The UK Software Sustainability Institute: Phase 3

Research output

Research output per year 2018 2020 2021 2024

• 8 Commissioned report
• 7 Article
• 3 Data set/Database
• 2 Conference contribution
• 13 More
  • 2 Abstract
  • 2 Paper
  • 2 Comment/debate
  • 2 Special issue
  • 1 Foreword/postscript
  • 1 Poster
  • 1 Editorial
  • 1 Software
  • 1 Preprint

Research output per year

Research output per year

Search results

• 2024

  Scientific Software Citation Intent Classification Using Large Language Models

  Moraw, K., Istrate, A-M., Fisher, J., Yang, X., Li, K., Li, D. & Klein, M., 15 Aug 2024, In: Lecture Notes in Computer Science. 14770, p. 80-99

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Mining RSE repository timelines on GitHub: How long will it live, and who will notice?

  Moraw, K. & Chue Hong, N. P., 4 Jun 2024, (Accepted/In press).

  Research output: Contribution to conference › Poster › peer-review

  Open Access

  File

  • Software Repository 100%

• Software and skills for research computing in the UK

  Barker, M., Breitmoser, E., Broadbent, P., Chue Hong, N. P., Hettrick, S., Lampaki, I., Quinn, A. & Taylor, R., 15 Jan 2024, Zenodo. 164 p.

  Research output: Book/Report › Commissioned report

  Open Access

  File

  • Research Collaboration 100%
  • Research Infrastructure 100%
• 2023

  Journal Production Guidance for Software and Data Citations

  Stall, S., Bilder, G., Cannon, M., Chue Hong, N. P., Edmunds, S., Erdmann, C., Evans, M., Farmer, R., Feeney, P., Friedman, M., Giampoala, M., Hanson, R. B., Harrison, M., Karaiskos, D., Katz, D. S., Letizia, V., Lizzi, V., MacCallum, C., Muench, A., Perry, K., & 7 othersRatner, H., Schindler, U., Sedora, B., Stockhause, M., Townsend, R., Yeston, J. & Clark, T., 31 Dec 2023, In: Scientific Data. 10, 1, 656.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  File

  • Citation Data 100%
  • Best Practice 50%
  • Reproducibility 25%
  • Software Development Tool 25%
  • Academic Publishing 25%

• Research software engineering is accelerating translational research

  Horsfall, D., Cool, J., Hettrick, S., Pisco, A. O., Chue Hong, N. P. & Haniffa, M., 1 Jun 2023, In: Nature Medicine. 29, 6, p. 1313-1316 4 p.

  Research output: Contribution to journal › Comment/debate

  Open Access

  • Software Engineering 100%

• Understanding the software and data used in the social sciences: A study for the Economics and Social Research Council

  Aragon, S., Antonioletti, M., Walker, J. & Chue Hong, N. P., 1 May 2023, Zenodo. 166 p.

  Research output: Book/Report › Commissioned report

  Open Access

  File

  • Social Research 100%
  • Software Infrastructure 33%
  • Large Data Set 33%
  • Data Stream 33%
  • Science Community 33%

• Dataset - Understanding the software and data used in the social sciences

  Aragon, S., Antonioletti, M., Walker, J. & Chue Hong, N. P., 30 Mar 2023

  Research output: Non-textual form › Data set/Database

  Open Access

  • Survey Analysis 100%
  • Social Science 100%
  • Research Councils 33%
  • Social Research 33%
  • Economic Research 33%
• 2022

  softwaresaved/esrc-software-study: Code release for Zenodo

  Antonioletti, M., Chue Hong, N. P. & Aragon, S., 7 Dec 2022

  Research output: Non-textual form › Software

  Open Access

  • Data in Use 100%

• UKRI-BBSRC Review of technology development in the biosciences

  Errington, R., Collinson, L., Faulds, K., Hall, N., Chue Hong, N. P., Hoogenboom, B., Kaler, J., Kemsley, K., de Mel, G. & Woolfson, D., 21 Nov 2022, UKRI. 24 p.

  Research output: Book/Report › Commissioned report

  Open Access

  File

  • Research Councils 100%
  • Technology Development 100%
  • Peer Review 100%
  • Biological Phenomena and Functions Concerning the Entire Organism 100%
  • Innovator 100%

• Introducing the FAIR Principles for research software

  Barker, M., Chue Hong, N. P., Katz, D. S., Lamprecht, A-L., Martinez Ortiz, C., Psomopoulos, F., Harrow, J., Garcia Castro, L. J., Gruenpeter, M., Martinez, P. A. & Honeyman, T., 14 Oct 2022, In: Scientific Data. 9, 1, 6 p., 622.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Research Community 100%
  • Reproducibility 100%
  • Digital Object 100%
  • Guiding Principle 100%
  • Research Output 100%

• Particle Physics: Towards a UK Technology R&D Roadmap for Accelerators, Detectors, and Software and Computing: A report provided by the Particle Physics Technology Advisory Panel on behalf of the STFC scientific community

  Chadwick, P., Angal-Kalinin, D., Appleby, R., Burt, G., Rogers, C. T., Shepherd, B., Wing, M., Bevan, A., Bongs, K., Halsall, R., Palladino, K., Romano, A., Sawyer, C., Vilella, E., Vivarelli, I., Chue Hong, N. P., Scanlon, T., Burrows, P., Clarke, J., Jamieson, C., & 5 othersKlein, M., Newbold, D., Orlowska, A., Ratoff, P. & Brown, D. (ed.), 22 Aug 2022, UKRI. 39 p.

