Pacific oyster (Crassostrea gigas): Potential of low-density marker panels for breeding value prediction
Gutierrez Silva, A., Matika, O., Bean, T. P. & Houston, R., 19 Sept 2018, In: Frontiers in Genetics. 9, 9, 391.Research output: Contribution to journal › Article › peer-review
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Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken
Bush, S. J., Freem, L., MacCallum, A. J., O'Dell, J., Wu, C., Afrasiabi, C., Psifidi, A., Stevens, M. P., Smith, J., Summers, K. M. & Hume, D. A., 7 Aug 2018, In: BMC Genomics. 19, 1, 594 (2018).Research output: Contribution to journal › Article › peer-review
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Gene Expression Response to Sea Lice in Atlantic Salmon Skin: RNA Sequencing Comparison Between Resistant and Susceptible Animals
Robledo Sanchez, D., Gutierrez Silva, A., Barria, A., Yáñez, J. M. & Houston, R., 3 Aug 2018, In: Frontiers in Genetics. 9, 10, 287.Research output: Contribution to journal › Article › peer-review
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RecBCD coordinates repair of two ends at a DNA double-strand break, preventing aberrant chromosome amplification
White, M. A., Azeroglu, B., Lopez-Vernaza, M. A., Hasan, A. M. M. & Leach, DR. F., 27 Jul 2018, In: Nucleic Acids Research. 46, 13, p. 6670-6682 13 p.Research output: Contribution to journal › Article › peer-review
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Cross-species inference of long non-coding RNAs greatly expands the ruminant transcriptome
Bush, S. J., Muriuki, C., McCulloch, M. E. B., Farquhar, I. L., Clark, E. L. & Hume, D. A., 24 Apr 2018, In: Genetics Selection Evolution. 50, 1, p. 20Research output: Contribution to journal › Article › peer-review
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Gene Duplication and Dosage Effects During The Early Emergence of C4 Photosynthesis in The Grass Genus Alloteropsis
Bianconi, M. E., Dunning, L. T., Moreno-Villena, J. J., Osborne, C. P. & Christin, P., 9 Apr 2018, In: Journal of Experimental Botany. 69, 8, p. 1967–1980 14 p.Research output: Contribution to journal › Article › peer-review
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The madness of microbiome: Attempting to find consensus “best practice” for 16S microbiome studies
Pollock, J., Glendinning, L., Wisedchanwet, T. & Watson, M., Apr 2018, In: Applied and Environmental Microbiology. 84, 8, 12 p., e02627-17 .Research output: Contribution to journal › Article › peer-review
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Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen
Stewart, R., Auffret, M. D., Warr, A., Wiser, A., Press, M., Langford, K., Liachko, I., Snelling, T. J., Dewhurst, R. J., Walker, A. W., Roehe, R. & Watson, M., 28 Feb 2018, In: Nature Communications. 9, 1, p. 1-11 11 p., 870 (2018).Research output: Contribution to journal › Article › peer-review
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Differential gene expression is not required for facultative sex allocation: a transcriptome analysis of brain tissue in the parasitoid wasp Nasonia vitripennis
Cook, N., Boulton, R. A., Green, J., Trivedi, U., Tauber, E., Pannebakker, B. A., Ritchie, M. G. & Shuker, D. M., 21 Feb 2018, In: Royal Society Open Science. 5, 2, 8 p., 171718.Research output: Contribution to journal › Article › peer-review
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Quantifying the Survival of Multiple Salmonella enterica Serovars in vivo using Massively-parallel Whole Genome Sequencing to Predict Zoonotic Risk
Vohra, P., Bugarel, M., Turner, F., Loneragan, G. H., Hope, J. C., Hopkins, J. & Stevens, M. P., Feb 2018, In: Applied and Environmental Microbiology. 84, 4, e02262-17.Research output: Contribution to journal › Article › peer-review
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C9ORF72 repeat expansion causes vulnerability of motor neurons to Ca2+-permeable AMPA receptor-mediated excitotoxicity
Selvaraj, B. T., Livesey, M. R., Zhao, C., Gregory, J. M., James, O. T., Cleary, E. M., Chouhan, A. K., Gane, A. B., Perkins, E. M., Dando, O., Lillico, S. G., Lee, Y., Nishimura, A. L., Poreci, U., Thankamony, S., Pray, M., Vasistha, N. A., Magnani, D., Borooah, S., Burr, K., & 12 others, 24 Jan 2018, In: Nature Communications. 9, 347.Research output: Contribution to journal › Article › peer-review
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Maturation of the 90S pre-ribosome requires Mrd1 dependent U3 snoRNA and 35S pre-rRNA structural rearrangements
