Adapting a relation extraction pipeline for the BioCreAtIvE II task

Claire Grover, Barry Haddow, Ewan Klein, Michael Matthews, Leif Arda Nielsen, Richard Tobin, Xinglong Wang

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

The Second BioCreAtIvE Challenge provided an ideal opportunity to evaluate biomedical nlp techniques. Prior to the Challenge, an information extraction pipeline was developed to extract entities and relations relevant to the biomedical domain, and to normalise the entities to appropriate ontologies. With minimal effort, the pipeline was adapted to work with the BioCreAtIvE data and achieved results that appear competitive with existing state-of-the-art systems.
Original languageEnglish
Title of host publicationProceedings of the BioCreAtIvE II Workshop
Pages273-286
Number of pages14
Publication statusPublished - 2007

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