Access and Use of the GUDMAP Database of Genitourinary Development

Jamie Davies, Melissa Little, Kylie Georgas, Bruce Aronow, Jane Brennan, Susan Lloyd-MacGilp, Chris Armit, Simon Harding, Xinjun Piu, Yogmatee Roochun, Bernard Haggarty, Derek Houghton, Duncan Davidson, Richard Baldock

Research output: Contribution to journalArticlepeer-review

Abstract

The Genitourinary Development Molecular Atlas Project (GUDMAP) aims to document gene expression across time and space in the developing urogenital system of the mouse, and to provide access to a variety of relevant practical and educational resources. Data come from microarray gene expression profiling (from laser-dissected and FACS-sorted samples) and in situ hybridization at both low (whole-mount) and high (section) resolutions. Data are annotated to a published, high-resolution anatomical ontology and can be accessed using a variety of search interfaces. Here, we explain how to run typical queries on the database, by gene or anatomical location, how to view data, how to perform complex queries, and how to submit data.
Original languageEnglish
Pages (from-to)185-201
Number of pages17
JournalMethods in Molecular Biology
Volume886
DOIs
Publication statusPublished - 2012

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