Lackmann, F., Belikov, S., Burlacu, E., Granneman, S. & Wieslander, L., 24 Jan 2018, In: Nucleic Acids Research. 15 p.Research output: Contribution to journal › Article › peer-review
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2017
RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination
Choudhury, N. R., Heikel, G., Trubitsyna, M., Kubik, P., Nowak, J. S., Webb, S., Granneman, S., Spanos, C., Rappsilber, J., Castello, A. & Michlewski, G., 8 Nov 2017, In: BMC Biology. 15, p. 105-126 20 p., 105.Research output: Contribution to journal › Article › peer-review
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Transcriptional profile of breast muscle in heat stressed layers is similar to that of broiler chickens at control temperature
Zahoor, I., de Koning, D-J. & Hocking, P. M., 20 Sept 2017, In: Genetics Selection Evolution. 49, 1, 11 p., 69.Research output: Contribution to journal › Article › peer-review
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A high resolution atlas of gene expression in the domestic sheep (Ovis aries)
Clark, E., Bush, S., McCulloch, M., Farquhar, I., Young, R., Lefevre, L., Pridans, C., Tsang, H., Wu, C., Afrasiabi, C., Watson, M., Whitelaw, C., Freeman, T., Summers, K., Archibald, A. & Hume, D., 15 Sept 2017, In: PLoS Genetics. 13, 9, e1006997.Research output: Contribution to journal › Article › peer-review
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Tandem amplification of SCCmec can drive high level methicillin resistance in MRSA
Gallagher, L. A., Coughlan, S., Black, N. S., Lalor, P., Waters, E. M., Wee, B., Watson, M., Downing, T., Fitzgerald, J. R., Fleming, G. T. A. & O'gara, J. P., Sept 2017, In: Antimicrobial Agents and Chemotherapy. 61, 9, e00869-17.Research output: Contribution to journal › Article › peer-review
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poRe GUIs for parallel and real-time processing of MinION sequence data
Stewart, R. & Watson, M., 15 Jul 2017, In: Bioinformatics. 33, 14, p. 2207-2208Research output: Contribution to journal › Article › peer-review
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Development of a Medium Density Combined-Species SNP Array for Pacific and European Oysters (Crassostrea gigas and Ostrea edulis)
Gutierrez, A. P., Turner, F., Gharbi, K., Talbot, R., Lowe, N. R., Peñaloza, C., McCullough, M., Prodöhl, P. A., Bean, T. P. & Houston, R. D., Jul 2017, In: G3: Genes | Genomes | Genetics. 7, 7, p. 2209-2218Research output: Contribution to journal › Article › peer-review
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Aedes aegypti Piwi4 Is a Noncanonical PIWI Protein Involved in Antiviral Responses
Varjak, M., Maringer, K., Watson, M., Sreenu, V. B., Fredericks, A. C., Pondeville, E., Donald, C. L., Sterk, J., Kean, J., Vazeille, M., Failloux, A., Kohl, A., Schnettler, E. & Duprex, W. P. (ed.), 28 Jun 2017, In: mSphere. 2, 3, p. e00144-17Research output: Contribution to journal › Article › peer-review
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Specialized box C/D snoRNPs act as antisense guides to target RNA base acetylation
Sharma, S., Yang, J., van Nues, R., Watzinger, P., Kötter, P., Lafontaine, D. L. J., Granneman, S. & Entian, K-D., 24 May 2017, In: PLoS Genetics. 13, 5, 23 p., e1006804.Research output: Contribution to journal › Article › peer-review
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Differentially-expressed genes during spontaneous lytic switch of Marek’s disease virus in lymphoblastoid cell lines determined by global gene expression profiling
Mwangi, W. N., Vasoya, D., Kgosana, L. B., Watson, M. & Nair, V., 5 May 2017, In: Journal of General Virology. 98, 4, p. 779-790Research output: Contribution to journal › Article › peer-review
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RNA interference restricts Rift Valley fever virus in multiple insect systems
Dietrich, I., Jansen, S., Fall, G., Lorenzen, S., Rudolf, M., Huber, K., Heitmann, A., Schicht, S., Ndiaye, E. H., Watson, M., Castelli, I., Brennan, B., Elliott, R. M., Diallo, M., Sall, A. A., Failloux, A-B., Schnettler, E., Kohl, A. & Becker, S. C., 3 May 2017, (E-pub ahead of print) In: mSphere. 2, 3, e00090-17.Research output: Contribution to journal › Article › peer-review
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Neurons and neuronal activity control gene expression in astrocytes to regulate their development and metabolism
