A simulator for spatially extended kappa models

Oksana Sorokina; Anatoly Sorokin; Douglas Armstrong; Vincent Danos

doi:10.1093/bioinformatics/btt523

A simulator for spatially extended kappa models

Oksana Sorokina, Anatoly Sorokin, Douglas Armstrong, Vincent Danos

Research output: Contribution to journal › Article › peer-review

Abstract

Summary: Spatial Kappa is a simulator of models written in a variant of the rule-based stochastic modelling language Kappa, with spatial extensions.

Availability: The spatial kappa simulator is an open-source project licensed under the LGPLv3, with Java source, binaries and manual available at http://github.com/lptolik/SpatialKappa.

Original language	English
Pages (from-to)	3105-3106
Number of pages	2
Journal	Bioinformatics
Volume	29
Issue number	23
DOIs	https://doi.org/10.1093/bioinformatics/btt523
Publication status	Published - 3 Oct 2013

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10.1093/bioinformatics/btt523

Bioinformatics-2013-Sorokina-3105-6Final published version, 160 KBLicence: Creative Commons: Attribution (CC-BY)

http://bioinformatics.oxfordjournals.org/content/29/23/3105

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title = "A simulator for spatially extended kappa models",

abstract = "Summary: Spatial Kappa is a simulator of models written in a variant of the rule-based stochastic modelling language Kappa, with spatial extensions. Availability: The spatial kappa simulator is an open-source project licensed under the LGPLv3, with Java source, binaries and manual available at http://github.com/lptolik/SpatialKappa. ",

author = "Oksana Sorokina and Anatoly Sorokin and Douglas Armstrong and Vincent Danos",

year = "2013",

month = oct,

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AB - Summary: Spatial Kappa is a simulator of models written in a variant of the rule-based stochastic modelling language Kappa, with spatial extensions. Availability: The spatial kappa simulator is an open-source project licensed under the LGPLv3, with Java source, binaries and manual available at http://github.com/lptolik/SpatialKappa.

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A simulator for spatially extended kappa models

Abstract

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SynSys - Synaptic systems: dissecting brain function in health and disease

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A simulator for spatially extended kappa models

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SynSys - Synaptic systems: dissecting brain function in health and disease

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SynthSys; formerly CSBE: Centre for Systems Biology at Edinburgh

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