ASAR: visual analysis of metagenomes in R

Askarbek Orakov, Nazgul Sakenova, Anatoly Sorokin, Igor Goryanin

Research output: Contribution to journalArticlepeer-review

Abstract

Motivation: Functional and taxonomic analyses are critical steps in understanding interspecific interactions within microbial communities. Currently, such analyses are run separately, which complicates interpretation of results. Here we present the ASAR interactive tool for simultaneous analysis of metagenomic data in three dimensions: taxonomy, function, metagenome.

Results: An interactive data analysis tool for selection, aggregation, and visualization of metagenomic data is presented. Functional analysis with a SEED hierarchy and pathway diagram based on KEGG orthology based upon MG-RAST annotation results is available.


Original languageEnglish
Pages (from-to)1404–1405
Number of pages2
JournalBioinformatics
Volume34
Issue number8
Early online date1 Dec 2017
DOIs
Publication statusPublished - 15 Apr 2018

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