Hasel, P., Dando, O., Jiwaji, Z., Baxter, P., Todd, A. C., Heron, S., Márkus, N. M., Mcqueen, J., Hampton, D. W., Torvell, M., Tiwari, S. S., Mckay, S., Eraso-pichot, A., Zorzano, A., Masgrau, R., Galea, E., Chandran, S., Wyllie, D. J. A., Simpson, T. I. & Hardingham, G. E., 2 May 2017, In: Nature Communications. 8, p. 1-17 17 p., 15132.Research output: Contribution to journal › Article › peer-review
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Comparative transcriptome analysis of equine alveolar macrophages
Karagianni, A. E., Kapetanovic, R., Summers, K. M., McGorum, B. C., Hume, D. A. & Pirie, R. S., May 2017, In: Equine Veterinary Journal. 49, 3, p. 375-382Research output: Contribution to journal › Article › peer-review
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Kinetic CRAC uncovers a role for Nab3 in determining gene expression profiles during stress
Van Nues, R., Schweikert, G., de Leau, E., Selega, A., Langford, A., Franklin, R., Iosub, I., Wadsworth, P., Sanguinetti, G. & Granneman, S., 11 Apr 2017, In: Nature Communications. 8, 12.Research output: Contribution to journal › Article › peer-review
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Genotype Imputation to Improve the Cost-Efficiency of Genomic Selection in Farmed Atlantic Salmon
Tsai, H-Y., Matika, O., Hoj-Edwards, S., Antolin, R., Hamilton, A., Guy, D. R., Tinch, A. E., Gharbi, K., Stear, M. J., Taggart, J. B., Bron, J. E., Hickey, J. M. & Houston, R. D., 1 Apr 2017, In: G3: Genes | Genomes | Genetics. 7, 4, p. 1377-1383 7 p.Research output: Contribution to journal › Article › peer-review
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The diverse effects of α- and γ-tocopherol on chicken liver transcriptome
Korošec, T., Tomažin, U., Horvat, S., Keber, R. & Salobir, J., 1 Mar 2017, In: Poultry Science. 96, 3, p. 667-680 14 p.Research output: Contribution to journal › Article › peer-review
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MinIONTM nanopore sequencing of environmental metagenomes: a synthetic approach
Brown, B. L., Watson, M., Minot, S. S., Rivera, M. C. & Franklin, R. B., 24 Feb 2017, (E-pub ahead of print) In: GigaScience. 6, 3, 10 p.Research output: Contribution to journal › Article › peer-review
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Caenorhabditis monodelphis sp. n.: defining 1 the stem morphology 2 and genomics of the genus Caenorhabditis
Slos, D., Sudhaus, W., Stevens, L., Bert, W. & Blaxter, M., 23 Feb 2017, In: BMC Zoology. 2, 24Research output: Contribution to journal › Article › peer-review
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11β-hydroxysteroid dehydrogenase-1 deficiency alters the gut microbiome response to western diet
Johnson, J. S., Opiyo, M. N., Thomson, M., Gharbi, K., Seckl, J. R., Heger, A. & Chapman, K. E., Feb 2017, In: Journal of Endocrinology. 232, 2, p. 273-283Research output: Contribution to journal › Article › peer-review
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First identification of porcine parvovirus 6 in Poland
Cui, J., Fan, J., Freitas Gerber, P., Biernacka, K., Stadejek, T., Xiao, C-T. & Opriessnig, T., Feb 2017, In: Virus Genes. 53, 1, p. 100-104Research output: Contribution to journal › Article › peer-review
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Activation of gga-miR-155 by reticuloendotheliosis virus T strain and its contribution to transformation
Yao, Y., Vasoya, D., Kgosana, L., Smith, L. P., Gao, Y., Wang, X., Watson, M. & Nair, V., 22 Jan 2017, (E-pub ahead of print) In: Journal of General Virology.Research output: Contribution to journal › Article › peer-review
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The antiviral RNAi response in vector and non-vector cells against orthobunyaviruses
Dietrich, I., Shi, X., McFarlane, M., Watson, M., Blomström, A-L., Skelton, J. K., Kohl, A., Elliott, R. M. & Schnettler, E., 6 Jan 2017, (E-pub ahead of print) In: PLoS Neglected Tropical Diseases. 11, 1, e0005272.Research output: Contribution to journal › Article › peer-review
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Robust statistical modeling improves sensitivity of high-throughput RNA structure probing experiments
Selega, A., Sirocchi, C., Iosub, I., Granneman, S. & Sanguinetti, G., 1 Jan 2017, In: Nature Methods. 14, 1, p. 83-89 7 p.Research output: Contribution to journal › Article › peer-review
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2016
The incredible complexity of RNA splicing
Robert, C. & Watson, M., 30 Dec 2016, In: Genome Biology. 17, 1Research output: Contribution to journal › Article
