Research output per year
Research output per year
- 30 results
Search results
-
2024
Genome-wide variation study and inter-tissue communication analysis unveil regulatory mechanisms of egg-laying performance in chickens
Wang, D., Tan, L., Zhi, Y., Bu, L., Wang, Y., Wang, Z., Guo, Y., Tian, W., Xu, C., Li, D., Li, Z., Jiang, R., Han, R., Li, G., Wang, Y., Xia, D., Tian, Y., Dunn, I., Hu, X., Li, H., & 3 others, Dec 2024, In: Nature Communications. 15, 1, p. 1-18 18 p., 7069.Research output: Contribution to journal › Article › peer-review
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The DoGA consortium expression atlas of promoters and genes in 100 canine tissues
DoGA Consortium & Schoenebeck, J. J., Dec 2024, In: Nature Communications. 15, 1, p. 1-12 12 p., 9082.Research output: Contribution to journal › Article › peer-review
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Multiscale 3D genome organization underlies duck fatty liver with no adipose inflammation or serious injury
Ning, M., Song, L., Niu, X., Wang, Y., Liu, W., Hu, J., Cai, H., Song, W., Liu, L., Li, H., Gong, D., Smith, J. & Huang, Y., Jun 2024, In: International Journal of Biological Macromolecules. 271, Pt 1, p. 1-14 14 p., 132452.Research output: Contribution to journal › Article › peer-review
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MeCP2 binds to methylated DNA independently of phase separation and heterochromatin organisation
Pantier, R., Brown, M., Han, S., Paton, K., Meek, S., Montavon, T., Shukeir, N., Mchugh, T., Kelly, D., Hochepied, T., Libert, C., Jenuwein, T., Burdon, T. & Bird, A. P., 8 May 2024, In: Nature Communications. 15, 1, p. 1-14 14 p., 3880.Research output: Contribution to journal › Article › peer-review
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Effects of foetal size, sex and developmental stage on adaptive transcriptional responses of skeletal muscle to intrauterine growth restriction in pigs
Cortés Araya, Y., Cheung, S., Ho, W., Stenhouse, C., Ashworth, C., Esteves, C. & Donadeu, X., 11 Apr 2024, In: Scientific Reports. 14, p. 1-13 13 p., 8500.Research output: Contribution to journal › Article › peer-review
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Mapping the cellular landscape of Atlantic salmon head kidney by single cell and single nucleus transcriptomics
Andresen, A. M. S., Taylor, R. S., Grimholt, U., Daniels, R. R., Sun, J., Dobie, R., Henderson, N. C., Martin, S. A. M., Macqueen, D. J. & Fosse, J. H., Mar 2024, In: Fish and Shellfish Immunology. 146, p. 1-18 18 p., 109357.Research output: Contribution to journal › Article › peer-review
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Cell atlas of the Atlantic salmon spleen reveals immune cell heterogeneity and cellspecific responses to bacterial infection
Sun, J., Ruiz Daniels, R., Balic, A., Magalhaes Santos Andresen, A., Bjørgen, H., Dobie, R., Henderson, N. C., Koppang, E. O., Martin, S. A. M., Hol Fosse, J., Taylor, R. & Macqueen, D., Feb 2024, In: Fish and Shellfish Immunology. 145, p. 1-17 17 p., 109358.Research output: Contribution to journal › Article › peer-review
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A chromosome-level genome assembly of a free-living white-crowned sparrow (Zonotrichia leucophrys gambelii)
Wu, Z., Miedzinska, K., Krause, J., Perez, J., Wingfield, J. C., Meddle, S. & Smith, J., 18 Jan 2024, In: Scientific Data. 11, 1, p. 1-10 10 p., 86.Research output: Contribution to journal › Article › peer-review
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Building in vitro tools for livestock genomics: chromosomal variation within the PK15 cell line
Johnsson, M., Hickey, J. M. & Jungnickel, M. K., 11 Jan 2024, (E-pub ahead of print) In: BMC Genomics. 25, 1, p. 1-11 11 p., 49.Research output: Contribution to journal › Article › peer-review
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A compendium of genetic regulatory effects across pig tissues
PigGTEx Consortium, Jan 2024, In: Nature Genetics. 56, 1, p. 112-123Research output: Contribution to journal › Article › peer-review
