ASAR Database: An R Tool for Visual Analysis and Storage of Metagenomes

Askarbek Orakov; Nazgul Sakenova; Igor Goryanin; Anatoly Sorokin

doi:10.5220/0006722801960200

ASAR Database: An R Tool for Visual Analysis and Storage of Metagenomes

Askarbek Orakov, Nazgul Sakenova, Igor Goryanin, Anatoly Sorokin

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Abstract / Description of output

The functional and taxonomic analysis is the critical step in understanding the interspecies interaction within the microbial communities. Currently, these types of analysis are run independently, which makes interpretation of the results hard and error-prone. Here we present ASAR (Advanced metagenomic Sequence Analysis in R) Database, the interactive tool and the databases for storage and exploratory analysis of the metagenomic sequencing data along three dimensions: taxonomy, function, and environmental conditions.

Original language	English
Title of host publication	Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies - Volume 4: BIOINFORMATICS
Place of Publication	Madeira, Portugal
Pages	196-200
Number of pages	5
ISBN (Electronic)	978-989-758-280-6
DOIs	https://doi.org/10.5220/0006722801960200
Publication status	E-pub ahead of print - 21 Jan 2018
Event	The 11th International Joint Conference on Biomedical Engineering Systems and Technologies - Funchal, Portugal Duration: 19 Jan 2018 → 21 Jan 2018

Publication series

Name	Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies
Volume	3
ISSN (Electronic)	2184-4305

Conference

Conference	The 11th International Joint Conference on Biomedical Engineering Systems and Technologies
Abbreviated title	BIOSTEC 2018
Country/Territory	Portugal
City	Funchal
Period	19/01/18 → 21/01/18

Access to Document

10.5220/0006722801960200

ASARJan18Accepted author manuscript, 327 KB

http://www.scitepress.org/DigitalLibrary/PublicationsDetail.aspx?ID=cHY7qo5EgRE=&t=1

Cite this

Orakov, A., Sakenova, N., Goryanin, I., & Sorokin, A. (2018). ASAR Database: An R Tool for Visual Analysis and Storage of Metagenomes. In Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies - Volume 4: BIOINFORMATICS (pp. 196-200). (Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies; Vol. 3).. Advance online publication. https://doi.org/10.5220/0006722801960200

Orakov, Askarbek ; Sakenova, Nazgul ; Goryanin, Igor et al. / ASAR Database: An R Tool for Visual Analysis and Storage of Metagenomes. Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies - Volume 4: BIOINFORMATICS. Madeira, Portugal, 2018. pp. 196-200 (Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies).

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title = "ASAR Database: An R Tool for Visual Analysis and Storage of Metagenomes",

abstract = "The functional and taxonomic analysis is the critical step in understanding the interspecies interaction within the microbial communities. Currently, these types of analysis are run independently, which makes interpretation of the results hard and error-prone. Here we present ASAR (Advanced metagenomic Sequence Analysis in R) Database, the interactive tool and the databases for storage and exploratory analysis of the metagenomic sequencing data along three dimensions: taxonomy, function, and environmental conditions.",

author = "Askarbek Orakov and Nazgul Sakenova and Igor Goryanin and Anatoly Sorokin",

year = "2018",

month = jan,

day = "21",

doi = "10.5220/0006722801960200",

language = "English",

series = "Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies",

pages = "196--200",

booktitle = "Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies - Volume 4: BIOINFORMATICS",

note = "The 11th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2018 ; Conference date: 19-01-2018 Through 21-01-2018",

}

Orakov, A, Sakenova, N, Goryanin, I & Sorokin, A 2018, ASAR Database: An R Tool for Visual Analysis and Storage of Metagenomes. in Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies - Volume 4: BIOINFORMATICS. Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies, vol. 3, Madeira, Portugal, pp. 196-200, The 11th International Joint Conference on Biomedical Engineering Systems and Technologies, Funchal, Portugal, 19/01/18. https://doi.org/10.5220/0006722801960200

ASAR Database: An R Tool for Visual Analysis and Storage of Metagenomes. / Orakov, Askarbek; Sakenova, Nazgul; Goryanin, Igor et al.
Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies - Volume 4: BIOINFORMATICS. Madeira, Portugal, 2018. p. 196-200 (Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies; Vol. 3).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

TY - GEN

T1 - ASAR Database: An R Tool for Visual Analysis and Storage of Metagenomes

AU - Orakov, Askarbek

AU - Sakenova, Nazgul

AU - Goryanin, Igor

AU - Sorokin, Anatoly

PY - 2018/1/21

Y1 - 2018/1/21

N2 - The functional and taxonomic analysis is the critical step in understanding the interspecies interaction within the microbial communities. Currently, these types of analysis are run independently, which makes interpretation of the results hard and error-prone. Here we present ASAR (Advanced metagenomic Sequence Analysis in R) Database, the interactive tool and the databases for storage and exploratory analysis of the metagenomic sequencing data along three dimensions: taxonomy, function, and environmental conditions.

AB - The functional and taxonomic analysis is the critical step in understanding the interspecies interaction within the microbial communities. Currently, these types of analysis are run independently, which makes interpretation of the results hard and error-prone. Here we present ASAR (Advanced metagenomic Sequence Analysis in R) Database, the interactive tool and the databases for storage and exploratory analysis of the metagenomic sequencing data along three dimensions: taxonomy, function, and environmental conditions.

U2 - 10.5220/0006722801960200

DO - 10.5220/0006722801960200

M3 - Conference contribution

T3 - Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies

SP - 196

EP - 200

BT - Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies - Volume 4: BIOINFORMATICS

CY - Madeira, Portugal

T2 - The 11th International Joint Conference on Biomedical Engineering Systems and Technologies

Y2 - 19 January 2018 through 21 January 2018

ER -

Orakov A, Sakenova N, Goryanin I, Sorokin A. ASAR Database: An R Tool for Visual Analysis and Storage of Metagenomes. In Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies - Volume 4: BIOINFORMATICS. Madeira, Portugal. 2018. p. 196-200. (Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies). Epub 2018 Jan 21. doi: 10.5220/0006722801960200

ASAR Database: An R Tool for Visual Analysis and Storage of Metagenomes

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