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In this study, we refined the QTL in the F2 by adding SNP markers. We then tested the SNPs from the refined region on the 2006 generation of the White Leghorn line from which the F2 was derived after 4 generations of divergent selection. Subsequently, birds from the 2011 generation were genotyped for the QTL haplotype and birds with alternative QTL haplotypes were selected for qPCR of candidate genes and RNA sequencing.
For the SNPs with the most consistent effects, the tibial breaking strength for the alternative haplotypes in the 2006 population was 200.4 vs 218.1 Newtons (p<0.002). This SNP marker is also significantly associated (P=0.019) with cortical bone density (mmAl equiv/mm3). The values for each haplotype were 0.044 vs 0.050.
The RNA sequencing showed strong differential expression for a single candidate gene in the QTL region with clear allelic imbalance suggesting a cis-acting effect within the candidate gene.
BISHOP, S. C., et al 2000. British Poultry Science, 41,33-40.
DUNN, I. C. et al, 2007. Animal Genetics, 38, 45-49.
|Publication status||Published - 11 Jan 2014|
|Event||International Plant and animal genome XXII (PAG XXII) - Town and Country Hotel, San Diego, CA, USA, United States|
Duration: 11 Jan 2014 → 15 Jan 2014
|Conference||International Plant and animal genome XXII (PAG XXII)|
|City||San Diego, CA, USA|
|Period||11/01/14 → 15/01/14|
FingerprintDive into the research topics of 'Combining QTL Mapping, GWAS and RNA Sequencing to Resolve a QTL Affecting Bone Strength to the Functional Gene'. Together they form a unique fingerprint.
- 1 Finished
Burdon, T., Argyle, D., Ashworth, C., Beard, P., Brunton, P., Burt, D., Clinton, M., Dunn, I., Farquharson, C., Headon, D., Hocking, P., Hohenstein, P., Hume, D., Jackson, I., McColl, B., McGrew, M., McLachlan, G., Sang, H., Summers, K. & Whitelaw, B.
1/04/12 → 31/03/17