Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10

Marc A Suchard, Philippe Lemey, Guy Baele, Daniel L Ayres, Alexei J Drummond, Andrew Rambaut

Research output: Contribution to journalArticlepeer-review

Abstract

The Bayesian Evolutionary Analysis by Sampling Trees (BEAST) software package has become a primary tool for Bayesian phylogenetic and phylodynamic inference from genetic sequence data. BEAST unifies molecular phylogenetic reconstruction with complex discrete and continuous trait evolution, divergence-time dating, and coalescent demographic models in an efficient statistical inference engine using Markov chain Monte Carlo integration. A convenient, cross-platform, graphical user interface allows the flexible construction of complex evolutionary analyses.

Original languageEnglish
Article numbervey016
Number of pages5
JournalVirus Evolution
Volume4
Issue number1
DOIs
Publication statusPublished - 8 Jun 2018

Keywords

  • Bayesian inference
  • Markov chain monte carlo
  • phylodynamics
  • phylogenetics

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