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Delineation of chicken immune markers in the era of omics and multicolour flow cytometry
Härtle, S., Sutton, K., Vervelde, L. & Dalgaard, T. S., 2024, In: Frontiers in Veterinary Science. 11, p. 1-19 19 p.Research output: Contribution to journal › Article › peer-review
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Innovative construction of the first reliable catalog of bovine circular RNAs
Robic, A., Hadlich, F., Monteiro Moreira, G. C., Clark, E., Plastow, G., Charlier, C. & Kuhn, C., 2024, In: Rna biology. 21, 1, p. 52-74 22 p.Research output: Contribution to journal › Article › peer-review
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Transitioning from Triton X-100 to Tergitol 15-S-9: impacts on diagnostic assays using viral PCR sample solution
Zorzoli, A., MacLean, A., Nicholson, S., Daniels, A., Hughes, S., Bennet-Slater, S., Tait-Burkard, C., Sakka, N. E., Gunson, R. & Templeton, K., 2024, In: Biotechniques. 76, 7, p. 295-298 4 p.Research output: Contribution to journal › Article › peer-review
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2023
Selection on the promoter regions plays an important role in complex traits during duck domestication
Yin, Z-T., Li, X-Q., Sun, Y-X., Smith, J., Hincke, M., Yang, N. & Hou, Z-C., 21 Dec 2023, (E-pub ahead of print) In: BMC Biology. p. 1-19 19 p., 303.Research output: Contribution to journal › Article › peer-review
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A chromosome-level genome assembly for the Silkie chicken resolves complete sequences for key chicken metabolic, reproductive, and immunity genes
Zhu, F., Yin, Z-T., Zhao, Q-S., Sun, Y-X., Jie, Y-C., Smith, J., Yang, Y-Z., Burt, D. W., Hincke, M., Zhang, Z-D., Yuan, M-D., Kaufman, J., Sun, C-J., Li, J-Y., Shao, L-W., Yang, N. & Hou, Z-C., Dec 2023, In: Communications Biology. 6, 1, p. 1-15 15 p., 1233.Research output: Contribution to journal › Article › peer-review
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Cellular heterogeneity of the developing worker honey bee (Apis mellifera) pupa: a single cell transcriptomics analysis: Honeybee cell heterogeneity during development
Patir, A., Raper, A., Fleming, R., Henderson, B., Murphy, L., Henderson, N. C., Clark, E., Freeman, T. & Barnett, M., 30 Sept 2023, In: G3: Genes | Genomes | Genetics. 13, 10, p. 1-13 13 p., jkad178.Research output: Contribution to journal › Article › peer-review
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A versatile nuclei extraction protocol for single nucleus sequencing in non-model species – optimization in various Atlantic salmon tissues
Ruiz Daniels, R., Taylor, R., Dobie, R., Salisbury, S., Furniss, J., Clark, E., Macqueen, D. & Robledo, D., Sept 2023, In: PLoS ONE. 18, 9, p. 1-9 9 p.Research output: Contribution to journal › Article › peer-review
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Association between blood miR-26a levels following artificial insemination and pregnancy outcome in dairy cattle
Tzelos, T., Lee, S., Pegg, A. & Donadeu, X., Aug 2023, In: PLoS ONE. 18, 8, p. 1-11 11 p., e0289342.Research output: Contribution to journal › Article › peer-review
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Improving the annotation of the cattle genome by annotating transcription start sites in a diverse set of tissues and populations using CAGE sequencing
Salavati, M., Clark, R., Becker, D., Kühn, C., Plastow, G. S., Dupont, S., Moreira, G. C. M., Charlier, C. & Clark, E., Aug 2023, In: G3: Genes | Genomes | Genetics. 13, 8, p. 1-38 38 p., jkad108.Research output: Contribution to journal › Article › peer-review
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High-Resolution Genotyping of Expressed Equine MHC Reveals a Highly Complex MHC Structure
Vasoya, D., Tzelos, T., Benedictus, L., Karagianni, A., Pirie, S., Marr, C., Oddsdottir, C., Fintl, C. & Connelley, T., 10 Jul 2023, In: Genes. 14, 7, p. 1-30 30 p., 1422.Research output: Contribution to journal › Article › peer-review
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Association of plasma miRNAs with early life performance and aging in dairy cattle
