The evolutionary dynamics of pathogen emergence and establishment: from Reservoir Detection to Outbreak Control

Project Details

StatusActive
Effective start/end date1/08/17 → 31/07/23

Funding

  • EU government bodies: £233,465.00
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  • Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa

    Viana, R., Moyo, S., Amoako, D. G., Tegally, H., Scheepers, C., Althaus, C. L., Anyaneji, U. J., Bester, P. A., Boni, M. F., Chand, M., Choga, W. T., Colquhoun, R., Davids, M., Deforche, K., Doolabh, D., du Plessis, L., Engelbrecht, S., Everatt, J., Giandhari, J., Giovanetti, M. & 79 others, Hardie, D., Hill, V., Hsiao, N. Y., Iranzadeh, A., Ismail, A., Joseph, C., Joseph, R., Koopile, L., Kosakovsky Pond, S. L., Kraemer, M. U. G., Kuate-Lere, L., Laguda-Akingba, O., Lesetedi-Mafoko, O., Lessells, R. J., Lockman, S., Lucaci, A. G., Maharaj, A., Mahlangu, B., Maponga, T., Mahlakwane, K., Makatini, Z., Marais, G., Maruapula, D., Masupu, K., Matshaba, M., Mayaphi, S., Mbhele, N., Mbulawa, M. B., Mendes, A., Mlisana, K., Mnguni, A., Mohale, T., Moir, M., Moruisi, K., Mosepele, M., Motsatsi, G., Motswaledi, M. S., Mphoyakgosi, T., Msomi, N., Mwangi, P. N., Naidoo, Y., Ntuli, N., Nyaga, M., Olubayo, L., Pillay, S., Radibe, B., Ramphal, Y., Ramphal, U., San, J. E., Scott, L., Shapiro, R., Singh, L., Smith-Lawrence, P., Stevens, W., Strydom, A., Subramoney, K., Tebeila, N., Tshiabuila, D., Tsui, J., van Wyk, S., Weaver, S., Wibmer, C. K., Wilkinson, E., Wolter, N., Zarebski, A. E., Zuze, B., Goedhals, D., Preiser, W., Treurnicht, F., Venter, M., Williamson, C., Pybus, O. G., Bhiman, J., Glass, A., Martin, D. P., Rambaut, A., Gaseitsiwe, S., von Gottberg, A. & de Oliveira, T., 7 Jan 2022, (E-pub ahead of print) In: Nature. 27 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
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  • Genomic sequencing of SARS-CoV-2 in Rwanda reveals the importance of incoming travelers on lineage diversity

    Butera, Y., Mukantwari, E., Artesi, M., Umuringa, J. D., O’Toole, Á. N., Hill, V., Rooke, S., Hong, S. L., Dellicour, S., Majyambere, O., Bontems, S., Boujemla, B., Quick, J., Resende, P. C., Loman, N., Umumararungu, E., Kabanda, A., Murindahabi, M. M., Tuyisenge, P., Gashegu, M. & 16 others, Rwabihama, J. P., Sindayiheba, R., Gikic, D., Souopgui, J., Ndifon, W., Rutayisire, R., Gatare, S., Mpunga, T., Ngamije, D., Bours, V., Rambaut, A., Nsanzimana, S., Baele, G., Durkin, K., Mutesa, L. & Rujeni, N., 29 Sep 2021, In: Nature Communications. 12, 1, 5705.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    File

  • Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2

    O'Toole, Á., Hill, V., Pybus, O. G., Watts, A., Bogoch, I. I., Khan, K., Messina, J. P., Tegally, H., Lessells, R. R., Giandhari, J., Pillay, S., Tumedi, K. A., Nyepetsi, G., Kebabonye, M., Matsheka, M., Mine, M., Tokajian, S., Hassan, H., Salloum, T., Merhi, G. & 69 others, Koweyes, J., Geoghegan, J. L., De Ligt, J., Ren, X., Storey, M., Freed, N. E., Pattabiraman, C., Prasad, P., Desai, A. S., Vasanthapuram, R., Schulz, T. F., Steinbrück, L., Stadler, T., Parisi, A., Bianco, A., García De Viedma, D., Buenestado-Serrano, S., Borges, V., Isidro, J., Duarte, S., Gomes, J. P., Zuckerman, N. S., Mandelboim, M., Mor, O., Seemann, T., Arnott, A., Draper, J., Gall, M., Rawlinson, W., Deveson, I., Schlebusch, S., McMahon, J., Leong, L., Lim, C. K., Chironna, M., Loconsole, D., Bal, A., Josset, L., Holmes, E., St. George, K., Lasek-nesselquist, E., Sikkema, R. S., Oude Munnink, B., Koopmans, M., Brytting, M., Sudha Rani, V., Pavani, S., Smura, T., Heim, A., Kurkela, S., Umair, M., Salman, M., Bartolini, B., Rueca, M., Drosten, C., Wolff, T., Silander, O., Eggink, D., Reusken, C., Vennema, H., Park, A., Carrington, C., Sahadeo, N., Carr, M., Gonzalez, G., De Oliveira, T., Faria, N., Rambaut, A. & Kraemer, M. U. G., 15 Sep 2021, In: Wellcome Open Research. 6, 121 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    File
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