TY - JOUR
T1 - Assessment of perivascular space filtering methods using a three-dimensional computational model
AU - Bernal, Jose
AU - Valdés-hernández, Maria D.c.
AU - Escudero, Javier
AU - Duarte, Roberto
AU - Ballerini, Lucia
AU - Bastin, Mark E.
AU - Deary, Ian J.
AU - Thrippleton, Michael J.
AU - Touyz, Rhian M.
AU - Wardlaw, Joanna M.
N1 - Funding Information:
The LBC1936 study was funded by Age UK and the UK Medical Research Council ( http://www.disconnectedmind.ed.ac.uk/ ) (including the Sidney De Haan Award for Vascular Dementia). LBC1936 MRI brain imaging was supported by Medical Research Council (MRC) grants G0701120 , G1001245 , MR/M013111/1 and MR/R024065/1 . Funds were also received from The University of Edinburgh Centre for Cognitive Ageing and Cognitive Epidemiology, part of the cross council Lifelong Health and Wellbeing Initiative ( MR/K026992/1 ), and the Biotechnology and Biological Sciences Research Council (BBSRC) .
Funding Information:
This work is supported by: MRC Doctoral Training Programme in Precision Medicine (JB - Award Reference No. 2096671); The Galen and Hilary Weston Foundation under the Novel Biomarkers 2019 scheme (ref UB190097) administered by the Weston Brain Institute; the UK Dementia Research Institute which receives its funding from DRI Ltd., funded by the UK MRC, Alzheimer's Society and Alzheimer's Research UK; the Fondation Leducq Network for the Study of Perivascular Spaces in Small Vessel Disease (16 CVD 05); Stroke Association ‘Small Vessel Disease-Spotlight on Symptoms (SVD-SOS)’ (SAPG 19\100068); The Row Fogo Charitable Trust Centre for Research into Ageing and the Brain (MVH) (BRO-D.FID3668413); British Heart Foundation Edinburgh Centre for Research Excellence (RE/18/5/34216); NHS Lothian Research and Development Office (MJT). The LBC1936 study was funded by Age UK and the UK Medical Research Council (http://www.disconnectedmind.ed.ac.uk/) (including the Sidney De Haan Award for Vascular Dementia). LBC1936 MRI brain imaging was supported by Medical Research Council (MRC) grants G0701120, G1001245, MR/M013111/1 and MR/R024065/1. Funds were also received from The University of Edinburgh Centre for Cognitive Ageing and Cognitive Epidemiology, part of the cross council Lifelong Health and Wellbeing Initiative (MR/K026992/1), and the Biotechnology and Biological Sciences Research Council (BBSRC). We thank the LBC1936 study participants, their families and radiographers at Edinburgh Imaging Facilities. We thank the LBC1936 study team members who recruited the participants of the study.
Funding Information:
This work is supported by: MRC Doctoral Training Programme in Precision Medicine (JB - Award Reference No. 2096671 ); The Galen and Hilary Weston Foundation under the Novel Biomarkers 2019 scheme (ref UB190097 ) administered by the Weston Brain Institute ; the UK Dementia Research Institute which receives its funding from DRI Ltd. , funded by the UK MRC , Alzheimer's Society and Alzheimer's Research UK ; the Fondation Leducq Network for the Study of Perivascular Spaces in Small Vessel Disease ( 16 CVD 05 ); Stroke Association ‘Small Vessel Disease-Spotlight on Symptoms (SVD-SOS)’ ( SAPG 19\100068 ); The Row Fogo Charitable Trust Centre for Research into Ageing and the Brain (MVH) ( BRO-D.FID3668413 ); British Heart Foundation Edinburgh Centre for Research Excellence ( RE/18/5/34216 ); NHS Lothian Research and Development Office (MJT) .
Publisher Copyright:
© 2022 The Authors
PY - 2022/11/1
Y1 - 2022/11/1
N2 - Growing interest surrounds the assessment of perivascular spaces (PVS) on magnetic resonance imaging (MRI) and their validation as a clinical biomarker of adverse brain health. Nonetheless, the limits of validity of current state-of-the-art segmentation methods are still unclear. Here, we propose an open-source three-dimensional computational framework comprising 3D digital reference objects and evaluate the performance of three PVS filtering methods under various spatiotemporal imaging considerations (including sampling, motion artefacts, and Rician noise). Specifically, we study the performance of the Frangi, Jerman and RORPO filters in enhancing PVS-like structures to facilitate segmentation. Our findings were three-fold. First, as long as voxels are isotropic, RORPO outperforms the other two filters, regardless of imaging quality. Unlike the Frangi and Jerman filters, RORPO's performance does not deteriorate as PVS volume increases. Second, the performance of all “vesselness” filters is heavily influenced by imaging quality, with sampling and motion artefacts being the most damaging for these types of analyses. Third, none of the filters can distinguish PVS from other hyperintense structures (e.g. white matter hyperintensities, stroke lesions, or lacunes) effectively, the area under precision-recall curve dropped substantially (Frangi: from 94.21 [IQR 91.60, 96.16] to 43.76 [IQR 25.19, 63.38]; Jerman: from 94.51 [IQR 91.90, 95.37] to 58.00 [IQR 35.68, 64.87]; RORPO: from 98.72 [IQR 95.37, 98.96] to 71.87 [IQR 57.21, 76.63] without and with other hyperintense structures, respectively). The use of our computational model enables comparing segmentation methods and identifying their advantages and disadvantages, thereby providing means for testing and optimising pipelines for ongoing and future studies.
AB - Growing interest surrounds the assessment of perivascular spaces (PVS) on magnetic resonance imaging (MRI) and their validation as a clinical biomarker of adverse brain health. Nonetheless, the limits of validity of current state-of-the-art segmentation methods are still unclear. Here, we propose an open-source three-dimensional computational framework comprising 3D digital reference objects and evaluate the performance of three PVS filtering methods under various spatiotemporal imaging considerations (including sampling, motion artefacts, and Rician noise). Specifically, we study the performance of the Frangi, Jerman and RORPO filters in enhancing PVS-like structures to facilitate segmentation. Our findings were three-fold. First, as long as voxels are isotropic, RORPO outperforms the other two filters, regardless of imaging quality. Unlike the Frangi and Jerman filters, RORPO's performance does not deteriorate as PVS volume increases. Second, the performance of all “vesselness” filters is heavily influenced by imaging quality, with sampling and motion artefacts being the most damaging for these types of analyses. Third, none of the filters can distinguish PVS from other hyperintense structures (e.g. white matter hyperintensities, stroke lesions, or lacunes) effectively, the area under precision-recall curve dropped substantially (Frangi: from 94.21 [IQR 91.60, 96.16] to 43.76 [IQR 25.19, 63.38]; Jerman: from 94.51 [IQR 91.90, 95.37] to 58.00 [IQR 35.68, 64.87]; RORPO: from 98.72 [IQR 95.37, 98.96] to 71.87 [IQR 57.21, 76.63] without and with other hyperintense structures, respectively). The use of our computational model enables comparing segmentation methods and identifying their advantages and disadvantages, thereby providing means for testing and optimising pipelines for ongoing and future studies.
U2 - 10.1016/j.mri.2022.07.016
DO - 10.1016/j.mri.2022.07.016
M3 - Article
SN - 0730-725X
VL - 93
SP - 33
EP - 51
JO - Magnetic Resonance Imaging
JF - Magnetic Resonance Imaging
ER -