Analysis of Brownian Dynamics Simulations of Reversible Bimolecular Reactions

Jana Lipková, Konstantinos C. Zygalakis, S. Jonathan Chapman, Radek Erban

Research output: Contribution to journalArticlepeer-review

Abstract

A class of Brownian dynamics algorithms for stochastic reaction-diffusion models which include reversible bimolecular reactions is presented and analyzed. The method is a generalization of the $\lambda$–$\overline{\varrho}$ model for irreversible bimolecular reactions which was introduced in [R. Erban and S. J. Chapman, Phys. Biol., 6 (2009), 046001]. The formulae relating the experimentally measurable quantities (reaction rate constants and diffusion constants) with the algorithm parameters are derived. The probability of geminate recombination is also investigated.


Read More: http://epubs.siam.org/doi/abs/10.1137/100794213
Original languageEnglish
Pages (from-to)714-730
JournalSiam Journal on Applied Mathematics
Volume71
Issue number3
DOIs
Publication statusPublished - 4 May 2011

Fingerprint

Dive into the research topics of 'Analysis of Brownian Dynamics Simulations of Reversible Bimolecular Reactions'. Together they form a unique fingerprint.

Cite this