The evolutionary dynamics of pathogen emergence and establishment: from Reservoir Detection to Outbreak Control

Project Details

StatusFinished
Effective start/end date1/08/1731/07/23

Funding

  • EU government bodies: £233,465.00

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  • Genomics-informed outbreak investigations of SARS-CoV-2 using civet

    O'Toole, Á., Hill, V., Jackson, B., Dewar, R., Sahadeo, N., Colquhoun, R., Rooke, S., McCrone, J. T., Duggan, K., McHugh, M. P., Nicholls, S. M., Poplawski, R., Aanensen, D., Holden, M., Connor, T., Loman, N., Goodfellow, I., Carrington, C. V. F., Templeton, K. & Rambaut, A., 9 Dec 2022, In: PLOS Global Public Health . 2, 12, 15 p., e0000704.

    Research output: Contribution to journalArticlepeer-review

    Open Access
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  • Context-specific emergence and growth of the SARS-CoV-2 Delta variant

    McCrone, J. T., Hill, V., Bajaj, S., Pena, R. E., Lambert, B. C., Inward, R., Bhatt, S., Volz, E., Ruis, C., Dellicour, S., Baele, G., Zarebski, A. E., Sadilek, A., Wu, N., Schneider, A., Ji, X., Raghwani, J., Jackson, B., Colquhoun, R., O'Toole, Á., & 20 othersPeacock, T. P., Twohig, K., Thelwall, S., Dabrera, G., Myers, R., Faria, N. R., Huber, C., Bogoch, I. I., Khan, K., du Plessis, L., Barrett, J. C., Aanensen, D. M., Barclay, W. S., Chand, M., Connor, T., Loman, N. J., Suchard, M. A., Pybus, O. G., Rambaut, A. & Kraemer, M. U. G., 6 Oct 2022, In: Nature. 610, 7930, p. 154-160 6 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    File
  • The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2

    Pekar, J. E., Magee, A., Parker, E., Moshiri, N., Izhikevich, K., Havens, J. L., Gangavarapu, K., Malpica Serrano, L. M., Crits-Christoph, A., Matteson, N. L., Zeller, M., Levy, J. I., Wang, J. C., Hughes, S., Lee, J., Park, H., Park, M. S., Ching Zi Yan, K., Lin, R. T. P., Mat Isa, M. N., & 9 othersNoor, Y. M., Vasylyeva, T. I., Garry, R. F., Holmes, E. C., Rambaut, A., Suchard, M. A., Andersen, K. G., Worobey, M. & Wertheim, J. O., 26 Aug 2022, In: Science (New York, N.Y.). 377, 6609, p. 960-966 7 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    File