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Comparative genomics reveals genes significantly associated with woody hosts in the plant pathogen Pseudomonas syringae
Nowell, R. W., Laue, B. E., Sharp, P. M. & Green, S., 1 Dec 2016, In: Molecular Plant Pathology. 17, 9, p. 1409-1424 16 p.Research output: Contribution to journal › Article › peer-review
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Rapid identification of bovine MHCI haplotypes in genetically divergent cattle populations Using Next-Generation Sequencing
Vasoya, D., Law, A., Motta, P., Yu, M., Muwonge, A., Cook, E., Li, X., Bryson, K., MacCallam, A., Sitt, T., Toye, P., Bronsvoort, M., Watson, M., Morrison, W. & Connelley, T., Nov 2016, In: Immunogenetics. 68, 10, p. 765-781Research output: Contribution to journal › Article › peer-review
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Serological and molecular epidemiology of canine adenovirus type 1 in red foxes (Vulpes vulpes) in the United Kingdom
Walker, D., Fee, S., Hartley, G., Learmount, J., O'Hagan, M., Meredith, A., Bronsvoort, M., Porphyre, T., Sharp, C. & Philbey, A., 31 Oct 2016, In: Scientific Reports. 6, 12 p., 36051.Research output: Contribution to journal › Article › peer-review
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Macrophage colony-stimulating factor (CSF1) controls monocyte production and maturation and the steady-state size of the liver in pigs
Sauter, K. A., Waddell, L. A., Lisowski, Z. M., Young, R., Lefevre, L., Davis, G. M., Clohisey, S. M., McCulloch, M. B., Magowan, E., Mabbott, N. A., Summers, K. M. & Hume, D. A., 9 Sept 2016, In: American Journal of Physiology - Gastrointestinal and Liver Physiology. 311, 3, p. G533-G547 15 p.Research output: Contribution to journal › Article › peer-review
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First Genome Sequences of Porcine Parvovirus 5 Strains Identified in Polish Pigs
Fan, J., Cui, J., Freitas Gerber, P., Biernacka, K., Stadejek, T. & Opriessnig, T., 1 Sept 2016, (E-pub ahead of print) In: Genome announcements. 4, 5Research output: Contribution to journal › Article › peer-review
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Identification of source and sink populations for the emergence and global spread of the East-Asia clone of Community-Associated MRSA
Ward, M., Goncheva, M., Richardson, E., McAdam, P., Raftis, E., Kearns, A., Daum, R. S., David, M. Z., Lauderdale, T. L., Edwards, G. F., Nimmo, G. R., Coombs, G. W., Huijsdens, X., Woolhouse, M. & Fitzgerald, R., 26 Jul 2016, In: Genome Biology. 17, 160.Research output: Contribution to journal › Article › peer-review
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GO-FAANG meeting: a Gathering On Functional Annotation of Animal Genomes
Tuggle, C. K., Giuffra, E., White, S. N., Clarke, L., Zhou, H., Ross, P. J., Acloque, H., Reecy, J. M., Archibald, A., Bellone, R. R., Boichard, M., Chamberlain, A., Cheng, H., Crooijmans, R. P. M. A., Delany, M. E., Finno, C. J., Groenen, M. A. M., Hayes, B., Lunney, J. K., Petersen, J. L., & 4 others, 24 Jul 2016, (E-pub ahead of print) In: Animal Genetics.Research output: Contribution to journal › Article › peer-review
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Construction and annotation of a high density SNP linkage map of the Atlantic salmon (Salmo salar) genome
Tsai, H. Y., Robledo, D., Lowe, N., Bekaert, M., Taggart, J. B., Bron, J. E. & Houston, R., 1 Jul 2016, In: G3: Genes | Genomes | Genetics. 6, 7, p. 2173-2179Research output: Contribution to journal › Article › peer-review
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Genomic evaluation, breed identification, and population structure of Guernsey cattle in North America, Great Britain, and the Isle of Guernsey
Cooper, T. A., Eaglen, S. A. E., Wiggans, G. R., Jenko, J., Huson, H. J., Morrice, D., Bichard, M., Luff, W. G. D. L. & Woolliams, J., Jul 2016, In: Journal of Dairy Science. 99, 7, p. 5508-5515Research output: Contribution to journal › Article › peer-review
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Genomic prediction of host resistance to sea lice in farmed Atlantic salmon populations
Tsai, H., Hamilton, A., Tinch, A. E., Guy, D. R., Bron, J. E., Taggart, J. B., Gharbi, K., Stear, M., Matika, O., Pong-wong, R., Bishop, S. & Houston, R. D., 29 Jun 2016, In: Genetics Selection Evolution. 48, 1, p. 1-11 11 p., 47.Research output: Contribution to journal › Article › peer-review
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