Putting genomic surveillance at the heart of viral epidemic response.

Rambaut, Andrew (Principal Investigator)

School of Biological Sciences

Status	Finished
Effective start/end date	1/08/17 → 31/07/24

Funding

UK-based charities: £1,721,712.00

35 Article
3 Review article

Integrating dynamical modeling and phylogeographic inference to characterize global influenza circulation
Parino, F., Gustani-Buss, E., Bedford, T., Suchard, M. A., Trovão, N. S., Rambaut, A., Colizza, V., Poletto, C. & Lemey, P., Jan 2025, In: PNAS Nexus. 4, 1, 12 p., pgae561.
Research output: Contribution to journal › Article › peer-review

Open Access
File
Automated detection and classification of polioviruses from nanopore sequencing reads using piranha
O'Toole, Á., Colquhoun, R., Ansley, C., Troman, C., Maloney, D., Vance, Z., Akello, J., Bujaki, E., Majumdar, M., Khurshid, A., Arshad, Y., Alam, M. M., Martin, J., Shaw, A. G., Grassly, N. C. & Rambaut, A., Mar 2024, In: Virus Evolution. 10, 1, p. veae023 12 p.
Research output: Contribution to journal › Article › peer-review

Open Access
File
APOBEC3 deaminase editing in mpox virus as evidence for sustained human transmission since at least 2016
O'Toole, Á., Neher, R. A., Ndodo, N., Borges, V., Gannon, B., Gomes, J. P., Groves, N., King, D. J., Maloney, D., Lemey, P., Lewandowski, K., Loman, N., Myers, R., Omah, I. F., Suchard, M. A., Worobey, M., Chand, M., Ihekweazu, C., Ulaeto, D. & Adetifa, I. & 1 others, Rambaut, A., 3 Nov 2023, In: Science (New York, N.Y.). 382, 6670, p. 595-600 6 p.
Research output: Contribution to journal › Article › peer-review

Open Access
File

ARTIC RSV amplicon sequencing reveals global RSV genotype dynamics
Maloney, D. (Creator), Fernandes, G. (Creator), Jasim, S. (Creator), Williams, T. (Creator), Namugenyi, S. (Creator), Carr, M. (Creator), Meyer, J. R. (Creator), Sharma, A. (Creator), Marshal, L. (Creator), Nunley, B. E. (Creator), Xie, H. (Creator), Carvajal, M. (Creator), Kunerth, H. D. (Creator), Tanmoy, A. (Creator), O'Toole, Á. (Creator), Weixler, A. (Creator), Lanter, K. (Creator), Gonzalez, G. (Creator), Sereewit, J. (Creator), Guevara, R. (Creator), Loose, M. (Creator), Fanning, P. M. (Creator), Benítez, D. (Creator), Fernandez, J. C. (Creator), Cárdenas, P. (Creator), Hare, D. (Creator), Greninger, A. (Creator), Williams, T. (Creator), Nebbai, G. (Creator), Fries, A. C. (Creator), McClure, P. (Creator), Roychoudhury, P. (Creator), Wang, X. (Creator), Saha, S. (Creator), Dewar, R. (Creator), Templeton, K. (Creator), Rambaut, A. (Creator), Sarah, N. (Creator), Mateo, C. (Creator), Amelia, W. (Creator), Gabrial, G. (Creator), Rommel, G. (Creator), Padraic, F. M. (Creator), Carlos, F. J. (Creator), Paúl, C. (Creator), Daniel, H. (Creator), Alex, G. (Creator), Patrick, M. (Creator), Pavitra, R. (Creator), Xiong, W. (Creator), Senjuti, S. (Creator) & Rebecca, D. (Creator), Zenodo, 3 Jun 2025
DOI: 10.5281/zenodo.15584856
Dataset