MacLeay, M., Banos, G. & Donadeu, X., Jul 2023, In: PLoS ONE. 18, 7, p. 1-18 18 p., e0288343.Research output: Contribution to journal › Article › peer-review
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Conserved and divergent arms of the antiviral response in the duplicated genomes of salmonid fishes
Clark, T. C., Naseer, S., Gundappa, M. K., Laurent, A., Perquis, A., Collet, B., Macqueen, D. J., Martin, S. A. M. & Boudinot, P., Jul 2023, In: Genomics. 115, 4, p. 1-13 13 p., 110663.Research output: Contribution to journal › Article › peer-review
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Livestock phenomics and genetic evaluation approaches in Africa: current state and future perspectives
Houaga, I., Mrode, R., Opoola, O., Mizeck G.G, C., Mwai, O. A., Rege, J. E. O., Olori, V. E., Nash, O., Banga, C., Okeno, T. O. & Djikeng, A., 8 Jun 2023, (E-pub ahead of print) In: Frontiers in Genetics. 14, p. 1-13 13 p.Research output: Contribution to journal › Article › peer-review
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CAGE sequencing reveals CFTR-dependent dysregulation of type I IFN signaling in activated cystic fibrosis macrophages
Gillan, J. L., Chokshi, M., Hardisty, G. R., Clohisey Hendry, S., Prasca-Chamorro, D., Robinson, N. J., Lasota, B., Clark, R., Murphy, L., Whyte, M. K. B., Baillie, J. K., Davidson, D. J., Bao, G. & Gray, R. D., 26 May 2023, In: Science Advances. 9, 21, p. 1-17 17 p., eadg5128.Research output: Contribution to journal › Article › peer-review
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Profiling the immune epigenome across global cattle breeds
Powell, J., Talenti, A., Fisch, A., Hemmink, H., Paxton, E., Toye, P., Santos, I., Ferreira, B. R., Connelley, T., Morrison, L. & Prendergast, J., 22 May 2023, In: Genome Biology. 24, p. 1-31 31 p., 127.Research output: Contribution to journal › Article › peer-review
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Phenome-wide analyses identify an association between the parent-of-origin effects dependent methylome and the rate of aging in humans
Gao, C., Amador, C., Walker, R., Campbell, A., Madden, R., Adams, M. J., Bai, X., Liu, Y., Li, M., Hayward, C., Porteous, D. J., Shen, X., Evans, K. L., Haley, C. S., McIntosh, A. M., Navarro, P. & Zeng, Y., 15 May 2023, In: Genome Biology. 24, p. 1-28 28 p., 117.Research output: Contribution to journal › Article › peer-review
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nf-core/isoseq: Simple gene and isoform annotation with PacBio Iso-Seq long-read sequencing
Guizard, S., Miedzinska, K., Smith, J., Smith, J., Kuo, R., Davey, M. & Watson, M., 4 May 2023, In: Bioinformatics. 39, 5, p. 1-2 2 p., 24323.Research output: Contribution to journal › Article › peer-review
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The transcriptome of chicken migratory primordial germ cells reveals intrinsic sex differences and hallmark germ cell genes
Doddamani, D., Woodcock, M., Taylor, L., Nandi, S., McTeir, L., Davey, M., Smith, J. & McGrew, M., 13 Apr 2023, In: Cells. 12, 8, p. 1-15 15 p., 1151.Research output: Contribution to journal › Article › peer-review
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RNA-Seq profiling between commercial and indigenous Iranian chickens highlights differences in innate immune gene expression
Sadr, A. S., Nassiri, M. R., Ghaderi-Zefrehei, M., Heidari, M., Smith, J. & Dolatabady, M. M., Apr 2023, In: Genes. 14, 4, p. 1-15 14 p., 793.Research output: Contribution to journal › Article › peer-review
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Defining the pig microglial transcriptome reveals its core signature, regional heterogeneity, and similarity with human and rodent microglia: Pig microglial transcriptome signature
Shih, B., Brown, S., Barrington, J., Lefevre, L., Mabbott, N., Priller, J., Thompson, G., Lawrence, A. & McColl, B. W., Feb 2023, In: Glia. 71, 2, p. 334-349Research output: Contribution to journal › Article › peer-review
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