Adapting a relation extraction pipeline for the BioCreAtIvE II task

Claire Grover; Barry Haddow; Ewan Klein; Michael Matthews; Leif Arda Nielsen; Richard Tobin; Xinglong Wang

Adapting a relation extraction pipeline for the BioCreAtIvE II task

Claire Grover, Barry Haddow, Ewan Klein, Michael Matthews, Leif Arda Nielsen, Richard Tobin, Xinglong Wang

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Abstract / Description of output

The Second BioCreAtIvE Challenge provided an ideal opportunity to evaluate biomedical nlp techniques. Prior to the Challenge, an information extraction pipeline was developed to extract entities and relations relevant to the biomedical domain, and to normalise the entities to appropriate ontologies. With minimal eﬀort, the pipeline was adapted to work with the BioCreAtIvE data and achieved results that appear competitive with existing state-of-the-art systems.

Original language	English
Title of host publication	Proceedings of the BioCreAtIvE II Workshop
Pages	273-286
Number of pages	14
Publication status	Published - 2007

Access to Document

Grover Haddow 2007 Adapting a Relation Extraction Pipeline Pipeline for the BioCreAtIvE II TaskAccepted author manuscript, 215 KB

http://www.biocreative.org/media/store/files/2008/BioCreative_2_Proceedings.pdf

Cite this

@inproceedings{f936928c0c5a4122b2764fc360c65065,

title = "Adapting a relation extraction pipeline for the BioCreAtIvE II task",

abstract = "The Second BioCreAtIvE Challenge provided an ideal opportunity to evaluate biomedical nlp techniques. Prior to the Challenge, an information extraction pipeline was developed to extract entities and relations relevant to the biomedical domain, and to normalise the entities to appropriate ontologies. With minimal eﬀort, the pipeline was adapted to work with the BioCreAtIvE data and achieved results that appear competitive with existing state-of-the-art systems.",

author = "Claire Grover and Barry Haddow and Ewan Klein and Michael Matthews and Nielsen, {Leif Arda} and Richard Tobin and Xinglong Wang",

year = "2007",

language = "English",

pages = "273--286",

booktitle = "Proceedings of the BioCreAtIvE II Workshop",

}

TY - GEN

T1 - Adapting a relation extraction pipeline for the BioCreAtIvE II task

AU - Grover, Claire

AU - Haddow, Barry

AU - Klein, Ewan

AU - Matthews, Michael

AU - Nielsen, Leif Arda

AU - Tobin, Richard

AU - Wang, Xinglong

PY - 2007

Y1 - 2007

N2 - The Second BioCreAtIvE Challenge provided an ideal opportunity to evaluate biomedical nlp techniques. Prior to the Challenge, an information extraction pipeline was developed to extract entities and relations relevant to the biomedical domain, and to normalise the entities to appropriate ontologies. With minimal eﬀort, the pipeline was adapted to work with the BioCreAtIvE data and achieved results that appear competitive with existing state-of-the-art systems.

AB - The Second BioCreAtIvE Challenge provided an ideal opportunity to evaluate biomedical nlp techniques. Prior to the Challenge, an information extraction pipeline was developed to extract entities and relations relevant to the biomedical domain, and to normalise the entities to appropriate ontologies. With minimal eﬀort, the pipeline was adapted to work with the BioCreAtIvE data and achieved results that appear competitive with existing state-of-the-art systems.

M3 - Conference contribution

SP - 273

EP - 286

BT - Proceedings of the BioCreAtIvE II Workshop

ER -

Adapting a relation extraction pipeline for the BioCreAtIvE II task

Abstract / Description of output

Access to Document

Fingerprint

Cite this