  Research output: Book/Report › Commissioned report

  Open Access

  • Research and Development 100%
  • Committees 27%
  • Development Project 9%

• FAIR Principles for Research Software (FAIR4RS Principles) 1.0

  Chue Hong, N. P., Katz, D. S. & Barker, M., 24 May 2022, Research Data Alliance Recommendations and Outputs 30 p.

  Research output: Contribution to specialist publication › Article

  Open Access

  File

  • Guiding Principle 100%
  • Scientific Data 50%
  • Continuous Evolution 50%
  • Data Stewardship 50%
  • Working Software 50%
• 2021

  Don't mention it: challenges to using software mentions to investigate citation and discoverability - Data and Notebooks

  Druskat, S. & Chue Hong, N. P., 20 Sept 2021

  Research output: Non-textual form › Data set/Database

  • Discoverability 100%
  • Computer Science 100%

• Addressing Research Software Sustainability via Institutes

  Katz, D. S., Carver, J. C., Chue Hong, N. P., Gesing, S., Hettrick, S., Honeyman, T., Ram, K. & Weber, N., 7 Jul 2021, Proceedings of the 1st International Workshop on the Body of Knowledge for Software Sustainability (BoKSS’21). Institute of Electrical and Electronics Engineers, p. 11-12

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  File

  • Weakness 100%
  • Best Practice 100%

• Recognising the value of software: how libraries can help the adoption of software citation

  Chue Hong, N. P., Cope, J., Herterich, P., Katz, D. S. & Worthington, S., 23 Jun 2021.

  Research output: Contribution to conference › Abstract › peer-review

  Open Access

  • Research Library 100%
  • Reproducibility 66%
  • Software Repository 66%
  • Software Registry 66%
  • Research Paper 33%

• Understanding Equity, Diversity and Inclusivity Challenges Within the Research Software Community

  Chue Hong, N. P., Cohen, J. & Jay, C., 9 Jun 2021, Computational Science – ICCS 2021. Springer, Vol. VI. p. 390–403 14 p. (Lecture Notes in Computer Science; vol. 12747).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  File

  • Software Development 100%
  • Specialist Software 100%

• The FAIR4RS team: Working together to make research software FAIR

  Katz, D. S., Barker, M., Chue Hong, N. P., Garcia Castro, L. J. & Martinez, P. A., 8 Jun 2021. 4 p.

  Research output: Contribution to conference › Paper › peer-review

  Open Access

  File

  • Working Team 100%
  • Working Software 100%
  • Communication Research 100%

• FAIR Research Software and Science Gateways

  Katz, D. S., Barker, M., Garcia Castro, L. J., Chue Hong, N. P., Gruenpeter, M., Harrow, J. L., Martinez Ortiz, C., Martinez, P. A. & Psomopoulos, F., 24 May 2021, (Accepted/In press).

  Research output: Contribution to conference › Abstract › peer-review

  Open Access

  • Reproducibility 100%
  • Software Implementation 100%
  • Software Process 100%

• Special issue on software Citation, Indexing, and Discoverability

  Katz, D. S. (ed.) & Chue Hong, N. P. (ed.), 12 Mar 2021, (Accepted/In press) In: PeerJ Computer Science.

  Research output: Contribution to journal › Special issue

  Open Access

  • Discoverability 100%
  • Support Software 50%

• Using prototyping to choose a bioinformatics workflow management system

  Jackson, M., Kavoussanakis, K. & Wallace, E. W. J., 25 Feb 2021, In: PLoS Computational Biology. 17, 2, 13 p., e1008622.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Workflow Management System 100%
  • Bioinformatics 100%
  • Workflow Analysis 28%
  • Best Practice 14%
  • Reproducibility 14%

• Reproducibility Badging and Definitions: A Recommended Practice of the National Information Standards Organization

  Chue Hong, N. P., 28 Jan 2021, National Information Standards Organization (NISO). 20 p.

  Research output: Book/Report › Commissioned report

  Open Access

  • Reproducibility 100%

• Recognizing the value of software: a software citation guide [version 2; peer review: 2 approved]

  Katz, D. S., Chue Hong, N. P., Clark, T., Muench, A., Stall, S., Bouquin, D., Cannon, M., Edmunds, S., Faez, T., Feeney, P., Fenner, M., Friedman, M., Grenier, G., Harrison, M., Heber, J., Leary, A., MacCallum, C., Murray, H., Pastrana, E., Perry, K., & 3 othersSchuster, D., Stockhause, M. & Yeston, J., 12 Jan 2021, In: F1000Research.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Research Paper 100%
  • Reproducibility 100%
  • Academic Publishing 100%
  • Intended Audience 100%
  • Citation Style 100%

• The Four Pillars of Research Software Engineering

  Cohen, J., Katz, D. S., Barker, M., Chue Hong, N., Haines, R. & Jay, C., 1 Jan 2021, IEEE Software, 38, 1, p. 97-105 9 p.

