Characterization of the complete chloroplast genome sequence of Cecropia pachystachya

Zeng-Yuan Wu; Xin Yu Du; Richard I. Milne; Jie Liu; De Zhu Li

doi:10.1080/23802359.2017.1390420

Characterization of the complete chloroplast genome sequence of Cecropia pachystachya

Zeng-Yuan Wu, Xin Yu Du, Richard I. Milne, Jie Liu, De Zhu Li

School of Biological Sciences

Research output: Contribution to journal › Article › peer-review

Abstract

The complete chloroplast genome of Cecropia pachystachya Trécul was determined in this study. The total genome size was 153,925 bp in length, containing a pair of inverted repeats (IRs) of 25,443 bp, which were separated by large single copy (LSC) and small single copy (SSC) of 84,947 bp and 18,092 bp, respectively. The GC contents is 36.5%. A total of 112 unique genes were annotated, including 30 tRNA, four rRNA, and 78 protein-coding genes. This is the first report of a cp genome for the formerly recognised family Cecropiaceae, and it confirmed that Cecropia pachystachya belongs within Urticaceae.

Original language	English
Pages (from-to)	735-737
Number of pages	3
Journal	Mitochondrial DNA Part B
Volume	2
Issue number	2
Early online date	17 Oct 2017
DOIs	https://doi.org/10.1080/23802359.2017.1390420
Publication status	Published - 20 Dec 2017

Keywords / Materials (for Non-textual outputs)

Cecropiaceae
chloroplast genome
phylogeny
urticaceae

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10.1080/23802359.2017.1390420Licence: Creative Commons: Attribution (CC-BY)

12_18_2017_Characterization of the complete chloroplast genome
© 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
Final published version, 806 KBLicence: Creative Commons: Attribution (CC-BY)

Cite this

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title = "Characterization of the complete chloroplast genome sequence of Cecropia pachystachya",

abstract = "The complete chloroplast genome of Cecropia pachystachya Tr{\'e}cul was determined in this study. The total genome size was 153,925 bp in length, containing a pair of inverted repeats (IRs) of 25,443 bp, which were separated by large single copy (LSC) and small single copy (SSC) of 84,947 bp and 18,092 bp, respectively. The GC contents is 36.5%. A total of 112 unique genes were annotated, including 30 tRNA, four rRNA, and 78 protein-coding genes. This is the first report of a cp genome for the formerly recognised family Cecropiaceae, and it confirmed that Cecropia pachystachya belongs within Urticaceae.",

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AU - Wu, Zeng-Yuan

AU - Du, Xin Yu

AU - Milne, Richard I.

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AU - Li, De Zhu

PY - 2017/12/20

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N2 - The complete chloroplast genome of Cecropia pachystachya Trécul was determined in this study. The total genome size was 153,925 bp in length, containing a pair of inverted repeats (IRs) of 25,443 bp, which were separated by large single copy (LSC) and small single copy (SSC) of 84,947 bp and 18,092 bp, respectively. The GC contents is 36.5%. A total of 112 unique genes were annotated, including 30 tRNA, four rRNA, and 78 protein-coding genes. This is the first report of a cp genome for the formerly recognised family Cecropiaceae, and it confirmed that Cecropia pachystachya belongs within Urticaceae.

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Characterization of the complete chloroplast genome sequence of Cecropia pachystachya

Abstract

Keywords / Materials (for Non-textual outputs)

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