Cluster Picker and Cluster Matcher: A tool combination for the phylogenetic analysis of clusters of nucleotide sequences (in java)

Samantha Lycett (Developer), Emma Hodcroft (Developer), Manon Ragonnet-Cronin (Developer)

Research output: Non-textual formSoftware

Abstract / Description of output

* Cluster Picker - Identifies monophyletic clades meeting user-input criteria for bootstrap support and maximum genetic distance within large phylogenetic trees.

* Cluster Matcher - Automates the process of linking genetic data to epidemiological or clinical data, and matches clusters between runs of the Cluster Picker.

Associated paper: Ragonnet-Cronin M, Hodcroft E, Hue S, Fearnhill E, Dunn D, Delpech V, Leigh Brown A and Lycett S, "Automated Analysis of Phylogenetic Clusters" BMC Bioinformatics 2013, 14:317

Latest version (source code, compiled code)
https://github.com/emmahodcroft/cluster-picker-and-cluster-matcher
Original languageEnglish
Media of outputOnline
DOIs
Publication statusPublished - 13 Jun 2013

Keywords / Materials (for Non-textual outputs)

  • Java source code
  • Phylogenetic analysis
  • Cluster Analysis

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