  Research output: Contribution to specialist publication › Article

  Open Access

  File

  • Software Engineering 100%
  • Growing Complexity 25%
  • Building Software 25%
  • Academic Career 25%
  • Computer Hardware 25%
• 2020

  Nine Best Practices for Research Software Registries and Repositories: A Concise Guide

  Best Practices for Software Registries, T. F. O. & Chue Hong, N. P., 24 Dec 2020, ArXiv, 18 p.

  Research output: Working paper › Preprint

  File

  • Software Registry 100%

• Software as a first-class citizen in research

  Garcia Castro, L. J., Barker, M., Chue Hong, N. P., Psomopoulos, F., Harrow, J., Katz, D. S., Kuzak, M., Martinez, P. A. & Via, A., 12 Nov 2020.

  Research output: Contribution to conference › Paper › peer-review

  Open Access

  File

  • Research Community 100%
  • Management Software 100%
  • Data Management 100%

• Six Recommendations for Implementation of FAIR Practice: By the FAIR in practice task force of the European open science cloud FAIR working group

  Chue Hong, N. P., Cozzini, S., Genova, F., Hoffman-Sommer, M., Hooft, R., Lembinen, L., Marttila, J. & Teperek, M., 15 Oct 2020, Brussels: European Commission. 34 p.

  Research output: Book/Report › Commissioned report

  Open Access

  File

  • Research Funders 100%
  • Open Science 100%
  • Learning Practice 50%
  • Digital Object 50%
  • Section Detail 50%

• Building digital workforce capacity and skills for data-intensive science

  Barker, M., Dumolyn, B., van Nieuwerburgh, I., Castle, D., Arenas, M., Repanas, K., Casorran, C., Denos, N., Gharsallah, M., Mochmann, I. C., Yoshioka, N., Noh, S-Y., Luyben, K., Thomassen, G., McAllister, D., Ashley, K., Clarke, L., Katz, D. S., Leen, T. K., Teal, T., & 2 othersHodson, S. & Chue Hong, N., 10 Jul 2020, Organisation for Economic Cooperation and Development (OECD). 63 p. (OECD Science, Technology and Industry Policy Papers; no. 90)

  Research output: Book/Report › Commissioned report

  Open Access

  • Digital Platform 100%
  • Resource Requirement 100%
  • Policy Recommendation 100%
  • Infrastructure Cyber 100%
  • Scientific Enterprise 100%

• RDA COVID-19 Guidelines and Recommendations

  Working Group, RDA. COVID. & Chue Hong, N. P., 30 Jun 2020, Research Data Alliance (RDA). 143 p.

  Research output: Book/Report › Commissioned report

  Open Access

  File

  • Data Sharing 100%
  • COVID-19 100%
  • Nutrition Policy 100%
  • Public Health 100%
  • Public Health Emergency 66%

• FAIR in practice reference list

  Hooft, R., Deniz Beyan, O., Chue Hong, N. P., Cozzini, S., Hoffman-Sommer, M., Lembinen, L., Marttila, J. & Teperek, M., 18 Jun 2020

  Research output: Non-textual form › Data set/Database

  Open Access

  • References 100%

• Towards FAIR principles for research software

  Lamprecht, A-L., Garcia, L., Kuzak, M., Martinez, C., Arcila, R., Martin, E., Dominguez De Angel, V., van de Sandt, S., Ison, J., Martinez, P. A., McQuilton, P., Valencia, A., Harrow, J., Psomopoulos, F., Gelpi, J. L., Chue Hong, N., Goble, C. & Capella-Gutierrez, S., 12 Jun 2020, In: Data Science. 3, 1, p. 37-59

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Software 100%
  • Application 12%
  • Interoperability 12%
  • Guiding Principle 12%

• Critique software, but understand the constraints it’s written under: Demonising researchers who publish their code discourages openness, say Neil Chue Hong and Simon Hettrick

  Chue Hong, N. & Hettrick, S., 22 May 2020, Research Professional.

  Research output: Contribution to specialist publication › Editorial

• Software and Data Citation

  Katz, D. S., Chue Hong, N., Clark, T. W., Fenner, M. & Martone, M., 28 Feb 2020, In: Computing in Science and Engineering. 22, 2, p. 4-7 4 p.

  Research output: Contribution to journal › Special issue

  Open Access

  • Citation Data 100%
  • Digital Object 33%
  • Professional Culture 33%
  • Natural Sciences Computing 33%
• 2018

  Message from the SE4Science 2018 Co-Chairs

  Carver, J. C., Hong, N. P. C. & Jay, C., 27 Aug 2018, SE4Science ’18: Proceedings of the International Workshop on Software Engineering for Science. ACM Association for Computing Machinery, p. ix 1 p.

  Research output: Chapter in Book/Report/Conference proceeding › Foreword/postscript